Serum-free freezing media support high cell quality and excellent ELISPOT assay performance across a wide variety of different assay protocols
Robust and sensitive ELISPOT protocols are commonly applied concomitant with the development of new immunotherapeutics. Despite the knowledge that individual serum batches differ in their composition and may change properties over time, serum is still commonly used in immunologic assays. Commercially available serum batches are expensive, limited in quantity and need to be pretested for suitability in immunologic assays, which is a laborious process. The aim of this study was to test whether serum-free freezing media can lead to high cell viability and favorable performance across multiple ELISPOT assay protocols. Thirty-one laboratories from ten countries participated in a proficiency panel organized by the Cancer Immunotherapy Immunoguiding Program to test the influence of different freezing media on cell quality and immunologic function. Each center received peripheral blood mononuclear cells which were frozen in three different media. The participants were asked to quantify antigen-specific CD8+ T-cell responses against model antigens using their locally established IFN-gamma ELISPOT protocols. Self-made and commercially available serum-free freezing media led to higher cell viability and similar cell recovery after thawing and resting compared to freezing media supplemented with human serum. Furthermore, the test performance as determined by (1) background spot production, (2) replicate variation, (3) frequency of detected antigen-specific spots and (4) response detection rate was similar for serum and serum-free conditions. We conclude that defined and accessible serum-free freezing media should be recommended for freezing cells stored for subsequent ELISPOT analysis.
KeywordsELISPOT Cryopreservation Serum-free Assay harmonization
In contrast to classical treatments in oncology that affect tumor cells directly (chemotherapy, radiation, small molecules, monoclonal antibodies targeting tumor-associated antigens), immunotherapies which aim at inducing T-cell immune responses affect tumor cells indirectly. The broad acknowledgment of these conceptual differences for T-cell vaccine led to a dedicated regulatory guidance for therapeutic cancer vaccines, and the acknowledgment to perform concomitant studies of the magnitude, phenotype and function of vaccine-induced immune responses to better understand the anticipated mode of action and to guide the development of new vaccines [1, 2, 3]. Indeed, immunologic monitoring has nearly become a “must have” already at early stages of rational vaccine development. Although it is still under debate which immunologic assays should be applied and whether immunologic monitoring should be performed in the peripheral blood or the tumor tissue, it is a fact that hundreds of laboratories worldwide use ELISPOT assays and flow cytometric analysis to monitor vaccine-induced immune responses in peripheral blood mononuclear cells (PBMCs). In addition, an increasing number of reports confirm a correlation between the results of T-cell immune assays and clinical events, which suggests that immunologic monitoring in the peripheral compartment will remain to be important and should be applied complementary to assays in the tumor tissue [4, 5, 6, 7].
The Immunoguiding Program of the Cancer Immunotherapy Association (CIMT-CIP) together with the Cancer Research Institute’s Cancer Immunotherapy Consortium (CRI-CIC) initiated a large-scale proficiency testing program for the most commonly used T-cell assays and over the last 8 years established the concept of immune assay harmonization in a field-wide effort including more than 100 laboratories [8, 9]. Past proficiency panels have focused on various aspects of the ELISPOT technology including first harmonization guidelines for assay conduct [10, 11], recommendations for response determination , a framework for structured reporting of T-cell assay results , as well as systematic studies of the impact of different test media on assay results [14, 15]. Indeed, two independent proficiency panels conducted by CIP and CRI-CIC and a third study from the infectious disease field showed that serum-free media can support excellent assay performance in the ELISPOT assay .
Materials and methods
The ELISPOT proficiency panel was conducted with a group of 31 centers. Twenty-six participating laboratories were located in 9 European countries (Denmark, France, Germany, Italy, The Netherlands, Spain, Sweden, Switzerland and the United Kingdom). Fourteen of these laboratories were prior participants of CIP proficiency panels, and twelve laboratories participated for the first time. In addition, five laboratories (4× US and 1× Germany) were recruited from the CRI-CIC proficiency panel program that collaborated in this study. Each laboratory received an individual laboratory ID number and was assigned to one of three subgroups of similar size (10, 12 and 10 laboratories, respectively). One participating laboratory analyzed PBMCs from all three subgroups and generated three completed independent data sets. One participant observed an enormous background spot production in all tested donor–antigen combinations, which made the evaluation of the results impossible. This data set was therefore excluded from the final analysis. Consequently, we obtained 32 evaluable data sets from the 31 participating laboratories. The following “Materials and methods” section was prepared compliant to the MIATA guidelines for structured reporting of T-cell experiments .
