Abstract
Clubroot disease, caused by Plasmodiophora brassicae Woronin infection, leads to significant yield and economic losses in cruciferous vegetables. However, the molecular mechanism underlying the interaction between P. brassicae and Chinese cabbage (Brassica rapa L. ssp. pekinensis) remains unknown. In this study, two-dimensional electrophoresis was used to screen differentially expressed proteins (DEPs) in clubroot-diseased and control roots of Chinese cabbage. A total of 21 DEPs changed by more than twofold in the diseased roots, of which 16 were successfully identified using matrix-assisted laser desorption/ionization-time of flight/mass spectrometry. Quantitative real-time polymerase chain reactions’ analysis showed that most of the 16 candidate genes had the consistent transcription and protein level expression. Gene ontology analysis revealed that 10 out of 16 candidate genes responded to stimulus. Two of these genes were involved in the salicylic acid (SA) signaling pathway. The content of SA and the expression of genes in the SA signaling pathway were altered in the diseased roots and disease resistance increased after SA treatment. Thus, the interactions between Chinese cabbage and P. brassicae stimulate the SA signaling pathway. Our findings may contribute to improving clubroot resistance in Chinese cabbage.
Similar content being viewed by others
Abbreviations
- 2-DE:
-
Two-dimensional electrophoresis
- ACN:
-
Acetonitrile
- BRAD:
-
Brassica Database
- CDR1:
-
Constitutive Disease 119 Resistance 1
- CID:
-
Collision-induced dissociation
- CHCA:
-
α-Cyano-4-hydroxycinnamic acid
- DEPs:
-
Differentially expressed proteins
- DTT:
-
Dithiothreitol
- EDS1:
-
Enhanced Disease Susceptibility 1
- GO:
-
Gene Ontology
- HPLC:
-
High-performance liquid chromatography
- ICS:
-
Isochorismate Synthase
- IEF:
-
Isoelectric focusing
- IPG:
-
Immobilized pH gradient
- KEGG:
-
Kyoto Encyclopedia of Genes and Genomes
- MALDI-TOF/TOF MS:
-
Matrix-assisted laser desorption/ionization-time of flight/mass spectrometry
- NDR1:
-
Non-Race Specific Disease Resistance 1
- NPR1:
-
Non-expressor of PR1
- OD:
-
Optical density
- PAD4:
-
Phytoalexin Deficient 4
- PAGE:
-
Polyacrylamide gel electrophoresis
- PMF:
-
Peptide mass fingerprinting
- PR1:
-
Pathogenesis Related 1
- qRT-PCR:
-
Quantitative real-time polymerase chain reaction
- SA:
-
Salicylic acid
- SAR:
-
Systemic acquired resistance
- SDS:
-
Sodium dodecyl sulfate
- TCA:
-
Trichloroacetic acid
- TFA:
-
Trifluoroacetic acid
References
Aarts N, Metz M, Holub E, Staskawicz BJ, Daniels MJ, Parker JE (1998) Different requirements for EDS1 and NDR1 by disease resistance genes define at least two R gene-mediated signaling pathways in Arabidopsis. Proc Natl Acad Sci USA 95(17):10306–10311. https://doi.org/10.1073/pnas.95.17.10306
Abounassif MA, Mian MS, Mian NAA (1994) Salicylic acid. In: Analytical profiles of drug substances and excipients, 23(7):421–470. https://doi.org/10.1016/S0099-5428(08)60609-7
Aroca A, Benito JM, Gotor C, Romero LC (2017) Persulfidation proteome reveals the regulation of protein function by hydrogen sulfide in diverse biological processes in Arabidopsis. J Exp Bot 68(17):4915–4927. https://doi.org/10.1093/jxb/erx294
Bhattacharya I, Dixon GR (2010) Management of clubroot disease (Plasmodiophora brassicae) of brassicas using trap cropping techniques. Acta Hortic 867:157–164. https://doi.org/10.17660/ActaHortic.2010.867.20
Bonsager BC, Finnie C, Roepstorff P, Svensson B (2007) Spatio-temporal changes in germination and radical elongation of barley seeds tracked by proteome analysis of dissected embryo, aleurone layer, and endosperm tissues. Proteomics 7(24):4528–4540. https://doi.org/10.1002/pmic.200700766
Cao T, Srivastava S, Rahman MH, Kav NNV, Hotte N, Deyholos MK, Strelkov SE (2008) Proteome-level changes in the roots of Brassica napus as a result of Plasmodiophora brassicae infection. Plant Sci 174(1):97–115. https://doi.org/10.1016/j.plantsci.2007.10.002
