Display of both N- and C-terminal target fusion proteins on the Aspergillus oryzae cell surface using a chitin-binding module
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A novel cell surface display system in Aspergillus oryzae was established by using a chitin-binding module (CBM) from Saccharomyces cerevisiae as an anchor protein. CBM was fused to the N or C terminus of green fluorescent protein (GFP) and the fusion proteins (GFP-CBM and CBM-GFP) were expressed using A. oryzae as a host. Western blotting and fluorescence microscopy analysis showed that both GFP-CBM and CBM-GFP were successfully expressed on the cell surface. In addition, cell surface display of triacylglycerol lipase from A. oryzae (tglA), while retaining its activity, was also successfully demonstrated using CBM as an anchor protein. The activity of tglA was significantly higher when tglA was fused to the C terminus than N terminus of CBM. Together, these results show that CBM used as a first anchor protein enables the fusion of both the N and/or C terminus of a target protein.
KeywordsCell surface display Aspergillus oryzae Chitin-binding module Triacylglycerol lipase
The development of cell surface display systems of heterologous proteins or peptides has recently become an active research area (Boder and Wittrup 1997; Stahl and Uhlen 1997; Kondo and Ueda 2004). By utilizing naturally occurring surface proteins as scaffolds, functional proteins can be displayed on various cell surfaces (Hansson et al. 2001). In these systems, cells displaying functional proteins can be easily separated and have been used in a wide variety of biotechnological applications, such as bioconversion (Tateno et al. 2007; Kotaka et al. 2008), bioremediation of heavy metals (Kambe-Honjoh et al. 2000), oral vaccine development (Raha et al. 2005; Ramasamy et al. 2006), and combinatorial library screening (Georgiou et al. 1997). Cell surface display systems require anchor proteins as a scaffold to maintain fused proteins with a high degree of stability within the cell wall. So far, several cell surface display systems using various anchor proteins have been reported in Gram-negative/positive bacteria, yeasts, and so on (Murai et al. 1997; Lee et al. 2003; Tanino et al. 2004).
Aspergillus oryzae has been commonly used in the manufacture of traditional Japanese fermented food products, such as sake, miso (paste made from soybeans), and soy sauce, and has been guaranteed to be generally recognized as safe (GRAS). Recently, the molecular biology of Aspergillus species has been studied extensively, including determination of both the entire genome sequence and the expressed sequence tags (Machida et al. 2005; Akao et al. 2007). Furthermore, recombinant A. oryzae strains have been developed for the production of heterogeneous and endogenous proteins, because this microorganism secretes large amounts of protein (Christensen et al. 1988; Iwashita 2002; Kitamoto 2002). However, to our knowledge, cell surface display systems in A. oryzae have only been developed using a glycosylphosphatidylinositol anchor protein (Adachi et al. 2008). Therefore, to expand the A. oryzae cell surface display system, the development of other anchor proteins for display on A. oryzae is needed.
The site of the displayed protein and anchor protein fusion (i.e., N or C terminus) is one of the important factors in determining whether the target proteins are displayed without loss of function. In yeast and lactic acid bacteria cell surface display systems, it has been demonstrated that the activity of displayed proteins depends on the fusion site (N or C terminus) of the anchor proteins (Shigechi et al. 2004; Okano et al. 2008). α-Amylase from Streptococcus bovis 148 (Satoh et al. 1993) and lipase from Rhizopus oryzae show high activity when fused to the C terminus of the anchor protein, but poor activity when fused to the N terminus (Shigechi et al. 2004; Washida et al. 2001). For A. oryzae, there is currently no anchor protein that allows fusion of a target protein to either the N or C terminus.
In this study, to expand the utility of A. oryzae, we established a novel cell surface display system that enables the target protein to fuse to both N and C termini of the anchor protein. We focused on the chitin-binding module (CBM) from Saccharomyces cerevisiae, which has high affinity to chitin (Kuranda and Robbins 1991). A. oryzae has a large amount of chitin on its cell surface (Seidl 2008; Higuchi et al. 2009), and therefore CBM should be suitable as an anchor protein which tightly binds to the A. oryzae cell wall. Using CBM as an anchor protein, we tested the displaying possibilities of green fluorescent protein (GFP) and triacylglycerol lipase from A. oryzae (tglA).
