European Biophysics Journal

, Volume 45, Issue 8, pp 807–814 | Cite as

Structure of the C-terminal domain of the prokaryotic sodium channel orthologue NsvBa

Original Article

Abstract

Crystallographic and electrophysiological studies have recently provided insight into the structure, function, and drug binding of prokaryotic sodium channels. These channels exhibit significant sequence identities, especially in their transmembrane regions, with human voltage-gated sodium channels. However, rather than being single polypeptides with four homologous domains, they are tetramers of single domain polypeptides, with a C-terminal domain (CTD) composed of an inter-subunit four helix coiled coil. The structures of the CTDs differ between orthologues. In NavBh and NavMs, the C-termini form a disordered region adjacent to the final transmembrane helix, followed by a coiled-coil region, as demonstrated by synchrotron radiation circular dichroism (SRCD) and double electron–electron resonance electron paramagnetic resonance spectroscopic measurements. In contrast, in the crystal structure of the NavAe orthologue, the entire C-terminus is comprised of a helical region followed by a coiled coil. In this study, we have examined the CTD of the NsvBa from Bacillus alcalophilus, which unlike other orthologues is predicted by different methods to have different types of structures: either a disordered region adjacent to the transmembrane region, followed by a helical coiled coil, or a fully helical CTD. To discriminate between the two possible structures, we have used SRCD spectroscopy to experimentally determine the secondary structure of the C-terminus of this orthologue and used the results as the basis for modeling the open and closed conformations of the channel.

Keywords

Voltage-gated sodium channels Synchrotron radiation circular dichroism spectroscopy Structure prediction Bioinformatics Coiled coil 

Notes

Acknowledgments

This work was supported by grants from the UK Biotechnology and Biological Science Research Council (BBSRC) (to BAW). It was enabled by beamtime grants from the ISA (Denmark), ANKA (Germany), and Soleil (France) synchrotrons [to BAW].

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Copyright information

© European Biophysical Societies' Association 2016

Authors and Affiliations

  1. 1.Institute of Structural and Molecular Biology, Birkbeck CollegeUniversity of LondonLondonUK
  2. 2.School of Biological SciencesUniversity of KentCanterburyUK

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