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A Neutral Origin for Error Minimization in the Genetic Code

  • Steven E. MasseyEmail author
Article

Abstract

The genetic code has the remarkable property of error minimization, whereby the arrangement of amino acids to codons is highly efficient at reducing the deleterious effects of random point mutations and transcriptional and translational errors. Whether this property has been explicitly selected for is unclear. Here, three scenarios of genetic code evolution are examined, and their effects on error minimization assessed. First, a simple model of random stepwise addition of physicochemically similar amino acids to the code is demonstrated to result in substantial error minimization. Second, a model of random addition of physicochemically similar amino acids in a codon expansion scheme derived from the Ambiguity Reduction Model results in improved error minimization over the first model. Finally, a recently introduced 213 Model of genetic code evolution is examined by the random addition of physicochemically similar amino acids to a primordial core of four amino acids. Under certain conditions, 22% of the resulting codes produced according to the latter model possess equivalent or superior error minimization to the standard genetic code. These analyses demonstrate that a substantial proportion of error minimization is likely to have arisen neutrally, simply as a consequence of code expansion, facilitated by duplication of the genes encoding adaptor molecules and charging enzymes. This implies that selection is at best only partly responsible for the property of error minimization. These results caution against assuming that selection is responsible for every beneficial trait observed in living organisms.

Keywords

Genetic code Error minimization Neutral 

Notes

Acknowledgments

The author would like to thank three anonymous referees of an early version of the manuscript, and two subsequent reviewers, for their valuable and constructive comments. I would also like to thank Dr. B. R. Francis (University of Wyoming) for his critique.

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Copyright information

© Springer Science+Business Media, LLC 2008

Authors and Affiliations

  1. 1.Department of Molecular Biology, College of AgricultureUniversity of WyomingLaramieUSA
  2. 2.Department of BiologyUniversity of Puerto RicoSan JuanUSA

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