Abnormal islet sphingolipid metabolism in type 1 diabetes
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Sphingolipids play important roles in beta cell physiology, by regulating proinsulin folding and insulin secretion and in controlling apoptosis, as studied in animal models and cell cultures. Here we investigate whether sphingolipid metabolism may contribute to the pathogenesis of human type 1 diabetes and whether increasing the levels of the sphingolipid sulfatide would prevent models of diabetes in NOD mice.
We examined the amount and distribution of sulfatide in human pancreatic islets by immunohistochemistry, immunofluorescence and electron microscopy. Transcriptional analysis was used to evaluate expression of sphingolipid-related genes in isolated human islets. Genome-wide association studies (GWAS) and a T cell proliferation assay were used to identify type 1 diabetes related polymorphisms and test how these affect cellular islet autoimmunity. Finally, we treated NOD mice with fenofibrate, a known activator of sulfatide biosynthesis, to evaluate the effect on experimental autoimmune diabetes development.
We found reduced amounts of sulfatide, 23% of the levels in control participants, in pancreatic islets of individuals with newly diagnosed type 1 diabetes, which were associated with reduced expression of enzymes involved in sphingolipid metabolism. Next, we discovered eight gene polymorphisms (ORMDL3, SPHK2, B4GALNT1, SLC1A5, GALC, PPARD, PPARG and B4GALT1) involved in sphingolipid metabolism that contribute to the genetic predisposition to type 1 diabetes. These gene polymorphisms correlated with the degree of cellular islet autoimmunity in a cohort of individuals with type 1 diabetes. Finally, using fenofibrate, which activates sulfatide biosynthesis, we completely prevented diabetes in NOD mice and even reversed the disease in half of otherwise diabetic animals.
These results indicate that islet sphingolipid metabolism is abnormal in type 1 diabetes and suggest that modulation may represent a novel therapeutic approach.
The RNA expression data is available online at https://www.dropbox.com/s/93mk5tzl5fdyo6b/Abnormal%20islet%20sphingolipid%20metabolism%20in%20type%201%20diabetes%2C%20RNA%20expression.xlsx?dl=0. A list of SNPs identified is available at https://www.dropbox.com/s/yfojma9xanpp2ju/Abnormal%20islet%20sphingolipid%20metabolism%20in%20type%201%20diabetes%20SNP.xlsx?dl=0.
KeywordsFenofibrate Gene polymorphisms GWAS Islet autoimmunity NOD mice Prevention Sphingolipid Sulfatide T cells Type 1 diabetes
Counts per min
Diabetes virus detection
Expression quantitative trait loci
Genetic risk score
Insulin-defective ribosomal product
Peripheral blood mononuclear cell
Type 1 diabetes is characterised as an autoimmune disease in which autoreactive T cells infiltrate the pancreatic islets and destroy the insulin producing beta cells . However, the potential importance of beta cell dysfunction, rather than complete beta cell loss, in the pathogenesis of type 1 diabetes has recently been emphasised by the demonstration that a majority of individuals with diabetes retain a significant proportion of insulin-positive islets at disease onset [2, 3, 4]. In support of this, islets isolated from pancreatic biopsies taken from individuals with type 1 diabetes partly regained their ability to secrete insulin in response to glucose when cultured in a non-diabetogenic environment in vitro , while the majority of individuals with type 1 diabetes regained insulin production immediately upon treatment with autologous system cell therapy . Potential key players in this beta cell dysfunction are sphingolipids, a diverse group of lipids found in all cellular membranes, having diverse roles as both structural components and signalling molecules [7, 8, 9]. Sphingolipids are known to have important roles in beta cell biology [10, 11] and have been linked to the development of diabetes-associated pathologies . One especially important sphingolipid is sulfatide (3-O-sulfogalactosylceramide) which acts as an insulin chaperone, preserves insulin crystals and regulates insulin secretion by influencing the gating of ATP-sensitive potassium channels [13, 14]. However, most studies regarding the role of sphingolipid metabolism in beta cells have been conducted in animal models and cell cultures. Here, we tested the hypothesis that sphingolipid metabolism is contributing to the pathogenesis of human type 1 diabetes from several perspectives. Using blood and tissue samples from pancreas biopsies from newly diagnosed individuals with type 1 diabetes, we found evidence suggesting that sphingolipid metabolism plays a role in type 1 diabetes pathology. Based on this we tested whether increasing pancreatic sulfatide levels could prevent and reverse experimental autoimmune diabetes in NOD mice.