PBMCs were isolated from buffy coats obtained from thirteen healthy HLA-A*0201 donors after informed consent at the Transfusion Center, University Medical Center Mainz, Germany. Within 24 h after collection, PBMCs were separated by Ficoll gradient centrifugation and cryopreserved in three different freezing media at 15 million (Mio) cells per vial (A = 90 % heat-inactivated human AB serum (pooled from blood donations from local donors) + 10 % DMSO, B = CryoMaxx II (PAA, Pasching, Austria), C = 10 % human serum albumin (CSL Behring, Marburg, Germany) + 10 % DMSO + 80 % RPMI (Gibco Invitrogen, Darmstadt, Germany) using an automated controlled-rate freezing device (Sy-Lab 14S-B, Neupurkersdorf, Austria). The three media were selected based on results from the survey asking for preferences in participating laboratories.
PBMCs were transferred to the vapor phase of liquid nitrogen and stored until shipment on dry ice to European laboratories (2–20 h transfer time) or shipment in liquid nitrogen shippers for the four US laboratories (32–56 h transfer time). Shipped PMBCs were stored at −80 °C after receipt and thawed after duration of 2–12 weeks at the day of the experiment.
All donor PBMCs were thawed and pretested at least 2 times in IFN-gamma ELISPOT for reactivity against the HLA-A*0201-restricted model epitopes hCMVpp65495–503 (NLVPMVATV), FLU M158–66 (GILGFVFTL) and EBV BMLF1280–288 (GLCTLVAML). Six donors were selected based on a cell viability of >90 % as determined with a Guava counter in at least 2 independent thawed samples for all three selected freezing medium conditions. Distributed samples in each of the three subgroups were confirmed to have reactivity in four different donor–antigen combinations.
Each participating laboratory received PBMCs from two of the six preselected donors, each frozen in the three different freezing media (A, B and C) and three peptides (CMV, FLU, EBV) for antigenic stimulation. Participants had to thaw all cells using their preferred thawing procedure and determine the number of recovered PBMCs as well as the viability (%) after thawing and resting (a resting phase was recommended but not mandatory for laboratories that have SOPs that do not utilize a resting phase). Eighteen centers performed manual counting using a microscope and Trypan blue exclusion, 11 centers used Guava Counters, and three centers used other methods (CD45/7AAD, Nexcelom Cellometer, Vi-Cell XR). Results obtained for cell viability and recovery in the three tested medium conditions were compared using an unpaired, two-sided t test (p = 0.05).
For experiments performed at the central laboratory (Mainz), PBMCs from six healthy HLA-A*0201 buffy coats donors (donors 1–6) were collected after informed consent was obtained. The buffy coats were obtained from the Transfusion Center, University of Mainz, Germany. Within 24 h after collection, PBMCs of each donor were separated by Ficoll gradient centrifugation and cryopreserved in 7 different freezing media at 16 × 106 cells per vial: the first three freezing media (A, B and C) correspond to the freezing media tested in the proficiency panel (see above). In addition, the following four freezing media were utilized: (D) CryoKit ABC (CTL, Bonn, Germany), (E) 90 % inactivated FCS + 10 % DMSO, (F) 12.5 % Albumin bovine Fraction V (Serva, Heidelberg, Germany) + 77.5 % RPMI + 10 % DMSO, (G) 12,5 % BSA + 77.5 % RPMI + 5 % DMSO + 5 % hydroxyethyl starch (Fresenius Kabi, Bad Homburg, Germany). PBMCs were frozen using an automated controlled-gradient freezing device (Sy-Lab 14S-B, Neupurkersdorf, Austria) and then transferred into the vapor phase of liquid nitrogen.
