Mammalian Genome

, Volume 7, Issue 4, pp 280–284 | Cite as

Construction of a cytogenetically characterized porcine somatic cell hybrid panel and its use as a mapping tool

  • C. Zijlstra
  • A. A. Bosma
  • N. A. de Haan
  • C. Mellink
Original Contributions

Abstract

A new panel of cytogenetically characterized pigrodent somatic cell hybrids was constructed and tested for twelve microsatellite markers with PCR. Cytogenetic characterization of hybrids was accomplished by fluorescence painting and GTG-banding of metaphase chromosomes. The panel consists of 15 independent pig-hamster and 6 independent pig-mouse cell lines. In the panel, all pig autosomes and the X Chromosome (Chr) are represented, and it is informative for all chromosome pairs except 2–14, 2–15, 3–9, 14–15, 14–16, and 16–17. The microsatellites tested were S0022, S0023, S0084, S0098, SO112, SO113, SO114, S0115, S0117, S0118, S0119, and S0120. The PCR results obtained in the 21 hybrids were compared with the cytogenetic data and analyzed for concordancy and correlation. Eight microsatellites could be assigned to specific pig chromosomes, confirming seven assignments based on linkage analysis.

Keywords

Chromosome Painting Somatic Cell Hybrid Hybrid Cell Line Chromosomal Assignment Rodent Cell Line 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Archibald, A.L., Haley, C.S., Brown, J.F., Couperwhite, S., McQueen, H.A., Nicholson, D., Coppieters, W., van de Weghe, A., Stratil, A., Winterø, A., Fredholm, M., Ursen, N.J., Nielsen, V.H., Milan, D., Woloszyn, N., Robic, A., Dalens, M., Riquet, J., Gellin, J., Caritez, J., Burgaud, G., Ollivier, L., Bidanel, J.-P., Vaiman, M., Renard, C., Geldermann, H., Davoli, R., Ruyter, D., Verstege, E.J.M., Groenen, M.A.M., Davies, W., Høyheim, B., Keiserud, A., Andersson, L., Ellegren, H., Johansson, M., Marklund, L., Miller, J.R., Anderson Dear, D.V., Signer, E., Jeffreys, A.J., Moran, C., Le Tissier, P., Muladno, Rothschild, M.F., Tuggle, C.K., Vaske, D., Helm, J., Liu, H.-C., Rahman, A., Yu, T.-P., Larson, R.G., Schmitz, C.B. (1995). The PigMaP Consortium linkage map of the pig (Sus scrofa). Mamm. Genome 6, 157–175.PubMedCrossRefGoogle Scholar
  2. Ausübel, F.M., Brent, R., Kingston, R.E. (1993). Current Protocols in Molecular Biology. (New York: Green Publishing Associates and John Wiley and Sons).Google Scholar
  3. Chevalet, C., Corpet, F. (1986). Statistical decision rules concerning synteny or independence between markers. Cytogenet. Cell Genet. 43, 132–139.PubMedCrossRefGoogle Scholar
  4. Committee for the Standardized Karyotype of the Domestic Pig (1988). Standard karyotype of the domestic pig. Hereditas 109, 151–157.CrossRefGoogle Scholar
  5. Coppieters, W., van de Weghe, A., Peelman, L., Depicker A., van Zeveren, A., Bouquet, Y. (1993). Characterization of porcine polymorphic microsatellite loci. Anim. Genet. 24, 163–170.PubMedGoogle Scholar
  6. Deng, A.Y., Gu, L., Rapp, J.P., Szpirer, J. (1994). Chromosomal assignment of 11 loci in the rat by mouse-rat somatic hybrids and linkage. Mamm. Genome 5, 712–716.PubMedCrossRefGoogle Scholar
  7. Ellegren, H., Johansson, M., Chowdhary, B.P., Marklund, S., Ruyter, D., Marklund, L., Bräuner-Nielsen, P., Edfors-Lilja, I., Gustavsson, I., Juneja, R.K., Andersson, L. (1993). Assignment of 20 microsatellite markers to the porcine linkage map. Genomics 16, 431–439.PubMedCrossRefGoogle Scholar