Carviel JL, Wilson DC, Isaacs M, Carella P, Catana V, Golding B, et al. (2014) Investigation of intercellular salicylic acid accumulation during compatible and incompatible Arabidopsis–Pseudomonas syringae interactions using a fast neutron-generated mutant allele of EDS5 identified by genetic mapping and whole-genome sequencing. PLoS ONE 9(3):e88608. https://doi.org/10.1371/journal.pone.0088608
Chen J, Pang W, Chen B, Zhang C, Piao Z (2016) Transcriptome analysis of Brassica rapa near-isogenic lines carrying clubroot-resistant and -susceptible alleles in response to Plasmodiophora brassicae during early infection. Front Plant Sci 6. https://doi.org/10.3389/fpls.2015.01183
Cheng F, Liu S, Wu J et al (2011) BRAD, the genetics and genomics database for Brassica plants. BMC Plant Biol 11:136. https://doi.org/10.1186/1471-2229-11-136
Cho YE, Moon PG, Lee JE et al (2013) Integrative analysis of proteomic and transcriptomic data for identification of pathways related to simvastatin-induced hepatotoxicity. Proteomics 13(8):1257–1275. https://doi.org/10.1002/pmic.201200368
Doerfler H, Lyon D, Nägele T et al (2013) Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism. Metabolomics 9:564–574. https://doi.org/10.1007/s11306-012-0470-0
Greenbaum D, Colangelo C, Williams K, Gerstein M (2003) Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 4:117. https://doi.org/10.1186/gb-2003-4-9-117
Hatakeyama K, Tomita RN, Kato T, Nunome T, Fukuoka H, Matsumoto S, Suwabe K (2013) Molecular cloning of crr1a, a gene for resistance to clubroot disease (Plasmodiophora brassicae Woronin) in Brassica rapa l. Acta Hortic 1005:621–626. https://doi.org/10.17660/ActaHortic.2013.1005.77
Heidrich K, Wirthmueller L, Tasset C, Pouzet C, Deslandes L, Parker JE (2011) Arabidopsis EDS1 connects pathogen effector recognition to cell compartment-specific immune responses. Science 334(6061):1401–1404. https://doi.org/10.1126/science.1211641
Huang L, Yang Y, Zhang F, Cao J (2017) A genome-wide SNP-based genetic map and QTL mapping for agronomic traits in Chinese cabbage. Sci Rep 7:46305. https://doi.org/10.1038/srep46305
Hwang SF, Strelkov SE, Feng J, Gossen BD, Howard RJ (2012) Plasmodiophora brassicae: a review of an emerging pathogen of the Canadian canola (Brassica napus) crop. Mol Plant Pathol 13(2):105–113. https://doi.org/10.1111/j.1364-3703.2011.00729.x
Ji R, Zhao L, Xing M, Shen X, Bi Q, Peng S, Feng H (2014) Infection of Plasmodiophora brassicae in Chinese cabbage. Genet Mol Res 13(4):10976–10982. https://doi.org/10.4238/2014.December.19.20
Ji R, Wang Y, Wang X, Liu Y, Shen X, Feng H (2018) Proteomic analysis of the interaction between, Plasmodiophora brassicae, and Chinese cabbage (Brassica rapa L. ssp. pekinensis) at the initial infection stage. Sci Hortic 233:386–393. https://doi.org/10.1016/j.scienta.2018.02.006
Kang HM, Saltveit ME (2002) Chilling tolerance of maize, cucumber and rice seedling leaves and roots are differentially affected by salicylic acid. Physiol Plant 115(4):571–576. https://doi.org/10.1034/j.1399-3054.2002.1150411.x
Kayum MA, Park JI, Nath UK, Saha G, Biswas MK, Kim HT, Nou IS (2017) Genome-wide characterization and expression profiling of PDI family gene reveals function as abiotic and biotic stress tolerance in Chinese cabbage (Brassica rapa ssp. pekinensis). BMC Genomics 18:885. https://doi.org/10.1186/s12864-017-4277-2
Koornneef A, Pieterse CMJ (2008) Cross talk in defense signaling. Plant Physiol 146(3):839–844. https://doi.org/10.1104/pp.107.112029
Lemarié S, Robert-Seilaniantz A, Lariagon C, Lemoine J, Marnet N, Jubault M et al (2015) Both the jasmonic acid and the salicylic acid pathways contribute to resistance to the biotrophic clubroot agent Plasmodiophora brassicae in Arabidopsis. Plant Cell Physiol 56(11):2158–2168. https://doi.org/10.1093/pcp/pcv127
Li B, Takahashi D, Kawamura Y, Uemura M (2018) Plasma membrane proteomics of Arabidopsis suspension-cultured cells associated with growth phase using nano-LC–MS/MS. Methods Mol Biol 1696:185–194. https://doi.org/10.1007/978-1-4939-7411-5_12
Li T, Huang Y, Xu ZS, Wang F, Xiong AS (2019) Salicylic acid-induced differential resistance to the tomato yellow leaf curl virus among resistant and susceptible tomato cultivars. BMC Plant Biol 19:173. https://doi.org/10.1186/s12870-019-1784-0