Materials and methods
Strains and media
Escherichia coli NovaBlue (Novagen, Inc., Madison, WI) was used as the cloning host for recombinant DNA manipulations. The bacterium was grown in Luria–Bertani medium (1% tryptone, 0.5% yeast extract, and 0.5% NaCl) containing 0.1 mg/ml of ampicillin. The A. oryzae niaD mutant (strain IF4), derived from wild-type A. oryzae OSI1031, was used as the expression host for the novel cell surface display system. Czapek–Dox (CD) medium plates (2% glucose, 0.3% NaNO3 (CD-NO3), 0.2% KCl, 0.1% KH2PO4, 0.05% MgSO4·7H2O, and 0.8 M NaCl, pH 6.0) containing 1.5% agar were used as the minimal medium. The plate was used to select the fungal transformants. GPY medium (3% glucose, 0.2% KCl, 0.1% KH2PO4, 0.05% MgSO4·7H2O, 1% peptone, and 0.5% yeast extract, pH 6.0) was used for growing the A. oryzae IF4 and transformants. All transformants and wild-type A. oryzae used for all analyses in this study were cultivated in Sakaguchi flasks (500 ml) containing 100 ml of GPY medium.
Construction of expression vectors and A. oryzae transformation
A. oryzae transformation vectors were constructed using the pISI vector (Research Institute, Gekkeikan Sake Co., Kyoto, Japan), which contains the sodM promoter and glaB terminator from A. oryzae (Ishida et al. 2004). Polymerase chain reaction (PCR) amplification of DNA fragments was performed using KOD plus DNA polymerase (Toyobo, Osaka, Japan) according to the manufacturer's protocol.
The pISI-GFP vector (Adachi et al. 2008) containing the tglA signal sequence from A. oryzae (Toida et al. 2000), the N28 sequence from R. oryzae (Hama et al. 2006; Hama et al. 2008), and the EGFP gene PCR amplified from pEGFP (Clontech Laboratory, Mountain View, CA) was used as the GFP secreting vector. The GFP anchoring expression vectors were constructed as follows. The DNA fragment encoding CBM was amplified by PCR using the genome from the S. cerevisiae W303-IB strain using the following primers, 5′-GCTAATGGAGCGGCCGCATCAGACAGTACAGCTCGTACATTGGCTAAAGA-3′ and 5′-CCATAGGATATTTAAATCTAAAAGTAATTGCTTTCCAAATAAGAGAAATT-3′ (underlined sequences indicate restriction enzyme sites). The amplified fragment was digested with NotI and SwaI, and inserted into pISI-GFP-MP1 (Adachi et al. 2008). The resultant plasmid was designated as pISI-GFP-CBM. The DNA fragment encoding the last 15 bases of the N28 sequence, CBM, and the last 15 bases of GFP was amplified from the genome of the S. cerevisiae W303-IB strain with the following primers, 5′-AACAGCGCCAAGCGTTGGCCATCAGACAGTACAGCTCGTAC-3′ and 5′-GCCCTTGCTCACCATCATATGAAAGTAATTGCTTTCCAAAT-3′. The amplified fragment was inserted into SalI-digested linear pISI-GFP using the In-Fusion enzyme (Takara Bio, Otsu, Japan) according to the manufacturer’s procedure. The resultant plasmid was designated as pISI-CBM-GFP.
Transformation of A. oryzae was carried out according to the method described by Gomi et al (1987). The resultant transformants were subcultured on CD-NO3 medium plates three times to obtain stable expression transformants. The transformants were named A. oryzae/GFP, A. oryzae/GFP-CBM, A. oryzae/CBM-GFP, A. oryzae/tglA, A. oryzae/tglA-CBM, and A. oryzae/CBM-tglA. According to our previous study, the copy number of the expression vectors integrated into the genome was assumed to be one (Ishida et al. 2000).
Fluorescence microscopy analysis
Wild-type A. oryzae and transformants harvested from submerged cultures cultivated for 7 days were washed twice with PBS. GFP fluorescence was detected using a fluorescence microscope (BZ-8000; Keyence Co., Osaka, Japan).
Recombinant A. oryzae harvested from submerged cultures cultivated for 10 days were washed with PBS three times, and the surface-displayed protein was cleaved by incubating the suspension with Proteinase K (final concentration, 30 U/L) for 24 h at 37°C. After proteolysis, A. oryzae was washed twice with PBS, followed by gentle centrifugation to remove the protease, and GFP fluorescence was observed using fluorescence microscopy as described above.