Pancreatic tissue was collected in the Diabetes Virus Detection (DiViD) studies as described previously . In short, individuals with diabetes between 25 and 35 years of age had a surgical minimal pancreatic tail resection obtained by laparoscopy 3 to 9 weeks after the onset of type 1 diabetes. The DiViD study was approved by The Norwegian Government’s Regional Ethics Committee (reference 2009/1907). UK tissue samples from the Exeter Archival Diabetes Biobank had all been collected prior to the study and were made available with ethical approval from the West of Scotland Research Ethics Service (reference 15/WS/0258). The tissue from donors with type 2 diabetes and non-diabetic control donors, used for RNA analyses, was acquired from the network of Pancreatic Organ Donors (nPOD; with approval by the University of Tennessee Health Science Center (UTHSC) local Institutional Review Board [reference 10-00848-XM]). The pancreatic tissue from participants without diabetes used for sulfatide staining was acquired from Rigshospitalet, Copenhagen, Denmark, as completely anonymised (unknown age and sex) healthy tissue removed from pancreas samples after resection for surgical treatment of pancreatic cancer and was used in accordance with the rules by Region Hovedstaden Committee on Health Research Ethics. Human islets for electron microscopy were obtained as described previously . Peripheral blood samples were collected from individuals with type 1 diabetes, aged between 1 and 39 years after informed consent was obtained as approved by the Medical Ethical Committee of Leiden University Medical Center (reference CME05/68C). For all participant information see electronic supplementary material (ESM) Table 1.
Immunohistochemistry on neighbouring pancreatic sections from the DiViD study and control participants was performed using anti-sulfatide antibody Sulph I (a gift from P. Fredman, Gothenburg University, Sweden ; diluted 1:150) or guinea pig anti-insulin (Dako, Ely, UK; diluted 1:700). Visualisation was performed using ultraView Universal DAB Detection Kit (Roche, Basel, Switzerland). The light microscope BX51 (Olympus America, Melville, NY, USA) was used to analyse the stained specimens. For the UK sections, immunohistochemistry was visualised using Dako REAL EnVision Detection System, Peroxidase/DAB+ (Dako) and light microscope Nikon 50i Eclipse (Nikon, Kingston-upon-Thames, UK). The relative sulfatide level in pancreatic islets was compared with control participants without diabetes. Staining in all control participants was set to one (100%) and the staining intensity in minimum 30 islets from each donor was evaluated.
Pancreatic sections were stained with an anti-sulfatide antibody (diluted 1:150) and a secondary Alexa Fluor 488 antibody (Life Technologies, Paisley, UK; diluted 1:400). Pancreatic sections were co-stained with an anti-glucagon antibody raised in rabbit (Abcam, Cambridge, UK; diluted 1:4000) and with guinea pig anti-insulin (Dako; diluted 1:700) plus relevant secondary antibodies labelled with Alexa Fluor 647 and Alexa Fluor 568 (Life Technologies; (diluted 1:400). Images were captured under fluorescence illumination using a Leica AF6000 microscope (Leica, Milton Keynes, UK). Leica application suite X software (Lecia) was used to remove background staining and crop images.
Isolated pancreatic human islets were incubated overnight at 4°C with Sulph I (diluted 1:1000) and washed in 1% PBS-BSA. Next the islets were incubated overnight at 4°C with 1 nm gold labelled goat anti-mouse IgG (Aurion, Wageningen, the Netherlands; diluted as 1:300). The islets were postfixed in 2% glutaraldehyde for 2 h, before silver enhancement using AURION R-GENT SE-EM (Aurion). The islets were then washed in distilled water before osmication in 1% OsO4 diluted in 0.1 mol/l cacodylate buffer. After washing in 0.1 mol/l cacodylate buffer, the specimens were dehydrated in alcohol and embedded in Epon Resin 812 before ultra-sections were examined in a Philips 208 electron microscope (Philips, Eindhoven, the Netherlands).
Frozen tissue (optimal cutting temperature [OCT]) sections were obtained from the nPOD  and DiViD tissue collections. Tissue slides were fixed and laser-capture of islets conducted as previously described . All islets in two to five sections of tissue from each donor were captured and pooled and RNA extracted using the Arcturus PicoPure RNA Isolation Kit (Applied Biosystems, Grand Island, NY, USA). Quality and quantity of RNA was determined on a Bioanalyzer 2100 instrument (Agilent Technologies, Santa Clara, CA, USA). Samples with sufficient quantity and quality of RNA were then subjected to gene expression analysis using Affymetrix expression arrays (GeneChip Human Gene 2.0 ST) and scaled normalised gene expression values produced as previously described . The normalised expression data for 70 genes of interest were then subjected to analysis as described below.