Lovelock DA, Šola I, Marschollek S et al (2016) Analysis of salicylic acid-dependent pathways in Arabidopsis thaliana following infection with Plasmodiophora brassicae and the influence of salicylic acid on disease. Mol Plant Pathol 17:1237–1251. https://doi.org/10.1111/mpp.12361
Mandal S, Mallick N, Mitra A (2009) Salicylic acid-induced resistance to Fusarium oxysporum f sp lycopersici in tomato. Plant Physiol Biochem 47:642–649. https://doi.org/10.1016/j.plaphy.2009.03.001
Matthews BF, Beard H, Brewer E, Kabir S, MacDonald MH, Youssef RM (2014) Arabidopsis genes, AtNPR1, AtTGA2 and AtPR-5, confer partial resistance to soybean cyst nematode (Heterodera glycines) when overexpressed in transgenic soybean roots. BMC Plant Biol 14:96. https://doi.org/10.1186/1471-2229-14-96
Nie P, Li X, Wang S, Guo J, Zhao H, Niu D (2017) Induced systemic resistance against Botrytis cinerea by Bacillus cereus AR156 through a JA/ET- and NPR1-dependent signaling pathway and activates PAMP-triggered immunity in Arabidopsis. Front Plant Sci 8. https://doi.org/10.3389/fpls.2017.00238
Ortiz PA, Bruno ME, Moore T, Nesnow S, Winnik W, Ge Y (2010) Proteomic analysis of propiconazole responses in mouse liver: comparison of genomic and proteomic profiles. J Proteome Res 9:1268–1278. https://doi.org/10.1021/pr900755q
Prasad BD, Creissen G, Lamb C, Chattoo BB (2009) Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis. Mol Plant Microbe Interact 22:1635–1644. https://doi.org/10.1094/MPMI-22-12-1635
Ralhan R, DeSouz LV, Matta A et al (2008) Discovery and verification of head-and-neck cancer biomarkers by differential protein expression analysis using iTRAQ labeling, multidimensional liquid chromatography, and tandem mass spectrometry. Mol Cell Proteomics 7:1162–1173. https://doi.org/10.1074/mcp.M700500-MCP200
Ryals JA, Neuenschwander UH, Willits MG, Molina A, Steiner HY, Hunt MD (1996) Systemic acquired resistance. Plant Cell 8:1809–1819. https://doi.org/10.2307/3870231
Siemens J, Keller I, Sarx J, Kunz S, Ludwig-Müller J (2006) Transcriptome analysis of Arabidopsis clubroots indicate a key role for cytokinins in disease development. Mol Plant Microbe Interact 19(5):480–494. https://doi.org/10.1094/MPMI-19-0480
Song T, Chu M, Lahlali R, Yu F, Peng G (2016) Shotgun label-free proteomic analysis of clubroot (Plasmodiophora brassicae) resistance conferred by the gene Rcr1 in Brassica rapa. Front Plant Sci 7:1013. https://doi.org/10.3389/fpls.2016.01013
Spletzer ME, Enyedi AJ (1999) Salicylic acid induces resistance to Alternaria solani in hydroponically grown tomato. Phytopathology 89(9):722–727. https://doi.org/10.1094/PHYTO.1999.89.9.722
Tommerup IC, Ingram DS (1971) The life-cycle of Plasmodiophora brassicae Woron. in Brassica tissue cultures and intact roots. N Phytol 70:327–332. https://doi.org/10.1111/j.1469-8137.1971.tb02531.x
Wang WQ, Moller IM, Song SQ (2012) Proteomic analysis of embryonic axis of Pisum sativum seeds during germination and identification of proteins associated with loss of desiccation tolerance. J Proteomics 77:68–86. https://doi.org/10.1016/j.jprot.2012.07.005
Waters KM, Pounds JG, Thrall BD (2006) Data merging for integrated microarray and proteomic analysis. Brief Funct Genomics 5(4):261–272. https://doi.org/10.1093/bfgp/ell019
Wei Y, Liu Z, Su Y, Liu D, Ye X (2011) Effect of salicylic acid treatment on postharvest quality, antioxidant activities, and free polyamines of asparagus. J Food Sci 76(2):S126–S132. https://doi.org/10.1111/j.1750-3841.2010.01987.x
Wielkopolan B, Obrepalska-Steplowska A (2016) Three-way interaction among plants, bacteria, and coleopteran insects. Planta 244:313–332. https://doi.org/10.1007/s00425-016-2543-1
Wildermuth MC, Dewdney J, Wu G, Ausubel FM (2001) Isochorismate synthase is required to synthesize salicylic acid for plant defence. Nature 414:562–565. https://doi.org/10.1038/35107108
Williams PH (1966) A system for the determination of races of Plasmodiophora brassicae that infect cabbage and rutabaga. Phytopathology 56(6):624–626
