Identification of autophagy-related genes ATG4 and ATG8 from wheat (Triticum aestivum L.) and profiling of their expression patterns responding to biotic and abiotic stresses
- 1k Downloads
- 13 Citations
Abstract
Key message
The genes coding for wheat ATG4 and ATG8 were cloned and their roles in autophagy were verified. Implications of ATG4/ATG8 in wheat responses to stresses were suggested by expression profiling.
Abstract
Autophagy-related proteins ATG4 and ATG8 are crucial for autophagy biogenesis. ATG4 processes ATG8 precursor to expose its C-terminal glycine for phosphatidyl ethanolamine (PE) lipidation. ATG8, in the form of ATG8-PE adduct, functions in the organization dynamics of autophagic membranes. Here, we report the identification of two/nine members of the ATG4/ATG8 family from common wheat (Triticum aestivum L.). Expression of each wheat ATG4/ATG8 could complement the autophagy activity of yeast atg4/atg8 mutant cells. GFP fusion proteins of ATG8s, especially of ATG8s with innate C-terminal-exposed glycines, localized to punctate autophagic membranes. Both of purified ATG4s could cleave ATG8s in vitro, but they had different activities and different preferences for ATG8 substrates. Two times of transcript accumulation, an early one and a late one, of ATG4s/ATG8s were detected in the early phases of the Pm21- and Pm3f-triggered wheat incompatible reactions to the powdery mildew causal fungus Blumeria graminis f. sp. tritici (Bgt), and fluorescence microscopy also revealed a Bgt-induced enhanced wheat autophagy level in the Pm21-triggered incompatible reaction. Only one time of Bgt-induced transcript accumulation of ATG4s/ATG8s, corresponding to but much higher than the late one in incompatible reactions, was detected in a susceptible line isogenic to the Pm21 resistance line. These results suggested positive roles of ATG4/ATG8-associated autophagy process in the early stage and possible negative roles in the late stage of wheat immunity response to Bgt. In addition, expression of wheat ATG4s/ATG8s was also found to be upregulated by abiotic stress factors and distinctively regulated by different phytohormones.
Keywords
Autophagy ATG4 ATG8 Powdery mildew Triticum aestivum LAbbreviations
- ATG
Autophagy-related gene
- PE
Phosphatidyl ethanolamine
- EST
Expressed sequence tag
- ORF
Open reading frame
- GFP
Green fluorescent protein
- ET
Ethylene
- SA
Salicylic acid
- MeJA
Methyl jasmonate
- ABA
Abscisic acid
- PEG
Polyethylene glycol
- qRT-PCR
Quantitative real-time PCR
- TA
Transcript accumulation
Notes
Acknowledgments
This work was supported by the Natural Science Foundation of Tianjin, China (Grant number 12JCZDJC23000); the Fok Ying-Tong Education Foundation for Young Teachers in the Higher Education Institutions of China (Grant number 131026); and the Open Fund of Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University (Grant number 52LX12).
Conflict of interest
The authors do not have any conflict of interest.
Supplementary material
References
- Bassham DC (2007) Plant autophagy-more than a starvation response. Curr Opin Plant Biol 10:587–593PubMedCrossRefGoogle Scholar
- Bassham DC (2009) Function and regulation of macroautophagy in plants. Biochim Biophys Acta 9:1397–1403CrossRefGoogle Scholar
- Bassham DC, Laporte M, Marty F, Moriyasu Y, Ohsumi Y, Olsen LJ, Yoshimoto K (2006) Autophagy in development and stress responses of plants. Autophagy 2:2–11PubMedCrossRefGoogle Scholar
- Chung T, Suttangkakul A, Vierstra RD (2009) The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability. Plant Physiol 149:220–234PubMedCrossRefPubMedCentralGoogle Scholar
- Doelling JH, Walker JM, Friedman EM, Thompson AR, Vierstra RD (2002) The APG8/12-activating enzyme APG7 is required for proper nutrient recycling and senescence in Arabidopsis thaliana. J Biol Chem 277:33105–33114PubMedCrossRefGoogle Scholar
- Fujiki Y, Yoshimoto K, Ohsumi Y (2007) An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol 143:1132–1139PubMedCrossRefPubMedCentralGoogle Scholar
- Fujioka Y, Noda NN, Fujii K, Yoshimoto K, Ohsumi Y, Inagaki F (2008) In vitro reconstitution of plant Atg8 and Atg12 conjugation systems essential for autophagy. J Biol Chem 283:1921–1928PubMedCrossRefGoogle Scholar