The 70 genes examined at the RNA level were also evaluated using GWAS to look for a genetic association with type 1 diabetes. Immunochip SNPs for type 1 diabetes were retrieved from Onengut-Gumuscu et al 2015 . A cut-off p value <0.02 was used to retrieve nominally significant SNPs. SNPs within (±100 kb flanking regions) of the examined genes were identified for further analysis. We used Encyclopedia of DNA Elements (ENCODE) regulatory features (ChIP-Seq peaks, DNase I hypersensitivity peaks, DNase I footprints) from University of California Santa Cruz (UCSC) genome browser  (http://genome.ucsc.edu/) and RegulomeDB  to identify potential regulatory SNPs likely to affect the expression of the associated gene. We also integrated data from multiple expression quantitative trait loci (eQTL) studies [24, 25, 26] to identify SNPs associated with changes in expression (cis-eQTLs) of their associated gene. The cis-eQTL effects were calculated using linear regression models in the selected tissues (whole blood, fibroblast and lymphoblastoid cell lines) using a cis window of ±1 MB around the transcription start site at significance level of p < 0.05 [24, 25, 26]. SNPs mapping to HLA regions were excluded from the analysis.
Peripheral blood was collected from 71 individuals with type 1 diabetes. Peripheral blood mononuclear cells (PBMCs) were isolated by Ficoll density gradient centrifugation and resuspended in Iscove’s Modified Dulbecco’s Media (IMDM) (Life Technologies, Paisley, UK.) containing 10% heat-inactivated human serum (HS; Sanquin, the Netherlands). PBMCs were subsequently tested for the presence of autoreactive T cells using a T cell proliferation assay.
SNP genotyping and genetic risk score
DNA was isolated from PBMCs of individuals with type 1 diabetes using the DNeasy Blood & Tissue Kit (Qiagen Benelux, Venlo, the Netherlands). DNA concentration was determined by NanoDrop and samples were concentrated at 50 ng/μl. SNP genotyping was performed on the Infinium ImmunoArray-24 v2 BeadChip Kit (Illumina, Eindhoven, the Netherlands) according to the manufacturer’s protocol.
To test the cumulative effect of identified SNPs on islet autoimmunity, we computed a genetic risk score (GRS) in all individuals with type 1 diabetes. GRS is the sum of the number of risk alleles (0, 1 or 2) multiplied by the natural log of the OR for each SNP, divided by the total number of SNPs. SNPs were also individually analysed. The SNPs selected for the study were based on the SNP with the lowest p value and the highest OR was examined for each of the genes identified in the GWAS analysis.
T cell proliferation assay
A T cell proliferation assay was performed on PBMCs freshly isolated from individuals with type 1 diabetes to investigate autoimmunity towards GAD65, preproinsulin (PPI), islet antigen-2 (IA-2) and insulin-defective ribosomal product (INS-DRiP). Human recombinant proteins GAD65, PPI, IA-2 and INS-DRiP were produced as previously described [27, 28]. PBMCs were seeded (150,000/well) in round-bottomed 96-well microculture plates (Greiner, Nürtingen, Germany) and cultured for 5 days in IMDM containing 10% HS at 37°C in 5% CO2, in a humidified atmosphere. Cells were cultured in triplicates in medium alone, with 10 μg/ml recombinant GAD65, PPI, IA-2 or INS-DRiP or with recombinant IL-2 (35 units/mL; Genzyme, Cambridge, MA, USA) as positive control. After 16 h of culture, 50 μl RPMI medium 1640 (Dutch modification; Gibco, Thermo Fisher Scientific, Waltham, MA, USA) containing 18500 Bq [3H]thymidine (DuPont, Boston, MA, USA) was added per well. After the cells were harvested on filters with an automated harvester, proliferation was determined by the measurement of 3H-thymidine incorporation in an automatic liquid scintillation counter. All results are calculated as mean counts per min (CPM) in the presence of antigen and compared with medium alone. Stimulation index (SI) = mean CPMANTIGEN/mean CPMMEDIUM. An SI ≥3 is considered positive. In three participants, INS-DRiP was not measured.