Western blot analysis
Cell wall proteins were extracted from wild-type A. oryzae and transformants. Briefly, the washed frozen cells were ground with a pestle and mortar, and then resuspended in PBS (15 ∼ 20 μl/mg dry cell). The cytosolic fraction was separated from cell walls and membranes by centrifugation at 15,000 rpm at 4°C for 10 min. Then the resultant precipitate was washed twice with PBS and subjected to the following analysis as a cell wall fraction.
Sodium dodecyl sulfate polyacrylamide gel electrophoresis analysis was performed using a 12.5% gel. The separated proteins were transferred from the gel to a polyvinylidene difluoride (PVDF) membrane (Atto, Tokyo, Japan) using a HorizBlot AE-6677 (Atto), according to the supplier's instruction. The PVDF membrane was blocked with 5% non-fat milk and incubated with primary mouse anti-GFP IgG (Sigma, St. Louis, MO) or mouse anti-FLAG IgG (Sigma) for 1 h at room temperature. The PVDF membrane was subsequently incubated with a secondary alkaline phosphatase-conjugated mouse anti-mouse IgG antibody (Promega, Madison, WI) and washed twice with TBS-T buffer. For detecting GFP, the PVDF membrane was incubated with a mixture of nitroblue tetrazolium chloride and 5-bromo-4-chloro-3-indolyl phosphate toluidine salt (Promega), according to the manufacturer’s procedure. For detecting tglA, the PVDF membrane was incubated with CDP-star (Applied Biosystems), according to the manufacturer's procedure.
Measurement of lipase activity
Wild-type A. oryzae and each of the transformants were cultivated in GPY medium and harvested by filtration with Miracloth (Calbiochem, Darmstadt, Germany). Cells were washed with distilled water and lyophilized. Lyophilized cells were crushed with an SK-Mill (Funakoshi, Tokyo, Japan). Culture supernatants and crushed cells were used for the assay of lipase activity using Lipase Kit S (DS Pharma Biomedical, Osaka, Japan) according to the supplier's protocol, and the resulting values were expressed in international units (IU). One unit of lipase activity was defined as the amount of enzyme catalyzing the formation of 1 mmol of 2,3-dimercaptopropan-1-ol from 2,3-dimercaptopropan-1-ol tributyl ester per min. Triplicate experiments were performed.
Localization of GFP-CBM and CBM-GFP fusion proteins evaluated by western blotting
Localization of GFP-CBM and CBM-GFP fusion proteins visualized by fluorescence microscopy
To evaluate the accessibility of cell surface displaying GFP, protease treatment was carried out. After proteinase K treatment, green fluorescence on the cell surface of A. oryzae/GFP-CBM and A. oryzae/CBM-GFP transformants was diminished (Fig. 3c, f), whereas the A. oryzae/GFP transformant was scarcely different before and after treatment (Fig. 3h, i). We assumed that we could visualize the produced GFP fused with anchor proteins that were successfully localized on the cell surface.
Evaluation of triacylglycerol lipase-displaying A. oryzae
In this study, to expand the utility of the cell surface display system of A. oryzae, we successfully developed a novel cell surface display system using CBM as the anchor protein. CBM has two putative advantages. One is its small size (about 9 kDa) compared to the previously reported anchor protein MP1 (about 25 kDa; Adachi et al. 2008) which may reduce the steric hindrance between anchor protein and target protein, and the other is that a target protein can be fused to either its N or C terminus.
Western blot analysis revealed that both GFP-CBM and CBM-GFP fusion proteins were located in the cell wall fraction (Fig. 2). GFP fluorescence was also clearly detected ubiquitously on the cell surface of A. oryzae (Fig. 3a, b, d, e). To our knowledge, CBM is the first anchor protein whose N or C terminus can be fused with a target protein that can be expressed on the cell surface of A. oryzae while retaining its activity. The expression level of GFP-CBM is higher compared with that of GFP-MP1 (Adachi et al. 2008), showing one of the advantages of CBM as an anchor protein. The expression level of GFP-CBM is higher compared to that of CBM-GFP, suggesting the importance of the fusion site for the production levels of the fusion protein. In all transformants, the GFP fluorescence localization at the both hyphal tips and septa was caused by the signal sequence, which is consistent with a previous report (Maruyama and Kitamoto 2007). Additionally, the decrease in cell surface fluorescence after proteinase K treatment clearly shows that GFP is accessible enough for the protease (Fig. 3c, f), which suggests that both GFP-CBM and CBM-GFP were oriented outside the cell wall.
