Screening for amyloid proteins in the yeast proteome
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The search for novel pathological and functional amyloids represents one of the most important tasks of contemporary biomedicine. Formation of pathological amyloid fibrils in the aging brain causes incurable neurodegenerative disorders such as Alzheimer’s, Parkinson’s Huntington’s diseases. At the same time, a set of amyloids regulates vital processes in archaea, prokaryotes and eukaryotes. Our knowledge of the prevalence and biological significance of amyloids is limited due to the lack of universal methods for their identification. Here, using our original method of proteomic screening PSIA–LC–MALDI, we identified a number of proteins that form amyloid-like detergent-resistant aggregates in Saccharomyces cerevisiae. We revealed in yeast strains of different origin known yeast prions, prion-associated proteins, and a set of proteins whose amyloid properties were not shown before. A substantial number of the identified proteins are cell wall components, suggesting that amyloids may play important roles in the formation of this extracellular protective sheath. Two proteins identified in our screen, Gas1 and Ygp1, involved in biogenesis of the yeast cell wall, were selected for detailed analysis of amyloid properties. We show that Gas1 and Ygp1 demonstrate amyloid properties both in vivo in yeast cells and using the bacteria-based system C-DAG. Taken together, our data show that this proteomic approach is very useful for identification of novel amyloids.
KeywordsAmyloid Prion Yeast Proteomic screen Gas1 Ygp1
The authors acknowledge Dr. A.A. Aleksandrov for critical reading of the manuscript. Special thanks go to Dr. A. Hochschild for providing the bacterial C-DAG system. The authors acknowledge St. Petersburg State University for opportunity to use facilities of the Research Resource Center for Molecular and Cell Technologies and the Resource Centers “CHROMAS” of SPbSU. This work was partially supported by the grant of SPbSU to A.P.G. and by the Russian Foundation for Basic Research (14-04-01463to A.P.G. and 16-34-60153 to A.A.N). The experiments on proteomic screening were supported by the Russian Science Foundation 14-50-00069 to SPbSU.
- Allen KD, Wegrzyn RD, Chernova TA, Müller S, Newnam GP, Winslett PA, Wittich KB, Wilkinson KD, Chernoff YO (2005) Hsp70 chaperones as modulators of prion life cycle. Novel effects of Ssa and Ssb on the Saccharomyces cerevisiae Prion [PSI+]. Genetics 169:1227–1242CrossRefPubMedPubMedCentralGoogle Scholar
- Bezsonov EE, Groenning M, Galzitskaya OV, Gorkovskii AA, Semisotnov GV, Selyakh IO, Ziganshin RH, Rekstina VV, Kudryashova IB, Kuznetsov SA, Kulaev IS, Kalebina TS (2013) Amyloidogenic peptides of yeast cell wall glucantransferase Bgl2p as a model for the investigation of its pH-dependent fibril formation. Prion 7:175–184. doi: 10.4161/pri.22992 CrossRefPubMedPubMedCentralGoogle Scholar
- Majumdar A, Cesario WC, White-Grindley E, Jiang H, Ren F, Khan MR, Li L, Choi EM, Kannan K, Guo F, Unruh J, Slaughter B, Si K (2012) Critical role of amyloid-like oligomers of Drosophila Orb2 in the persistence of memory. Cell 148:515–529. doi: 10.1016/j.cell.2012.01.004 CrossRefPubMedGoogle Scholar
- Park SK, Hong JY, Arslan F, Kanneganti V, Patel B, Tietsort A, Tank EMH, Li X, Barmada SJ, Liebman SW (2017) Overexpression of the essential Sis1 chaperone reduces TDP-43 effects on toxicity and proteolysis. PLoS Genet 13:e1006805. doi: 10.1371/journal.pgen.1006805 CrossRefPubMedPubMedCentralGoogle Scholar