Animals and diabetes monitoring
Female NOD mice (Taconic Biosciences, Hudson, NY, USA) were kept in a specific pathogen-free (SPF) animal facility (temperature 22°C, 12 h light cycle, air change 16 times per h and humidity 55 ± 10%). Animal experiments were approved by the Animal Experiments Inspectorate, Ministry of Food, Agriculture and Fisheries of Denmark (reference 2012-15-2934-00086) and experiments performed according to international guidelines for the care and use of laboratory animals. The mice had free access to drinking water and standard Altromin 1320 diet (Altromin, Lage, Germany) with or without 0.01% fenofibrate (Sigma, St Louis, MO, USA). The mice were inspected weekly for diabetes from an age of 84 days using FreeStyle Lite (Abbott, Chicago, IL, USA) glucose monitoring. Diabetes diagnosis was based on two blood glucose measurements >12 mmol/l with an interval of 2 days, all measurements were made between 09:00 and 13:00 hours. The date of the first blood glucose measurement >12 mmol/l was used as diabetes onset date. Mice were killed by cervical dislocation at onset of diabetes or at the age of 217 days. Distribution of animals into groups and diabetes monitoring was not performed blinded. In the reversal studies, fenofibrate treatment was immediately commenced at the onset of diabetes and continued for 3 weeks. No inclusion or exclusion criteria were used.
Insulitis and sulfatide scoring of NOD mice
Insulitis score was calculated from six mice in each group, at 13 weeks old. Pancreases were removed, fixed in 10% neutral buffered formalin overnight, embedded in paraffin and sectioned in 5 μm sections that were subsequently stained in haematoxylin and eosin. The sections were evaluated randomly and blinded using an Olympus BX53 microscope (Olympus America). Twenty-five islets from each mouse were scored according to the following scale: 0, no infiltration; 1, intact islets but with few mononuclear cells surrounding the islets; 2, peri-insulitis; 3, islet infiltration below 50% and 4, islet infiltration above 50%. Neighbouring slides were stained for sulfatide and scanned using NanoZoomer-XR (Hamamatsu, Hamamatsu City, Japan). For each mouse one slide was scored and the staining intensity was evaluated using a scale from 0 to 4 with 0 denoting no sulfatide and 4 denoting intensity as seen in neurons. The scoring was performed blinded.
The statistical analysis was performed using GraphPad Prism version 6.01 (GraphPad, La Jolla, CA, USA) and data is shown as mean ± SEM unless otherwise noted. The cumulative diabetes incidence was assessed using logrank Mantel–Cox. Correlation between insulitis and sulfatide was performed with a linear regression. For comparisons between groups a two-tailed unpaired Student’s t test or a one-way ANOVA with Tukey’s multiple comparisons test. The percentage of participants with a positive T cell response was evaluated using a χ2 test and two-proportions Z test. Data were natural log-transformed before analysis if not normally distributed. A p value of less than 0.05 was considered significant. *p < 0.05; **p < 0.01; ***p < 0.001; ****p < 0.0001.
Sulfatide is reduced in human pancreatic islets at the onset of type 1 diabetes
Analysis of multiple islets from four pancreases revealed that sulfatide was found only in beta cells, but absent in alpha cells (Fig. 1c), which was confirmed by electron microscopy (Fig. 1d). Sulfatide was occasionally detectable in islet cells negatively for both insulin and glucagon (ESM Fig. 1).
Reduced expression of enzymes involved in sphingolipid metabolism in human pancreatic islets at the onset of type 1 diabetes
SNPs in promoter regions of enzymes involved in sphingolipid metabolism associate with the development of type 1 diabetes
Genes related to sphingolipid metabolism are in type 1 diabetes-associated genetic regions
Total type 1 diabetes SNPs (p<0.02)
cis-eQTL p value
2.6×10−11 (whole blood)
0.032 (whole blood);
8.4×10−4 (cells: transformed fibroblasts)
1.4×10−7 (cells: transformed fibroblasts)
2.3×10−5 (cells: EBV-transformed lymphocytes);
0.033 (whole blood)
2.7×10−3 (cells: transformed fibroblasts)
7.7×10−5 (cells: transformed fibroblasts);
0.008 (cells: EBV-transformed lymphocytes)
Increased genetic risk defined by sphingolipid-related SNPs is associated with reduced proliferation of islet-specific T cells in individuals with type 1 diabetes
We wanted to evaluate whether the identified SNPs could affect islet autoimmunity. The most promising SNPs (lowest p value and highest OR for each gene, as shown in Table 1) were selected and a GRS based on the number of risk alleles and OR per SNP was computed. The GRS was correlated to proliferation of T cells in response to islet autoantigens GAD65, PPI, IA-2 and INS-DRiP  as measured by the SI. A cohort of 71 individuals with type 1 diabetes were divided between three risk groups: low genetic risk (GRS = 0.11–0.14, n = 20); intermediate (GRS = 0.14–0.16, n = 37) and high (GRS > 0.16, n = 14).