Using CBM as an anchor protein, the lipase tglA was displayed on the cell surface of A. oryzae. Both tglA-CBM and CBM-tglA fusion proteins were also successfully located on the cell wall (Fig. 4). Because tglA activity was detected only in the fungus body, this demonstrates that CBM can immobilize a fused protein tightly on the cell surface in the same manner as the glycosylphosphatidylinositol anchor protein MP1 (Adachi et al. 2008). However, the lipase activity on the fungus body expressing tglA-CBM was lower compared to that expressing CBM-tglA. One possible explanation is that the activity of tglA-CBM may be inhibited because the location of the catalytic triad of tglA is on the C-terminal side (Toida et al. 2000). Although introduction of some linker region between target protein and anchor protein may increase the activity of target protein, it is time-consumable and troublesome. These results also suggest that the site of the displayed protein and anchor protein fusion is important for protein display without the loss of function, and that CBM is an appropriate anchor protein due to the availability of both its N and C termini.
In conclusion, we developed a novel cell surface display system for A. oryzae using CBM as an anchoring motif. This system is convenient for genetic manipulation because CBM has a small molecular weight and target proteins can be fused to either its N or C terminus. Furthermore, it should be possible to catalyze sequential reactions by combining this CBM-based system with cell surface display using MP1 or other anchor proteins.
This work was supported by the 2005 Regional Innovative Consortium Project of the Ministry of Economy, Trade and Industry, Japan, and Bio-oriented Technology Research Advancement Institution, Japan, and partially supported by Special Coordination Funds for Promoting Science and Technology, Creation of Innovation Centers for Advanced Interdisciplinary Research Areas (Innovative Bioproduction, Kobe), MEXT, Japan.
This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
- Akao T, Sano M, Yamada O, Akeno T, Fujii K, Goto K, Ohashi-Kunihiro S, Takase K, Yasukawa-Watanabe M, Yamaguchi K, Kurihara Y, Maruyama J, Juvvadi PR, Tanaka A, Hata Y, Koyama Y, Yamaguchi S, Kitamoto N, Gomi K, Abe K, Takeuchi M, Kobayashi T, Horiuchi H, Kitamoto K, Kashiwagi Y, Machida M, Akita O (2007) Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions. DNA Res 14:47–57CrossRefGoogle Scholar
- Gomi K, Iimura Y, Hara S (1987) Integrative transformation of Aspergillus oryzae with a plasmid containing the Aspergillus nidulans argB gene. Agric Biol Chem 51:2549–2555Google Scholar
- Hansson M, Samuelson P, Gunneriusson E, Stahl S (2001) Surface display on gram positive bacteria. Comb Chem High Throughput Screen 4:171–184Google Scholar
- Iwashita K (2002) Recent studies of protein secretion by filamentous fungi. J Biosci Bioeng 94:530–535Google Scholar
- Kuranda MJ, Robbins PW (1991) Chitinase is required for cell separation during growth of Saccharomyces cerevisiae. J Biol Chem 266:19758–19767Google Scholar
- Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K-I, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H (2005) Genome sequencing and analysis of Aspergillus oryzae. Nature 438:1157–1161CrossRefGoogle Scholar
- Murai T, Ueda M, Yamamura M, Atomi H, Shibasaki Y, Kamasawa N, Osumi M, Amachi T, Tanaka A (1997) Construction of a starch-utilizing yeast by cell surface engineering. Appl Environ Microbiol 63:1362–1366Google Scholar
- Okano K, Zhang Q, Kimura S, Narita J, Tanaka T, Fukuda H, Kondo A (2008) System using tandem repeats of the cA peptidoglycan-binding domain from Lactococcus lactis for display of both N- and C-terminal fusions on cell surfaces of lactic acid bacteria. Appl Environ Microbiol 74:1117–1123CrossRefGoogle Scholar
- Satoh E, Niimura Y, Uchimura T, Kozaki M, Komagata K (1993) Molecular cloning and expression of two α-amylase genes from Streptococcus bovis 148 in Escherichia coli. Appl Environ Microbiol 59:3669–3673Google Scholar
- Shigechi H, Koh J, Fujita Y, Matsumoto T, Bito Y, Ueda M, Satoh E, Fukuda H, Kondo A (2004) Direct production of ethanol from raw corn starch via fermentation by use of a novel surface-engineered yeast strain codisplaying glucoamylase and α-amylase. Appl Environ Microbiol 70:5037–5040CrossRefGoogle Scholar