IFN-gamma ELISPOT assay
Participants were asked to quantify antigen-specific T-cell responses against the three peptides (stock solution at 1 μg/μl in 10 % DMSO) that were shipped together with the PBMCs on dry ice to the European laboratories and in liquid nitrogen to the 5 US laboratories. Peptides had to be used at a final concentration of 1 μg/ml. The positive control could be chosen by the participants. In order to facilitate the analysis of data generated, participants received a plate layout that included six replicates of the MOCK control (cells plus medium and no peptide), three peptide antigens added as triplicates and 1 well of positive control for each of the six donor-freezing medium conditions. The laboratories were free to use their own protocol and reagents according to their laboratory SOPs. They had to complete a questionnaire to provide basic information on the ELISPOT operating procedure, such as plates, antibodies, incubation time and staining procedure. For experiments performed at the central laboratory, Multiscreen HA-plates MAHA S45 (Millipore, Darmstadt, Germany) were coated with 50 μl per well of antihuman IFN-γ (7.5 μg/ml, clone Mab 1-D1K, Mabtech) on day 1. The plate was stored overnight at RT. On Day 2, the coating antibody was discarded. The plate was washed 3 times with PBS (Gibco Invitrogen, Darmstadt, Germany) and blocked with X-Vivo (Lonza, Basel, Switzerland) containing 2 % HSA for 1–4 h at 37 °C, 5 % CO2. The PBMCs were thawed and the number of recovered PBMCs as well as the viability (%) after thawing and 2-h resting determined. The cells were rested at a concentration of 1 Mio/ml in OpTmizer™ CTS™ T-Cell Expansion SFM (Invitrogen, Darmstadt, Germany) for 2 h at 37 °C, 5 % CO2 in 50 ml tubes. The median cell recovery after thawing was 13.3 × 106 with a median viability of 95 %. After resting, the median cell loss was 25.1 %. Cell counts and viability was obtained using a Guava counter EasyCyte 5HT and the ViaCount kit. After resting, the PBMCs were washed and resuspended at 2 × 106 cells/ml in OpTmizer. 150 μl PBMCs per well were added to a final cell number of 300,000 cells per well. 50 μl per well of the peptides hCMV pp65495–503 (NLVPMVATV) and FLU M158–66 (GILGFVFTL) were added as triplicates. SEB was added to one well as positive control to a final concentration of 1 μg/ml. In six wells, cells plus medium was added, without peptide (medium control). The plates were incubated at 37 °C, 5 % CO2 overnight. On Day 3, the plate was washed and 60 μl per well of the detection antibody Biotin antihuman IFN-γ (1 μg/ml, clone Mab 7-B6-1, Mabtech) was added. After 2-h incubation at 37 °C, 5 % CO2, the plate was washed and 100 μl per well of the enzyme avidin-alkaline phosphatase (1:100, Sigma) was added. After 1-h incubation at RT and washing the plate, 100 μl per well of the BCIP/NBT (Sigma) was added according to the manufacture’s instructions. After 3–5 min, the staining reaction was stopped by washing the wells under running water. No internal assay controls were used except for six medium control wells to determine the background spot production.
Participants analyzed the plates using their preferred protocol, hardware and software. The results obtained by the ELISPOT reader were controlled by human auditing in 28 of 31 laboratories. Representative ELISPOT filter plates from the proficiency panel phase and the series of experiments performed in Mainz are shown in supplementary figures 1 and 2.
For experiments performed in the central laboratory, the filter plates were analyzed with the CTL ELISPOT reader using the ImmunoSpot 5.0.3 software and a locally established SOP for plate reading. The results obtained by the reader were verified by human auditing. A representative data set is shown in supplementary figure 2.
Analysis of data
The ELISPOT analysis was performed based on the spot numbers reported by the participants.
For experiments performed at the central laboratory, median background reactivity was 2 spots per 100,000 cells, with a range of 0–33 spots. Antigen-specific spots were determined by subtracting the mean spot number in the six medium control wells from the mean spot number in the experimental triplicates. The response determination in this panel was made using a previously published approach for response determination (p value of <0.05 . A Web-based interface for facilitated response determination can be found at http://www.scharp.org/zoe/runDFR/. Raw data of all experiments can be provided upon request.