Increasing sulfatide levels in mice pancreatic islets is associated with prevention of autoimmune diabetes in NOD mice
To support these findings, GWAS data were interrogated and SNPs in the promoter regions of eight genes influencing sphingolipid levels were identified (Fig. 5b). Among these, the OR of 1.47 calculated for B4GALNT1 ranks it among the highest risk genes implicated in the predisposition to type 1 diabetes (ESM Fig. 3). All SNPs identified here correlated with predisposition to type 1 diabetes but not type 2 diabetes. It should be noted that the SNPs identified could be inhibitory or activating and so the overall effect of these SNPs on sphingolipid composition is difficult to predict.
The most promising SNPs were found to be associated with lower rates of T cell proliferation when these cells were presented with beta cell autoantigens (Fig. 5c). This effect was linked with autoimmunity to PPI and to a lesser degree IA-2 and INS-DRiP, but not GAD65. A possible explanation for this seemingly paradoxical finding is that sulfatide is involved in PPI folding  and likely the formation of INS-DRiP. T cells recognise folded PPI and so impaired folding due to less sulfatide would lead to a lower immune response against PPI. A lack of sulfatide on the other hand would not affect autoimmunity to GAD65.
Fenofibrate has been in use for decades to reduce LDL-cholesterol, triacylglycerol and cholesterol levels and has shown beneficial effects on the prevention of diabetic neuropathy and retinopathy . Here we demonstrate that NOD mice were protected from insulitis and diabetes by early exposure to fenofibrate and that this correlated with an increase in islet sulfatide levels (Fig. 5d,e). The positive effect of fenofibrate, however, cannot be solely credited to the increased amount of sulfatide as fenofibrate is also likely to affect other aspects of lipid biology. Previous studies have otherwise shown that the ceramide synthase inhibitor FTY720  prevented diabetes development in NOD mice , highlighting the diverse roles of different sphingolipids in diabetes pathology.
In conclusion, we provide human evidence of an altered islet sphingolipid metabolism in type 1 diabetes. Increasing sulfatide levels prevents diabetes in NOD mice suggesting that upregulation of sulfatide biosynthesis may represent a promising therapeutic route in type 1 diabetes.
KB and LJH conceived and planned the study. KD-J, LK, and KFH conceived and planned the DiViD study together. LK, KFH, and KD-J provided the DiViD tissue. LJH and JPH planned and performed the immunohistochemistry on the DiViD tissue. LJH and MAR planned, performed and analysed the immunofluorescence study. MAR performed the immunohistochemistry on tissue from the UK. KB and NGM planned and supervised the study on tissue from the UK. KB planned and performed the electron microscopy. ICG and CEM planned, performed and analysed the microarray analysis. LK, KFH, and KD-J helped plan and supervised the microarray study. LJH and KB selected the genes to study and helped with the analysis of the microarray study. SK and FP planned, performed and analysed the GWAS study together with LJH and KB. LJH and KB designed, performed experiments and analysed data in the NOD mice study. JPH performed the insulitis and sulfatide scoring of the NOD mice. LAC, BPCK and BOR designed and executed the immunological studies. LJH wrote the manuscript with input from all authors. All authors approved the final manuscript. KB is the guarantor of this study.
The DiViD study was funded by the South-Eastern Norway Regional Health Authority (grant to KD-J), the Novo Nordisk Foundation (grant to KD-J), and through the PEVNET (Persistent Virus Infection in Diabetes Network) Study Group funded by the European Union’s Seventh Framework Programme (FP7/2007-2013) under grant agreement number 261441 PEVNET. Additional grant support from National Institutes of Health, UC4 DK104155, the JDRF (47-2013-520), Dutch Diabetes Research Foundation, and Stichting DON (DFN2013.40.1693), and Kirsten and Freddy Johansens Fond.
Duality of interest
The authors declare that there is no duality of interest associated with this manuscript.
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