- Gietz RD, Schiestl RH (2007) Quick and easy yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat Protoc 2:35–37PubMedCrossRefGoogle Scholar
- Hanada T, Noda NN, Satomi Y, Ichimura Y, Fujioka Y, Takao T et al (2007) The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy. J Biol Chem 282:37298–37302PubMedCrossRefGoogle Scholar
- Hanaoka H, Noda T, Shirano Y, Kato T, Hayashi H, Shibata D et al (2002) Leaf senescence and starvation induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol 129:1181–1193PubMedCrossRefPubMedCentralGoogle Scholar
- Hayward AP, Dinesh-Kumar SP (2011) What can plant autophagy do for an innate immune response? Annu Rev Phytopathol 49:557–576PubMedCrossRefGoogle Scholar
- Hofius D, Schultz-Larsen T, Joensen J, Tsitsigiannis DI, Petersen NH, Mattsson O et al (2009) Autophagic components contribute to hypersensitive cell death in Arabidopsis. Cell 137:773–783PubMedCrossRefGoogle Scholar
- Hückelhoven R, Kogel KH (2003) Reactive oxygen intermediates in plant-microbe interactions: who is who in powdery mildew resistance? Planta 216:891–902PubMedGoogle Scholar
- Inoue Y, Suzuki T, Hattori M, Yoshimoto K, Ohsumi Y, Moriyasu Y (2006) AtATG genes, homologs of yeast autophagy genes, are involved in constitutive autophagy in Arabidopsis root tip cells. Plant Cell Physiol 47:1641–1652PubMedCrossRefGoogle Scholar
- Jia J, Zhao S, Kong X, Li Y, Zhao G, He W et al (2013) Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 496:91–95PubMedCrossRefGoogle Scholar
- Kabbage M, Williams B, Dickman MB (2013) Cell death control: the interplay of apoptosis and autophagy in the pathogenicity of Sclerotinia sclerotiorum. PLoS Pathog 9:e1003287PubMedCrossRefPubMedCentralGoogle Scholar
- Ketelaar T, Voss C, Dimmock SA, Thumm M, Hussey PJ (2004) Arabidopsis homologues of the autophagy protein Atg8 are a novel family of microtubule binding proteins. FEBS Lett 567:302–306PubMedCrossRefGoogle Scholar
- Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K et al (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8:445–544PubMedCrossRefPubMedCentralGoogle Scholar
- Kuzuoglu-Ozturk D, Cebeci Yalcinkaya O, Akpinar BA, Mitou G, Korkmaz G, Gozuacik D, Budak H (2012) Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response. Planta 236:1081–1092PubMedCrossRefGoogle Scholar
- Kwon SI, Cho HJ, Kim SR, Park OK (2013) The Rab GTPase RabG3b positively regulates autophagy and immunity-associated hypersensitive cell death in Arabidopsis. Plant Physiol 161:1722–1736PubMedCrossRefPubMedCentralGoogle Scholar
- Lai Z, Wang F, Zheng Z, Fan B, Chen Z (2011) A critical role of autophagy in plant resistance to necrotrophic fungal pathogens. Plant J 66:953–968PubMedCrossRefGoogle Scholar
- Lenz HD, Haller E, Melzer E, Kober K, Wurster K, Stahl M et al (2011) Autophagy differentially controls plant basal immunity to biotrophic and necrotrophic pathogens. Plant J 66:818–830PubMedCrossRefGoogle Scholar
- Li F, Vierstra RD (2012) Autophagy: a multifaceted intracellular system for bulk and selective recycling. Trends Plant Sci 17:526–537PubMedCrossRefGoogle Scholar
- Ling HQ, Zhao S, Liu D, Wang J, Sun H, Zhang C et al (2013) Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496:87–90PubMedCrossRefGoogle Scholar
- Liu Y, Bassham DC (2012) Autophagy: pathways for self-eating in plant cells. Annu Rev Plant Biol 63:215–237PubMedCrossRefGoogle Scholar
- Liu GS, Sheng XY, Greenshields DL, Ogieglo A, Kaminskyj S, Selvaraj G, Wei YD (2005) Profiling of wheat class III peroxidase genes derived from powdery mildew-attacked epidermis reveals distinct sequence-associated expression patterns. Mol Plant Microbe Interact 18:730–741PubMedCrossRefGoogle Scholar
- Liu Y, Schiff M, Czymmek K, Tallóczy Z, Levine B, Dinesh-Kumar SP (2005) Autophagy regulates programmed cell death during the plant innate immune response. Cell 121:567–577PubMedCrossRefGoogle Scholar
- Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT Method. Methods 25:402–408PubMedCrossRefGoogle Scholar
- Mariño G, Uría JA, Puente XS, Quesada V, Bordallo J, López-Otín C (2003) Human autophagins, a family of cysteine proteinases potentially implicated in cell degradation by autophagy. J Biol Chem 278:3671–3678PubMedCrossRefGoogle Scholar
