Theoretical and Applied Genetics

, Volume 116, Issue 5, pp 613–622 | Cite as

Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa × O. rufipogon cross

  • Xiaobo Xie
  • Fengxue Jin
  • Mi-Hee Song
  • Jung-Pil Suh
  • Hung-Goo Hwang
  • Yeon-Gyu Kim
  • Susan R. McCouch
  • Sang-Nag Ahn
Original Paper


A high-resolution physical map targeting a cluster of yield-related QTLs on the long arm of rice chromosome 9 has been constructed across a 37.4 kb region containing seven predicted genes. Using a series of BC3F4 nearly isogenic lines (NILs) derived from a cross between the Korean japonica cultivar Hwaseongbyeo and Oryza rufipogon (IRGC 105491), a total of seven QTLs for 1,000-grain weight, spikelets per panicle, grains per panicle, panicle length, spikelet density, heading date and plant height were identified in the cluster (P ≤ 0.0001). All seven QTLs were additive, and alleles from the low-yielding O. rufipogon parent were beneficial in the Hwaseongbyeo background. Yield trials with BC3F4 NILs showed that lines containing a homozygous O. rufipogon introgression in the target region out-yielded sibling NILs containing Hwaseongbyeo DNA by 14.2–17.7%, and out-yielded the Hwaseongbyeo parent by 16.2–23.7%. While higher yielding plants containing the O. rufipogon introgression were also taller and later than controls, the fact that all seven of the QTLs were co-localized in the same 37.4 kb interval suggests the possibility that a single, pleiotropic gene acting as a major regulator of plant development may control this suite of agronomically important plant phenotypes.



1,000-Grain weight



This study was supported by grants to S.N.A. from the BioGreen 21 project (Code No. 20070301034034) of the RDA, from the Crop Functional Genomics Center of the 21st Century Frontier Research Program (Project no. CG3113), Republic of Korea.


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Copyright information

© Springer-Verlag 2007

Authors and Affiliations

  • Xiaobo Xie
    • 1
    • 2
  • Fengxue Jin
    • 1
  • Mi-Hee Song
    • 1
  • Jung-Pil Suh
    • 3
  • Hung-Goo Hwang
    • 3
  • Yeon-Gyu Kim
    • 3
  • Susan R. McCouch
    • 4
  • Sang-Nag Ahn
    • 1
  1. 1.College of Agriculture and Life SciencesChungnam National UniversityDaejeonSouth Korea
  2. 2.Institute of HorticultureZhejiang Academy of Agricultural SciencesHangzhouChina
  3. 3.National Institute of Crop ScienceRural Development AdministrationSuwonSouth Korea
  4. 4.Department of Plant Breeding and GeneticsCornell UniversityIthacaUSA

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