Wu Y, Zhang D, Chu JY et al (2012) The Arabidopsis NPR1 protein is a receptor for the plant defense hormone salicylic acid. Cell Rep 1:639–647. https://doi.org/10.1016/j.celrep.2012.05.008
Wu J, Lee DY, Wang Y, Kim ST, Baek S-B, Kim SG, Kang KY (2014) Protein profiles secreted from phylloplane of rice leaves free from cytosolic proteins: application to study rice–Magnaporthe oryzae interactions. Physiol Mol Plant Pathol 88:28–35. https://doi.org/10.1016/j.pmpp.2014.08.003
Xue S, Cao T, Howard RJ, Hwang SF, Strelkov SE (2008) Isolation and variation in virulence of single-spore isolates of Plasmodiophora brassicae from Canada. Plant Dis 92:456–462. https://doi.org/10.1094/PDIS-92-3-0456
Brasseur C, Brose F, Pirlot A, Douny C, Eppe G, Maghuin-Rogister G et al (2007) Validation of the analytical procedure for the determination of polyaromatic hydrocarbons in smoke flavourings using high performance liquid chromatography coupled to an ultraviolet, diode array or fluorescence detector. Accredit Qual Assur 12(10):535–542. https://doi.org/10.1007/s00769-007-0295-0
Zhang W, Corwin JA, Copeland D et al (2017) Plastic transcriptomes stabilize immunity to pathogen diversity: the jasmonic acid and salicylic acid networks within the Arabidopsis/Botrytis Pathosystem. Plant Cell 29:2727–2752. https://doi.org/10.1105/tpc.17.00348
Kushnir MM, Rockwood AL, Roberts WL, Yue B, Bergquist J, Meikle AW (2011) Liquid chromatography tandem mass spectrometry for analysis of steroids in clinical laboratories. Clin Biochem 44(1):77–88. https://doi.org/10.1016/j.clinbiochem.2010.07.008
Zhu H, Zhai W, Li X, Zhu Y (2019) Two QTLs controlling clubroot resistance identified from bulked segregant sequencing in Pakchoi (Brassica campestris ssp. chinensis Makino). Sci Rep 9:9228. https://doi.org/10.1038/s41598-019-44724-z
Acknowledgements
This work was supported by the National Natural Science Foundation of China (Grant Number 31972412) and the Natural Science Foundation of Liaoning Province (Grant Number 2019-MS-283). We would like to thank Editage (www.editage.cn) for English language editing.
Author information
Authors and Affiliations
Contributions
Conceptualization, RJ and HF; Data curation, RJ, SG and QB; Formal analysis, RJ and SG; Funding acquisition, RJ and HF; Investigation, QB and YW; Methodology, RJ, SG, QB, YW, ML and WG; Project administration, RJ; Supervision, HF; Writing: original draft, RJ and SG; Writing: review and editing, SG, QB, YW, ML, WG and HF.
Corresponding author
Ethics declarations
Conflicts of interest
The authors declare that they have no competing interests.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic supplementary material
Below is the link to the electronic supplementary material.
344_2020_10105_MOESM1_ESM.rar
Supplementary Material (RAR 854 kb) Fig. S1 Standard curve of proteins. Fig. S2 Standard curve of salicylic acid (SA) samples. Fig. S3 Plant hormone signal transduction pathway. Table S1 Sequences of the primers used for quantitative real-time PCR of the differentially expressed proteins between treated and control roots of Brassica rapa L. ssp. pekinensis.Table S2 Sequences of the primers used for quantitative real-time PCR of salicylic acid-related genes. Table S3 Differentially expressed proteins in control (C) and treated (T) roots of Brassica rapa L. ssp. pekinensis in three biological replicates. Table S4 Salicylic acid content in control (C) and treated (T, inoculated with Plasmodiophora brassicae) roots of Brassica rapa L. ssp. pekinensis at two stages. C1, control group at infection stage; C2, control group at the diseased stage; T1, treated group at infection stage; T2, treated group at the diseased stage
Rights and permissions
About this article
Cite this article
Ji, R., Gao, S., Bi, Q. et al. The Salicylic Acid Signaling Pathway Plays an Important Role in the Resistant Process of Brassica rapa L. ssp. pekinensis to Plasmodiophora brassicae Woronin. J Plant Growth Regul 40, 405–422 (2021). https://doi.org/10.1007/s00344-020-10105-4
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00344-020-10105-4