- Mitou G, Budak H, Gozuacik D (2009) Techniques to study autophagy in plants. Int J Plant Genomics 2009:451357PubMedCrossRefPubMedCentralGoogle Scholar
- Mizushima N, Noda T, Yoshimori T, Tanaka Y, Ishii T, George MD et al (1998) A protein conjugation system essential for autophagy. Nature 395:395–398PubMedCrossRefGoogle Scholar
- Moriyasu Y, Hattori M, Jauh G, Rogers JC (2003) Alpha tonoplast intrinsic protein is specifically associated with vacuole membrane involved in an autophagic process. Plant Cell Physiol 44:795–802PubMedCrossRefGoogle Scholar
- Nair U, Yen WL, Mari M, Cao Y, Xie Z, Baba M et al (2012) A role for Atg8-PE deconjugation in autophagosome biogenesis. Autophagy 8:780–793PubMedCrossRefPubMedCentralGoogle Scholar
- Nakatogawa H, Ichimura Y, Ohsumi Y (2007) Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion. Cell 130:165–178PubMedCrossRefGoogle Scholar
- Ohsumi Y (2001) Molecular dissection of autophagy: two ubiquitin-like systems. Nat Rev Mol Cell Biol 2:211–216PubMedCrossRefGoogle Scholar
- Patel S, Dinesh-Kumar SP (2008) Arabidopsis ATG6 is required to limit the pathogen-associated cell death response. Autophagy 4:20–27PubMedCrossRefGoogle Scholar
- Pérez-Pérez ME, Lemaire SD, Crespo JL (2012) Reactive oxygen species and autophagy in plants and algae. Plant Physiol 160:156–164PubMedCrossRefPubMedCentralGoogle Scholar
- Reggiori F, Klionsky DJ (2013) Autophagic processes in Yeast: mechanism, machinery and regulation. Genetics 194:341–361PubMedCrossRefPubMedCentralGoogle Scholar
- Romanov J, Walczak M, Ibiricu I, Schüchner S, Ogris E, Kraft C, Martens S (2012) Mechanism and functions of membrane binding by the Atg5-Atg12/Atg16 complex during autophagosome formation. EMBO J 31:4304–4317PubMedCrossRefPubMedCentralGoogle Scholar
- Scott A, Wyatt S, Tsou PL, Robertson D, Allen NS (1999) Model system for plant cell biology: GFP imaging in living onion epidermal cells. Biotechniques 26(1125):1128–1132Google Scholar
- Su W, Ma H, Liu C, Wu J, Yang J (2006) Identification and characterization of two rice autophagy associated genes, OsAtg8 and OsAtg4. Mol Biol Rep 33:273–278PubMedCrossRefGoogle Scholar
- Wang Y, Nishimura MT, Zhao T, Tang D (2011) ATG2, an autophagy-related protein, negatively affects powdery mildew resistance and mildew-induced cell death in Arabidopsis. Plant J 68:74–87PubMedCrossRefGoogle Scholar
- Woo J, Park E, Dinesh-Kumar SP (2014) Differential processing of Arabidopsis ubiquitin-like Atg8 autophagy proteins by Atg4 cysteine proteases. Proc Natl Acad Sci USA 111:863–868PubMedCrossRefPubMedCentralGoogle Scholar
- Wu F, Li Y, Wang F, Noda NN, Zhang H (2012) Differential function of the two Atg4 homologues in the aggrephagy pathway in Caenorhabditis elegans. J Biol Chem 287:29457–29467PubMedCrossRefPubMedCentralGoogle Scholar
- Xia K, Liu T, Ouyang J, Wang R, Fan T, Zhang M (2011) Genome-wide identification, classification, and expression analysis of autophagy-associated gene homologues in rice (Oryza sativa L.). DNA Res 18:363–377PubMedCrossRefPubMedCentralGoogle Scholar
- Xia T, Xiao D, Liu D, Chai W, Gong Q, Wang NN (2012) Heterologous expression of ATG8c from Soybean Confers Tolerance to Nitrogen Deficiency and Increases Yield in Arabidopsis. PLoS one 7:e37217PubMedCrossRefPubMedCentralGoogle Scholar
- Xie Z, Klionsky DJ (2007) Autophagosome formation: core machinery and adaptations. Nat Cell Biol 9:1102–1109PubMedCrossRefGoogle Scholar
- Xie Z, Nair U, Klionsky DJ (2008) Atg8 controls phagophore expansion during autophagosome formation. Mol Biol Cell 19:3290–3298PubMedCrossRefPubMedCentralGoogle Scholar
- Yoshimoto K (2012) Beginning to understand autophagy, an intracellular self-degradation system in plants. Plant Cell Physiol 53:1355–1365PubMedCrossRefGoogle Scholar
- Yoshimoto K, Hanaoka H, Sato S, Kato T, Tabata S, Noda T, Ohsumi Y (2004) Processing of ATG8 s, ubiquitin-Like Proteins, and their deconjugation by ATG4 s are essential for plant autophagy. Plant Cell 16:2967–2983PubMedCrossRefPubMedCentralGoogle Scholar
- Yoshimoto K, Jikumaru Y, Kamiya Y, Kusano M, Consonni C, Panstruga R et al (2009) Autophagy negatively regulates cell death by controlling NPR1-dependent salicylic acid signaling during senescence and the innate immune response in Arabidopsis. Plant Cell 21:2914–2927PubMedCrossRefPubMedCentralGoogle Scholar