Participating laboratories operated under different principles, varying from exploratory research to good clinical laboratory practice (GCLP) and good laboratory practice (GLP). Some laboratories used established laboratory protocols, and other laboratories worked with standard operating protocols (SOPs). Most participants reported to be experienced in the ELISPOT technology. Only two participants had no experience.
The central laboratory is working under exploratory research conditions. Work steps for PBMC preparation (cell isolation, freezing, thawing) were performed using laboratory SOPs. The cell staining protocol and filter plate analysis were performed per SOP. The ELISPOT assay protocol was qualified prior to use. To this end, the standardized assay was used in series of experiments with more than 20 donors to define the expected background spot production and intra- and inter-assay variation in the hands of defined operators. All experimental steps from handling of starting material through testing and acquisition of data were conducted by the same experienced operator.
Impact of different freezing media on the cell viability and recovery across institutions
Impact of different freezing media on the immunologic function across different protocols
Background spot production and detection rates
(B) w/o serum (commercial)
(C) w/o serum (self-made)
94 of 117
(B) w/o serum (commercial)
108 of 128
(C) w/o serum (self-made)
110 of 125
In addition to the background spot production, detection rates and size of the antigen-specific T-cell response, we were interested to determine whether different freezing media may result in differences in the replicate variation (supplementary table 1), which was calculated as variance of the replicate (raw spot counts) divided by (median of the replicate + 1). The replicate variation found in this proficiency panel was similar for the three freezing media conditions. In summary, our results indicate that background spot production, detection rates, size of detected antigen-specific T-cell responses and replicate variation did not vary between the three tested freezing media.
Impact of different freezing media on the cell viability and recovery within on institution
Impact of different freezing media on the immunological function within one institution
The performance of cellular immune assays is influenced by a series of factors including the starting cell material, the assay procedure, the data analysis, the rules applied for response determination and the laboratory environment in which these assays are conducted. Media used in the process, including freezing, thawing, washing and testing of donor PBMCs are critical components. Indeed, multiple studies in the past have shown that serum-free test media for ELISPOT assays that lead to low background, high detection rates and similar magnitude of antigen-specific T-cell responses as compared to media supplemented with pretested serum batches [14, 15]. The extension of this work to a study focusing on freezing media was a consequent next step toward complete removal of serum components throughout the entire process. The data obtained in the current proficiency panel provide evidence that commercially available serum-free freezing medium as well as a self-made serum-free freezing medium supports high cell viability and recovery after thawing and favorable immunologic function in the ELISPOT assay across a multitude of different and highly heterogenous protocols. Obviously, all commonly available freezing media could not be tested in a single proficiency panel, and the selection of three media used in the proficiency panel was made by the participating centers which lead to the fact that a freezing media containing FCS, which is probably the most common supplement used was not included in the proficiency panel. Experiments performed in preparation of the proficiency panel did not indicate differences between cells that were frozen with media supplemented with FCS and human AB serum. Notably, the cell viability and recovery within the panel was excellent, and the background spot production found in this panel phase was lower than expected from previously organized proficiency panels in which cell material that was frozen with media containing FCS was distributed.
A recent single-center study published shortly after the completion of this proficiency panel showed that serum-free media can lead to a high cell quality and immunologic function . Germann et al. used BSA and BSA plus HES as a serum substitute and applied a FCS-based medium as a comparator. As media supplemented with BSA were not included in our proficiency panel, we expanded the list of different freezing media in a series of experiments in a single-center setting and also test FCS-based freezing solution. In contrast to the group of Germann, we found an increased background spot production using cells frozen with a medium supplemented with BSA only or with HES. This may be attributed to use of different donors, antigens tested or protocol properties for thawing, handling and testing the cells in ELISPOT. Independent of the reason for the discrepant findings in these two specific sets of experiments, it remains important to identify freezing media leading to favorable results across a multitude of different assay protocols and regional differences between patient/donor populations. An additional finding of the second part of this study was that all three media used in the proficiency panel led to similar results as compared to cells frozen with a medium that was supplemented with FCS which is broadly used worldwide.