  8. Frengen, E., Thomsen, P., Kristensen, T., Kran, S., Miller, R., Davies, W. (1991). Porcine SINEs: characterization and use in species-specific amplification. Genomics 10, 949–956.PubMedCrossRefGoogle Scholar
  9. Groenen, M.A.M., Ruyter, D., Verstege, E.J.M., de Vries, M., van der Poel, J.J. (1995). Development and mapping of 10 porcine microsatellite markers. Anim. Genet. 26, 115–118.PubMedGoogle Scholar
  10. Pack, S.D., Bedanov, V.M., Sokolova, O.V., Zhdanova, N.S., Matveeva, N.M., Serov, O.L. (1992). Characterization of a new hybrid mink-mouse clone panel: chromosomal and regional assignments of the GLO, ACY, CKBB, ADH2, and ME1 loci in mink (Mustelsa vison). Mamm. Genome 3, 112–118.PubMedCrossRefGoogle Scholar
  11. Rettenberger, G., Fries, R., Engel, W., Scheit, K.L., Dolf, G., Hameister, H. (1994a). Establishment of a partially informative porcine somatic cell hybrid panel and assignment of the loci for the transition protein 2 (TNP2) and protamine 1 (PRM1) to chromosome 3 and polyubiquitin (UBC) to chromosome 4. Genomics 21, 558–566.PubMedCrossRefGoogle Scholar
  12. Rettenberger, G., Fredholm, M., Fries, R. (1994b). Chromosomal assignment of porcine microsatellites by use of a somatic cell hybrid mapping panel. Anim. Genet. 25, 343–345.PubMedGoogle Scholar
  13. Rettenberger, G., Adham, I.M., Engel, W., Klett, C., Hameister, H. (1994c). Assignment of the porcine transition protein, (TNP1), to chromosome 15q24-q25 by fluorescence in situ hybridisation (FISH). Mamm. Genome 5, 249–250.PubMedCrossRefGoogle Scholar
  14. Ruyter, D., Verstege, A.J.M., van der Poel, J.J., Groenen, M.A.M. (1994a). Five porcine polymorphic microsatellite markers. Anim. Genet. 25, 53.PubMedGoogle Scholar
  15. Ruyter, D., Johansson, M., Groenen, M., Andersson, L. (1994b). A porcine polymorphic microsatellite locus (S0098). Anim. Genet. 25, 198.PubMedGoogle Scholar
  16. Szpirer, J., Levan, G., Thorn, M., Szpirer, C. (1984). Gene mapping in the rat by mouse-rat somatic cell hybridization: synteny of the albumin and α-fetoprotein genes and assignment to chromosome 4. Cytogenet. Cell Genet. 38, 142–149.PubMedCrossRefGoogle Scholar
  17. Yerle, M., Lahbib-Mansais, Y., Mellink, C., Goureau, A., Pinton, P., Echard, G., Gellin, J., Zijlstra, C., de Haan, N., Bosma, A.A., Chowdhary, B., Feng, G., Gustavsson, I., Thomsen, P.D., Christensen, K., Rettenberger, G., Hameister, H., Schmitz, A., Chaput, B., Frelat, G. (1995). The PiGMaP Consortium cytogenetic map of the domestic pig (Sus scrofa domestica). Mamm. Genome 6, 176–186.PubMedCrossRefGoogle Scholar
  18. Zhang, Y., Flejter, W.L., Barcroft, C.L., Rivière, M., Szpirer, J., Szpirer, C., Bina, M. (1995). Localization of the human HTF4 transcription factor 4 gene (TCF12) to chromosome 15q21. Cytogenet. Cell Genet. 68, 235–238.PubMedCrossRefGoogle Scholar
  19. Zhdanova, N.S., Astakhova, N.M., Kuznetsov, S.B., Schuler, L., Serov, O.L. (1994). Characterization of pig-mink cell hybrids: assignment of the TK1 and UMPH2 genes to pig chromosome 12. Mamm. Genome 5, 781–784.PubMedCrossRefGoogle Scholar
  20. Zijlstra, C., Bosma, A.A., de Haan, N.A. (1994). Comparative study of pig-rodent somatic cell hybrids. Anim. Genet. 25, 319–327.PubMedCrossRefGoogle Scholar

Copyright information

© Springer-Verlag 1996

Authors and Affiliations

  • C. Zijlstra
    • 1
  • A. A. Bosma
    • 1
  • N. A. de Haan
    • 1
  • C. Mellink
    • 1
  1. 1.Department of Cell Biology and Histology, Faculty of Veterinary MedicineUtrecht UniversityTD UtrechtThe Netherlands

Personalised recommendations