Analytical and Bioanalytical Chemistry

, Volume 408, Issue 22, pp 6133–6140

GC-MS/MS survey of collision-induced dissociation of tert-butyldimethylsilyl-derivatized amino acids and its application to 13C-metabolic flux analysis of Escherichia coli central metabolism

  • Nobuyuki Okahashi
  • Shuichi Kawana
  • Junko Iida
  • Hiroshi Shimizu
  • Fumio Matsuda
Research Paper

DOI: 10.1007/s00216-016-9724-4

Cite this article as:
Okahashi, N., Kawana, S., Iida, J. et al. Anal Bioanal Chem (2016) 408: 6133. doi:10.1007/s00216-016-9724-4

Abstract

Stable isotope labeling experiments using mass spectrometry have been employed to investigate carbon flow levels (metabolic flux) in mammalian, plant, and microbial cells. To achieve a more precise 13C-metabolic flux analysis (13C-MFA), novel fragmentations of tert-butyldimethylsilyl (TBDMS)-amino acids were investigated by gas chromatography-tandem mass spectrometry (GC-MS/MS). The product ion scan analyses of 15 TBDMS-amino acids revealed 24 novel fragment ions. The amino acid-derived carbons included in the five fragment ions were identified by the analyses of 13C-labeled authentic standards. The identification of the fragment ion at m/z 170 indicated that the isotopic abundance of S-methyl carbon in methionine could be determined from the cleavage of C5 in the precursor of [M–159]+ (m/z 218). It was also confirmed that the precision of 13C-MFA in Escherichia coli central carbon metabolism could be improved by introducing 13C-labeling data derived from novel fragmentations.

Graphical Abstract

Novel collision-induced dissociation fragmentations of tert-butyldimethylsilyl amino acids were investigated and identified by GC-MS/MS

Keywords

13C-metabolic flux analysis GC-MS/MS Fragmentation Amino acids Escherichia coli 

Abbreviations

3PG

3-Phosphoglycerate

6PG

6-Phosphogluconate

AcCoA

Acetyl-coenzyme A

Ala

Alanine

Asp

Aspartate

Cit

Citrate

DHAP

Dihydroxyacetone phosphate

E4P

Erythrose 4-phosphate

F6P

Fructose 6-phosphate

FBP

Fructose 1,6-bisphosphate

Fum

Fumarate

G6P

Glucose 6-phosphate

GAP

Glyceraldehyde 3-phosphate

Glu

Glutamate

Gly

Glycine

His

Histidine

Ile

Isoleucine

Leu

Leucine

Lys

Lysine

Mal

Malate

Met

Methionine

Oxa

Oxaloacetate

PEP

Phosphoenolpyruvate

Phe

Phenylalanine

Pro

Proline

Pyr

Pyruvate

R5P

Ribose 5-phosphate

Ru5P

Ribulose 5-phosphate

S7P

Sedoheptulose 7-phosphate

Ser

Serine

Suc

Succinate

Thr

Threonine

Tyr

Tyrosine

Val

Valine

Xu5P

Xylulose 5-phosphate

αKG

α-Ketoglutarate

Supplementary material

216_2016_9724_MOESM1_ESM.pdf (331 kb)
ESM 1(PDF 331 kb)
216_2016_9724_MOESM2_ESM.xlsx (71 kb)
ESM 2(XLSX 71 kb)

Funding information

Funder NameGrant NumberFunding Note
Japan Science and Technology Agency
  • Strategic International Collaborative Research Pro

Copyright information

© Springer-Verlag Berlin Heidelberg 2016

Authors and Affiliations

  • Nobuyuki Okahashi
    • 1
  • Shuichi Kawana
    • 2
  • Junko Iida
    • 2
    • 3
  • Hiroshi Shimizu
    • 1
  • Fumio Matsuda
    • 1
  1. 1.Department of Bioinformatic Engineering, Graduate School of Information Science and TechnologyOsaka UniversitySuitaJapan
  2. 2.Analytical and Measuring Instruments DivisionShimadzu CorporationKyotoJapan
  3. 3.Osaka University Shimadzu Analytical Innovation Research Laboratory, Graduate School of EngineeringOsaka UniversitySuitaJapan

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