Another single-center study that systematically tested the impact of different freezing media on cell viability and T-cell function compared four different media additives that consisted of (1) fetal bovine serum, (2) autologous plasma and Dextran-40, (3) human AB serum, or (4) human serum albumin . In contrast to what was found in our study, cells frozen in medium supplemented with human AB serum had a decreased viability compared to cells frozen with media containing any of the other three tested additives. This discrepant result may be explained by the fact that different AB serum batches might indeed have different properties. An additional finding of the study from Disis et al.  was that cells frozen with a medium supplemented by HSA had a high viability after thawing and supported detection of antigen-specific proliferative responses after stimulation with tetanus toxoid and [3H] thymidine incorporation as readout. This study was the first to suggest that HSA might be a recommendable additive for freezing media for immunologic monitoring assays. Maecker et al. used the optimized freezing medium from Disis et al., which was complemented with HSA (6.25 %) in HLA-peptide multimer staining, cytokine flow cytometry and ELISPOT experiments. Maecker et al. showed that (1) this serum-free medium supported a high sensitivity and specificity in standardized assay protocols and (2) results obtained with frozen cells were similar to the results generated using fresh cell material . An additional study from Bull et al.  showed high viability and recovery for freezing media supplemented with HSA and suggested the use of such media for HIV vaccine trials. All these complementary studies support the use of serum-free media that have now been shown by CIP to support favorable cell function across a wide variety of different ELISPOT protocols by our proficiency panel. Additional recommendations for factors that matter when freezing and thawing PBMCs for immunologic assays (e.g., use of warmed medium for initial dilution of cells after thawing) have recently been published as a result of a workshop organized by the Society for Immunotherapy of Cancer and may be considered when optimizing freezing and thawing procedures .
Concerning the general use of serum-free freezing media, the authors acknowledge that so far no experimental data exist showing that PBMCs stored in serum-free freezing media over a long storage period do not change properties. In addition, no data exist so far, which indicates how serum-free media impact on the phenotype or function of lymphocytes in other, including flow-based, T-cell assays and on further immune cell populations (e.g., MSDC, NK cells, DCs). In addition, different batches of human serum albumin might contain different impurities which may impact on viability, phenotype and function of cells. Although the variation between different HSA batches will probably be smaller compared to differences of serum batches, a pretesting of new HSA batches may become needed to control assay performance over time . In conclusion, more functional tests following long-term storage of PBMC in serum-free media, similar designed studies for assays studying other immune cell populations and bridging studies prior to changing HSA batches are mandated.
As shown in Table 1b, the evaluable thirty-one laboratories participating in the proficiency panel had reached high detection rates of detecting antigen-specific T-cell responses against the FLU and EBV peptides at low/moderate or even very low frequencies (all <40 spots per 100,000 PBMCs). Such high detection rates for a heterogeneous group of laboratories were not observed in previous panel phases organized by CIP. The observation of such high detection rates was unexpected as most cells provided were probably not frozen in the medium condition that was used to optimize the assay protocols in the individual participating laboratories. Two factors that might have contributed to this detection rate “above average” are that (1) the five CRI-CIC laboratories that participated in this study were known to be top performers in former proficiency panels and (2) 14 laboratories in this panel already participated in previous ELISPOT proficiency panels of CIP. The scans of the filter plates shown in supplementary figures 1a–c show an expected heterogeneity of spot and filter appearance on one hand and an unexpected high consistency of results generated across institutions on the other hand. Again such a high concordance of results was not found in previous proficiency panels. Although the design of the study does not allow to formally prove that the previous participation in harmonization efforts was indeed the reason for the overall high performance in this study group, the authors cannot exclude that the favorable results observed may be due to an increased level of harmonization among participants.
Altogether, it is concluded that the results generated both in the proficiency panel and in the single-center study provide a firm basis for the recommendation to use serum-free media for freezing of PBMCs collected throughout clinical testing. The use of defined media for freezing and testing of PBMCs may lead to a higher reproducibility of results generated over time and across institutions and less delays when importing cell material in multinational trials.
This study and the CIP proficiency panel program were supported by the Wallace Coulter Foundation (Florida, USA). The organizers thank the CRI-CIC leadership and immune assay working group members for the continuous collaboration regarding the harmonization of immune assays.
Conflict of interest
The authors declare that they have no conflict of interest.
This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
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