Microbial Ecology

, Volume 70, Issue 2, pp 390–399 | Cite as

Resource Type and Availability Regulate Fungal Communities Along Arable Soil Profiles

  • Julia Moll
  • Kezia Goldmann
  • Susanne Kramer
  • Stefan Hempel
  • Ellen Kandeler
  • Sven Marhan
  • Liliane Ruess
  • Dirk Krüger
  • Francois Buscot
Environmental Microbiology


Soil fungi play an essential role in the decomposition of plant-derived organic material entering soils. The quality and quantity of organic compounds vary seasonally as well as with soil depth. To elucidate how these resources affect fungal communities in an arable soil, a field experiment was set up with two plant species, maize and wheat. Resource availability was experimentally manipulated by maize litter input on one half of these maize and wheat plots after harvest in autumn. Fungal biomass was determined by ergosterol quantification, and community structure was investigated by fungal automated ribosomal intergenic spacer analysis (F-ARISA). An annual cycle was assessed across a depth gradient, distinguishing three soil habitats: the plough layer, rooted soil below the plough layer, and deeper root-free soil. Fungal communities appeared highly dynamic and varied according to soil depth and plant resources. In the plough layer, the availability of litter played a dominant role in shaping fungal communities, whereas in the rooted layer below, community structure and biomass mainly differed between plant species. This plant effect was also extended into the root-free soil at a depth of 70 cm. In winter, the availability of litter also affected fungal communities in deeper soil layers, suggesting vertical transport processes under fallow conditions. These distinct resource effects indicate diverse ecological niches along the soil profile, comprising specific fungal metacommunities. The recorded responses to both living plants and litter point to a central role of fungi in connecting primary production and decomposition within the plant-soil system.


Plant resources Litter Fungal community structure Fungal biomass Soil depth Arable soil Season ARISA 



We thank Olaf Butenschoen for management at the field site and the many field work helpers. Björn Hoppe is gratefully acknowledged for providing his expertise on F-ARISA analysis and Renate Rudloff for her technical assistance during laboratory work. This study was performed within the framework of the Research Unit “Carbon flow in belowground food webs assessed by isotope tracers” of the DFG (FOR 918) and was also supported by Helmholtz Impulse and Networking Fund through Helmholtz Interdisciplinary Graduate School for Environmental Research (HIGRADE) [67].

Supplementary material

248_2015_569_MOESM1_ESM.pdf (207 kb)
ESM 1 (PDF 206 kb)


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Copyright information

© Springer Science+Business Media New York 2015

Authors and Affiliations

  • Julia Moll
    • 1
    • 2
  • Kezia Goldmann
    • 1
    • 2
  • Susanne Kramer
    • 3
  • Stefan Hempel
    • 4
    • 5
  • Ellen Kandeler
    • 3
  • Sven Marhan
    • 3
  • Liliane Ruess
    • 6
  • Dirk Krüger
    • 1
  • Francois Buscot
    • 1
    • 2
    • 7
  1. 1.Department of Soil EcologyUFZ – Helmholtz Centre for Environmental ResearchHalleGermany
  2. 2.Institute of BiologyUniversity of LeipzigLeipzigGermany
  3. 3.Institute of Soil Science and Land Evaluation, Soil Biology SectionUniversity of HohenheimStuttgartGermany
  4. 4.Institute of Biology, Dahlem Center of Plant SciencesFreie Universität BerlinBerlinGermany
  5. 5.Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB)BerlinGermany
  6. 6.Institute of Biology, Ecology GroupHumboldt-Universität zu BerlinBerlinGermany
  7. 7.German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-LeipzigLeipzigGermany

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