Abstract
Chapio is a spring wheat developed by CIMMYT in Mexico by a breeding program that focused on multigenic resistances to leaf rust and stripe rust. A population consisting of 277 recombinant inbred lines (RILs) was developed by crossing Chapio with Avocet. The RILs were genotyped with DArT markers (137 randomly selected RILs) and bulked segregant analysis conducted to supplement the map with informative SSR markers. The final map consisted of 264 markers. Phenotyping against stripe rust was conducted for three seasons in Toluca, Mexico and at three sites over two seasons (total of four environments) in Sichuan Province, China. Significant loci across the two inter-continental regions included Lr34/Yr18 on 7DS, Sr2/Yr30 on 3BS, and a QTL on 3D. There were significant genotype × environment interactions with resistance gene Yr31 on 2BS being effective in most of the Toluca environments; however, a late incursion of a virulent pathotype in 2009 rendered this gene ineffective. This locus also had no effect in China. Conversely, a 5BL locus was only effective in the Chinese environments. There were also complex additive interactions. In the Mexican environments, Yr31 suppressed the additive effect of Yr30 and the 3D locus, but not of Lr34/Yr18, while in China, the 3D and 5BL loci were generally not additive with each other, but were additive when combined with other loci. These results indicate the importance of maintaining diverse, multi-genic resistances as Chapio had stable inter-continental resistance despite the fact that there were QTLs that were not effective in either one or the other region.
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Agenbag GM, Pretorius ZA, Boyd LA, Bender CM, Prins R (2012) Identification of adult plant resistance to stripe rust in the cultivar Cappelle-Desprez. Theor Appl Genet 125:109–120
Bariana HS, Hayden MJ, Ahmed NU, Bell JA, Sharp PJ, McIntosh RA (2001) Mapping of durable adult plant and seedling resistances to stripe rust and stem rust diseases in wheat. Aust J Agric Res 52:1247–1255
Bariana HS, Bansal UK, Schmidt A, Lehmensiek A, Kaur J, Miah H, Howes N, McIntyre CL (2010) Molecular mapping of adult plant stripe rust resistance in wheat and identification of pyramided QTL genotypes. Euphytica 176:251–260
Börner A, Röder MS, Unger O, Meinel A (2000) The detection and molecular mapping of a major resistance gene for non-specific adult-plant disease resistance against stripe rust (Puccinia striiformis) in wheat. Theor Apppl Genet 100:1095–1099
Boukhatem N, Baret PV, Mingeot D, Jacquemin JM (2002) Quantitative trait loci for resistance against yellow rust in two wheat-derived recombinant inbred line populations. Theor Appl Genet 104:111–118
Buetow KH, Chakaravarti A (1987) Multipoint gene mapping using seriation. I. General methods. Am J Hum Genet 41:180–188
Dedryver F, Paillard S, Mallard S, Robert O, Trottet M, Nègre S, Verplancke G, Jahier J (2009) Characterization of genetic components involved in durable resistance to stripe rust in the bread wheat ‘Renan’. Phytopathology 99:968–973
Dyck PL (1987) The association of a gene for leaf rust resistance with the chromosome 7D suppressor of stem rust resistance in common wheat. Genome 29:467–469
Falk CT (1989) A simple scheme for preliminary ordering of multiple loci: application to 45 CF families. In: Elston RC, Spence MA, Hodge SE, MacCluer JW (eds) Multipoint mapping and linkage based upon affected pedigree members. Genetic Workshop 6, New York, pp 17–22
Feng J, Zuo L-L, Zhang Z-Y, Lin R-M, Cao Y-Y, Xu S-C (2011) Quantitative trait loci for temperature-sensitive resistance to Puccinia striiformis f. sp. Tritici in wheat cultivar Flinor. Euphytica 178:321–329
Guo Q, Zhang Z-J, Xu Y-B, Li G-H, Feng J, Zhou Y (2008) Quantitative trait loci for high-temperature adult-plant and slow-rusting resistance to Puccinia striiformis f. sp. Tritici in wheat cultivars. Phytopathology 98:803–809
Hao Y-F, Chan Z-B, Wang Y-Y, Bland D, Buck J, Brown-Guedira G, Johnson J (2011) Characterization of a major QTL for adult plant resistance to stripe rust in US soft red winter wheat. Theor Appl Genet 123:1401–1411
Hare RA, McIntosh M (1979) Genetic and cytogenetic studies of durable adult-plant resistances in Hope and related cultivars to wheat rusts. Z Planzenzücht 83:350–367
