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Theoretical and Applied Genetics

, Volume 133, Issue 1, pp 87–102 | Cite as

Early transcriptional responses to soybean cyst nematode HG Type 0 show genetic differences among resistant and susceptible soybeans

  • Esmaeil Miraeiz
  • Usawadee Chaiprom
  • Alireza Afsharifar
  • Akbar Karegar
  • Jenny M. Drnevich
  • Matthew E. HudsonEmail author
Original Article

Abstract

Key message

Root transcriptome profiling of three soybean cultivars and a wild relative infected with soybean cyst nematode at migratory phase revealed differential resistance pathway responses between resistant and susceptible genotypes.

Abstract

The soybean cyst nematode (SCN), Heterodera glycines, is the most serious pathogen of soybean production throughout the world. Using resistant cultivars is the primary management strategy against SCN infestation. To gain insight into the still obscure mechanisms of genetic resistance to nematodes in different soybean genotypes, RNA-Seq profiling of the roots of Glycine max cv. Peking, Fayette, Williams 82, and a wild relative (Glycine soja PI 468916) was performed during SCN infection at the migratory phase. The analysis showed statistically significant changes of expression beginning at eight hours after inoculation in genes associated with defense mechanisms and pathways, such as the phenylpropanoid biosynthesis pathway, plant innate immunity and hormone signaling. Our results indicate the importance of the early plant response to migratory phase nematodes in pathogenicity determination. The transcriptome changes occurring during early SCN infection included a number of genes and pathways specific to the different resistant genotypes. We observed the most extensive resistant transcriptome reaction in PI 468916, where the resistant response was qualitatively different from that of commonly used G. max varieties.

Notes

Acknowledgements

This work was funded by the United Soybean Board (USB). The authors wish to thank Dr. A. Colgrove for preparing the nematode egg mass and C. Fliege for wild soybean seeds and her advice for the germination process. EM would like to thank the Ministry of Science, Research and Technology of Iran for fellowship support.

Author Contribution statement

EM designed and performed the experiments, analyzed the data and wrote the draft manuscript; UC designed and performed the experiments, revised the manuscript and analyzed the data with help from JD; AA and AK revised the manuscript; MH led the project, and revised and reviewed the manuscript.

Compliance with ethical standards

Conflict of interest

The authors of this manuscript declare that they have no conflict of interest.

Supplementary material

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Copyright information

© Springer-Verlag GmbH Germany, part of Springer Nature 2019

Authors and Affiliations

  1. 1.Department of Plant Protection, School of AgricultureShiraz UniversityShirazIran
  2. 2.PhD Program in InformaticsUniversity of Illinois at Urbana-ChampaignUrbanaUSA
  3. 3.Plant Virology Research Center, School of AgricultureShiraz UniversityShirazIran
  4. 4.High Performance Biological Computing (HPCBio), Roy J. Carver Biotechnology CenterUniversity of Illinois at Urbana-ChampaignUrbanaUSA
  5. 5.Department of Crop SciencesUniversity of Illinois at Urbana-ChampaignUrbanaUSA

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