Comparison of southern Chinese Han and Brazilian Caucasian mutation rates at autosomal short tandem repeat loci used in human forensic genetics
- 530 Downloads
The short tandem repeat (STR) loci used in human genetic studies are characterized by having relatively high mutation rates. In particular, to ensure an appropriate evaluation of genetic evidence in parentage and forensic analyses, it is essential to have accurate estimates of the mutation rates associated with the commonly used autosomal and sex chromosome STR loci. Differences in STR mutation rates between different ethnic groups should also be determined. Mutation data from two laboratories working with different ethnic groups were extracted from many meiotic transmissions ascertained for 15 autosomal STR loci currently used in forensic routine. Forty-five thousand and eighty-five trios were checked for the biological consistency of maternity and paternity through the analysis of a minimum of 15 loci. Mutations were scored as paternal, maternal, or ambiguous according to the most parsimonious explanation for the inconsistency, using always the least requiring hypothesis in terms of number of repeat differences. The main findings are: (a) the overall mutation rate across the 15 loci was 9.78 × 10−4 per gamete per generation (95 % CI = 9.30 × 10−4–1.03 × 10−3), and with just 48 (out of 1,587) exceptions, all of the mutations were single-step; (b) repeat gains were more frequent than losses; (c) longer alleles were found to be more mutable; and (d) the mutation rates differ at some loci between the two ethnic groups. Large worldwide meiotic transmission datasets are still needed to measure allele-specific mutation rates at the STR loci consensually used in forensic genetics.
KeywordsSTR loci Mutation rate Parentage testing
This work was supported by grants from the Science and Technology Committee of Shanghai Municipality (12DZ2271500) and the National Natural Science Foundation of China (81273347).
- 6.Edwards A, Hammond HA, Jin L, Caskey CT, Chakraborty R (1993) Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 20:241–253Google Scholar
- 11.Vicard P, Dawid AP, Mortera J, Lauritzen SL (2008) Estimating mutation rates from paternity casework. Forensic Sci Int: Genetics 2:9–18Google Scholar
- 12.AABB. http://www.aabb.org/sa/facilities/Documents/rtannrpt08.pdf. Accessed 7 February 2013
- 25.Gjertson D (2006) The effect of isolated inconsistencies in the statistical evaluation of paternity. In: Guidance for standards for relationship testing laboratories, 7th edn. American Association of Blood Banks, Bethesda, pp 152–160Google Scholar
- 26.Fimmers R, Henke L, Henke J, Baur MP (1992) How to deal with mutations in DNA testing. In: Rittner C, Schneider PM (eds) Advances in forensic haemogenetics 4. Springer, Berlin, pp 285–287Google Scholar