Herrera-Fossel SA, Lagudah ES, Huerta-Espino J, Hayden MJ, Bariana HS, Singh D, Singh RP (2011) New slow-rusting leaf rust and stripe rust resistance genes Lr67 and Yr46 in wheat are pleiotropic or closely linked. Theor Appl Genet 122:239–249
Hoisington D, Khairallah M, Gonzalez-de-Leon D (1994) Laboratory protocols: CIMMYT applied molecular genetics laboratory, 2nd edn. CIMMYT, Mexico
Hovmøller MS, Yahyaoui AH, Milus EA, Justesen AF (2008) Rapid global spread of two aggressive strains of a wheat rust fungus. Mol Ecol 17:3818–3826
Jagger LJ, Newell C, Berry ST, MacCormack R, Boyd LA (2011) The genetic characterisation of stripe rust resistance in the German wheat cultivar Alcedo. Theor Appl Genet 122:723–733
Krattinger SG, Lagudah ES, Spielmeyer W, Singh RP, Huerta-Espino J, McFadden H, Bossolini E, Selter LL, Keller B (2009) A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat. Science 323:1360–1363
Lagudah ES (2011) Molecular genetics of race non-specific rust resistance in wheat. Euphytica 179:81–91
Lagudah ES, McFadden H, Singh RP, Huerta-Espino J, Bariana HS, Spielmeyer W (2006) Molecular genetic characterization of the Lr34/Yr18 slow rusting resistance gene region in wheat. Theor Appl Genet 114:21–30
Lagudah ES, Krattinger SG, Herrera-Foessel SA, Singh RP, Huerta-Espino J, Spielmeyer A, Brown-Guedira G, Selter LL, Keller B (2009) Gene-specific markers for the wheat gene Lr34/Yr18/Pm38 which confers resistance to multiple fungal pathogens. Theor Appl Genet 119:889–898
Lan C-X, Liang S–S, Zhou X-C, Zhou G, Lu Q-L, Xia X-C, He Z-H (2010) Identification of genomic regions controlling adult-plant stripe rust resistance in Chinese landrace Pingyuan 50 through bulked segregant analysis. Phytopathology 100:313–318
Li H, Ye G, Wang J (2007) A modified algorithm for the improvement of composite interval mapping. Genetics 175:361–374
Lillemo M, Asalf B, Singh RP, Huerta-Espino J, Chen XM, He ZH, Bjørnstad Å (2008) The adult plant rust resistance loci Lr34/Yr18 and Lr46/Yr29 are important determinants of partial resistance to powdery mildew in bread wheat line Saar. Theor Appl Genet 116:1155–1166
Lillemo M, Joshi AK, Prasad R, Chand R, Singh RP (2012) QTL for spot blotch in bread wheat line Saar co-locate to the biotrophic disease resistance loci Lr34 and Lr46. Theor Appl Genet. doi:10.1007/s00122-012-2012-6
Lin F, Chen XM (2007) Genetics and molecular mapping of genes for race-specific all-stage resistance and non-race-specific high-temperature adult-plant resistance to stripe rust in spring wheat cultivar Alpowa. Theor Appl Genet 114:1277–1287
Lin F, Chen XM (2009) Quantitative trait loci for non-race-specific, high-temperature adult-plant resistance to stripe rust in wheat cultivar Express. Theor Appl Genet 118:631–642
Lu Y-M, Lan C-X, Linag S-S, Zhou X-C, Liu D, Zhou G, Lu Q-L, Jing J-X, Wang M-N, Xia X-C, He Z-H (2009) QTL mapping for adult-plant resistance to stripe rust in Italian common wheat cultivars Libellula and Strampelli. Theor Appl Genet 119:1349–1359
Mago R, Tabe L, McIntosh RA, Pretorius Z, Kota R, Paux E, Wicker T, Breen J, Lagudah ES, Ellis JG (2011) A multiple resistance locus on chromosome arm 3BS in wheat confers resistance to stem rust (Sr2), leaf rust (Lr27) and powdery mildew. Theor Appl Genet 123:615–623
Mallard S, Gaudet D, Aldeia A, Abelard C, Besnard AL, Sourdille P, Dedryver F (2005) Genetic analysis of durable resistance to yellow rust in bread wheat. Theor Appl Genet 110:1401–1409
McFadden ES (1930) A successful transfer of emmer characters to vulgare wheat. J Am Soc Agron 22:1020–1034
McIntosh RA, Dubcovsky J, Rogers WJ, Morris C, Appels R, Xia XC (2011) Catalogue of gene symbols for wheat: 2011 supplement. http://www.shigen.nig.ac.jp/wheat/komugi/genes/macgene/supplement2011.pdf
Melichar JPE, Berry S, Newell C, MacCormack R, Boyd LA (2008) QTL identification and microphenotype characterisation of the developmentally regulated yellow rust resistance in the UK wheat cultivar Guardian. Theor Appl Genet 117:391–399
Milus EA, Kristensen K, Hovmøller MS (2009) Evidence for increased aggressiveness in a recent widespread strain of Puccinia striiformis f. sp. Tritici causing stripe rust of wheat. Phytopathology 99:89–94
