Microbial Ecology

, Volume 61, Issue 3, pp 507–517

Fungal Community Analysis in the Deep-Sea Sediments of the Central Indian Basin by Culture-Independent Approach

  • Purnima Singh
  • Chandralata Raghukumar
  • Pankaj Verma
  • Yogesh Shouche
Environmental Microbiology

Abstract

Few studies have addressed the occurrence of fungi in deep-sea sediments, characterized by elevated hydrostatic pressure, low temperature, and fluctuating nutrient conditions. We evaluated the diversity of fungi at three locations of the Central Indian Basin (CIB) at a depth of ~5,000 m using culture-independent approach. Community DNA isolated from these sediments was amplified using universal and fungal-specific internal transcribed spacers and universal 18S rDNA primer pairs. A total of 39 fungal operational taxonomic units, with 32 distinct fungal taxa were recovered from 768 clones generated from 16 environmental clone libraries. The application of multiple primers enabled the recovery of eight sequences that appeared to be new. The majority of the recovered sequences belonged to diverse phylotypes of Ascomycota and Basidiomycota. Our results suggested the existence of cosmopolitan marine fungi in the sediments of CIB. This study further demonstrated that diversity of fungi varied spatially in the CIB. Individual primer set appeared to amplify different fungal taxa occasionally. This is the first report on culture-independent diversity of fungi from the Indian Ocean.

Copyright information

© Springer Science+Business Media, LLC 2010

Authors and Affiliations

  • Purnima Singh
    • 1
  • Chandralata Raghukumar
    • 1
  • Pankaj Verma
    • 2
  • Yogesh Shouche
    • 2
  1. 1.National Institute of OceanographyCouncil for Scientific and Industrial ResearchDona PaulaIndia
  2. 2.National Centre for Cell Sciences, Lab-IIIPune University CampusPuneIndia

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