Journal of Molecular Evolution

, Volume 68, Issue 6, pp 706–714 | Cite as

An Unusual Recent Expansion of the C-Terminal Domain of RNA Polymerase II in Primate Malaria Parasites Features a Motif Otherwise Found Only in Mammalian Polymerases

  • Sandeep P. Kishore
  • Susan L. Perkins
  • Thomas J. Templeton
  • Kirk W. DeitschEmail author


The tail of the enzyme RNA polymerase II is responsible for integrating the diverse events of gene expression in eukaryotes and is indispensable for life in yeast, fruit flies, and mice. The tail features a C-terminal domain (CTD), which is comprised of tandemly repeated Y1-S2-P3-T4-S5-P6-S7 amino acid heptads that are highly conserved across evolutionary lineages, with all mammalian polymerases featuring 52 identical heptad repeats. However, the composition and function of protozoan CTDs remain less well understood. We find that malaria parasites (genus Plasmodium) display an unprecedented plasticity within the length and composition of their CTDs. The CTD in malaria parasites which infect human and nonhuman primates has expanded compared to closely related species that infect rodents or birds. In addition, this variability extends to different isolates within a single species, such as isolates of the human malaria parasite, Plasmodium falciparum. Our results indicate that expanded CTD heptads in malaria parasites correlates with parasitism of primates and provide the first demonstration of polymorphism of the RNA polymerase II CTD within a single species. The expanded set of CTD heptads feature lysine in the seventh position (Y1-S2-P3-T4-S5-P6-K7), a sequence only seen otherwise in the distal portion of mammalian polymerases. These observations raise new questions for the radiation of malaria parasites into diverse hosts and for the molecular evolution of RNA polymerase II.


Protozoa Plasmodium Apicomplexa Transcription 



Carboxy-terminal domain or C-terminal domain



This work was supported by Grant AI 52390 from the National Institutes of Health to K. W. D. and Medical Scientist Training Program Grant GM07739 and the Paul and Daisy Soros Fellowship to S. P. K. We thank John Stiller for his critical reading of the manuscript. We thank the Malaria Research and Reference Reagent Resource Center (MR4), Dr. X. Su of the NIAID for P. falciparum isolate gDNAs, and Mr. Bryan Falk of the American Museum of Natural History for extracting the P. yoelii, P. berghei, and P. vinckei species and subspecies gDNAs.


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Copyright information

© Springer Science+Business Media, LLC 2009

Authors and Affiliations

  • Sandeep P. Kishore
    • 1
  • Susan L. Perkins
    • 2
  • Thomas J. Templeton
    • 1
  • Kirk W. Deitsch
    • 1
    Email author
  1. 1.Department of Microbiology and ImmunologyWeill Cornell Medical CollegeNew YorkUSA
  2. 2.Sackler Institute for Comparative GenomicsAmerican Museum of Natural HistoryNew YorkUSA

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