Navabi A, Tewari JP, Singh RP, McCallum B, Laroche A, Briggs KG (2005) Inheritance and QTL analysis of durable resistance to stripe and leaf rusts in an Australian cultivar, Triticum aestivum ‘Cook’. Genome 48:97–107
Peterson RF, Campbell AB, Hannah AE (1948) A diagrammatic scale of estimating rust severity on leaves and stems of cereals. Can J Res Sec C 26:496–500
Ramburan VP, Pretorius ZA, Louw JH, Boyd LA, Smith PH, Boshoff WHP, Prins R (2004) A genetic analysis of adult plant resistance to stripe rust in wheat cultivar Kariega. Theor Appl Genet 108:1426–1433
Rosewarne GM, Singh RP, Huerta-Espino J, Rebetzke GJ (2008) Quantitative trait loci for slow-rusting resistance in wheat to leaf rust and stripe rust identified with multi-environment analysis. Theor Appl Genet 116:1027–1034
Rosewarne GM, Singh RP, Huerta-Espino J, Herrera-Foessel SA, Forrest KL, Hayden MJ, Rebetzke GJ (2012) Analysis of leaf and stripe rust severities reveals pathotype changes and multiple minor QTLs associated with resistance in an Avocet × Pastor wheat population. Theor Appl Genet 124:1283–1294
Santra DK, Chen XM, Santra M, Campbell KG, Kidwell KK (2008) Identification and mapping QTL for high-temperature adult-plant resistance to stripe rust in winter wheat (Triticum aestivum L.) cultivar ‘Stephens’. Theor Appl Genet 117:793–802
Singh RP, Huerta-Espino J (2003) Effects of leaf rust resistance gene Lr34 on components of slow rusting at seven growth stages in wheat. Euphytica 129:371–376
Singh RP, Rajaram S (1994) Genetics of adult plant resistance to stripe rust in ten spring bread wheats. Euphytica 72:1–7
Singh RP, Huerta-Espino J, Rajaram S (2000a) Achieving near-immunity to leaf and stripe rusts in wheat by combining slow rusting resistance genes. Acta Phytopathol Hun 35:133–139
Singh RP, Nelson JC, Sorrells ME (2000b) Mapping Yr28 and other genes for resistance to stripe rust in wheat. Crop Sci 40:1148–1155
Singh RP, William HM, Huerta-Espino J, Crosby M (2003) Identification and mapping of gene Yr31 for resistance to stripe rust in Triticum aestivum cultivar Pastor. In: Pogna NE, Romano N, Pogna EA, Galterio G (eds) Proceedings 10th international wheat genetics symposium, vol 1. Instituto Sperimentale per la Cerealcoltura, Rome, pp 411–413
Spielmeyer W, McIntosh RA, Kolmer J, Lagudah ES (2005) Powdery mildew resistance and Lr34/Yr18 genes for durable resistance to leaf and stripe rust cosegregate at a locus on the short arm of chromosome 7D of wheat. Theor Appl Genet 111:731–735
Suenaga K, Singh RP, Huerta-Espino J, William HM (2003) Microsatellite Markers for genes Lr34/Yr18 and other quantitative trait loci for leaf rust and stripe rust resistance in bread wheat. Phytopathology 93:881–890
William HM, Singh RP, Huerta-Espino J, Palacios G, Suenaga K (2006) Characterization of genetic loci conferring adult plant resistance to leaf rust and stripe rust in spring wheat. Genome 49:977–990
Yang J, Hu C-C, Ye X-Z, Zhu J (2005) QTLNetwork 2.0. Institute of Bioinformatics, Zhejiang University, Hangzhou, China. (http://ibi.zju.edu.cn/software/qtlnetwork)
Zhang L, Li H, Li Z, Wang J (2008) Interactions between markers can be caused by the dominance effect of QTL. Genetics 180:1177–1190
Zwart RS, Thompson JP, Milgate AW, Bansal UK, Williamson PM, Raman H, Bariana HS (2010) QTL mapping of multiple foliar disease and root-lesion nematode resistances in wheat. Mol Breed 26:107–124
Acknowledgments
The study was supported by The Ministry of Science and Technology of China (Grant No. 2011DFG33350), Science & Technology Department of Sichuan Province (Grant No. 2010HH0018, 2011JQ0036, 2012JQ0013) and the Grains Research and Development Council of Australia (CIM00013 and CIM00015). Thanks to Ky Mathews for providing statistical support.
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Communicated by B. Keller.
E.-N. Yang and G. M. Rosewarne are contributed equally for this work.
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Yang, EN., Rosewarne, G.M., Herrera-Foessel, S.A. et al. QTL analysis of the spring wheat “Chapio” identifies stable stripe rust resistance despite inter-continental genotype × environment interactions. Theor Appl Genet 126, 1721–1732 (2013). https://doi.org/10.1007/s00122-013-2087-8
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DOI: https://doi.org/10.1007/s00122-013-2087-8