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Theoretical and Applied Genetics

, Volume 114, Issue 3, pp 569–584 | Cite as

Most significant genome regions involved in the control of earliness traits in bread wheat, as revealed by QTL meta-analysis

  • E. HanocqEmail author
  • A. Laperche
  • O. Jaminon
  • A. -L. Lainé
  • J. Le Gouis
Original Paper

Abstract

Earliness is one of the most important adaptation traits in plant breeding. Our purpose was to identify the genome regions of bread wheat involved in the control of earliness and its three components: photoperiod sensitivity (PS), vernalization requirement (VR) and intrinsic earliness (IE). A QTL meta-analysis was carried out to examine the replicability of QTL across 13 independent studies and to propose meta-QTL (MQTL). Initial QTL were projected on a recent consensus map (2004). Quality criteria were proposed to assess the reliability of this projection. These criteria were based on the distances between markers in the QTL regions. Chromosomes of groups 2 and 5 had a greater incidence on earliness control as they carry the known, major genes Ppd and Vrn. Other chromosome regions played an intermediate role in earliness control: 4A [heading date (HD) Meta-QTL], 4B (HD MQTL), 2B (VR MQTL) and 5B (IE MQTL). Markers at this four MQTL should prove helpful in marker-assisted selection, to better control earliness.

Keywords

Common Marker Head Date Photoperiod Sensitivity Vernalization Requirement Earliness Trait 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Notes

Acknowledgments

We would like to thank M. Bernard and M. R. Perretant from the INRA Centre in Clermont-Ferrand, France, for kindly supplying data on the heading date and genotyping of the Eurêka × Renan population and genotyping data on Apache × Ornicar population, respectively. We are particularly grateful to A. J. Worland of JIC, Norwich, UK, and his team for generously supplying Mercia × Mercia (Ciano 67–2D) seeds. G. Charmet, INRA, Clermont-Ferrand and M. Rousset, INRA, Le Moulon, as well as the reviewers, are also thanked for their valuable comments and suggestions concerning this work.

References

  1. Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, Charcosset A, Joets J (2004) BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics 20:2324–2326PubMedCrossRefGoogle Scholar
  2. Belknap JK, Atkins AL (2001) The replicability of QTL for murine alcohol preference drinking behavior across eight independent studies. Mamm Genome 12:893–899PubMedCrossRefGoogle Scholar
  3. Börner A, Schumann E, Fürste A, Cöster H, Leithold B, Röder MS, Weber WE (2002) Mapping of quantitative trait loci determining agronomic important characters in hexaploid wheat (Triticum aestivum L). Theor Appl Genet 105:921–936PubMedCrossRefGoogle Scholar
  4. Chardon F, Virlon B, Moreau L, Falque M, Joets J, Decousset L, Murigneux A, Charcosset A (2004) Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with rice genome. Genetics 168:2169–2185PubMedCrossRefGoogle Scholar
  5. Darvasi A, Soller M (1997) A simple method to calculate resolving power and confidence interval of QTL map location. Behav Genet 27:125–132PubMedCrossRefGoogle Scholar
  6. Galiba G, Quarrie SA, Sutka J, Morgunov A, Snape JW (1995) RFLP mapping of the vernalization (Vrn1) and frost resistance (Fr1) genes on chromosome 5A of wheat. Theor Appl Genet 90:1174–1179CrossRefGoogle Scholar
  7. Gervais L, Dedryver F, Morlais J-Y, Bodusseau V, Negre S, Bilous M, Groos C, Trottet M (2003) Mapping of quantitative trait loci for field resistance to Fusarium head blight in an European winter wheat. Theor Appl Genet 106:961–970PubMedGoogle Scholar
  8. Glass GV (1976) Primary, secondary and meta-analysis of research. Educ Res 5:3–8Google Scholar
  9. Goffinet B, Gerber S (2000) Quantitative trait loci: a meta-analysis. Genetics 155:463–473PubMedGoogle Scholar
  10. Hanocq E, Sayers EJ, Niarquin M, Le Gouis J, Charmet G, Gervais L, Dedryver F, Duranton N, Marty N, Dufour P, Rousset M, Worland AJ (2003) A QTL analysis for earliness under field and controlled conditions in a bread wheat doubled-haploid population. In: Proceedings of the 12th EWAC conference, UK, p 57Google Scholar
  11. Hanocq E, Niarquin M, Heumez E, Rousset M, Le Gouis J (2004) Detection and mapping of QTL for earliness components in a bread wheat recombinant inbred lines population. Theor Appl Genet 110:106–115PubMedCrossRefGoogle Scholar
  12. Karakousis A, Gustafson JP, Chalmers KJ, Barr AR, Langridge P (2003) A consensus map of barley integrating SSR, RFLP, and AFLP markers. Aust J Agric Res 54:1173–1185CrossRefGoogle Scholar
  13. Kato K, Miura H, Akiyama M, Kuroshima M, Sawada S (1998) RFLP mapping of the three major genes, Vrn1, Q and B1, on the long arm of chromosome 5A of wheat. Euphytica 101:91–95CrossRefGoogle Scholar
  14. Kato K, Miura H, Sawada S (1999) Detection of an earliness per se quantitative trait locus in the proximal region of wheat chromosome 5AL. Plant Breed 118:391–394CrossRefGoogle Scholar
  15. Kato K, Miura H, Sawada S (2002) Characterization of QEet.ocs-5A.1, a quantitative trait locus for ear emergence time on wheat chromosome 5AL. Plant Breed 121:389–393CrossRefGoogle Scholar
  16. Khatkar MS, Thomson PC, Tammen I, Raadsma HW (2004) Quantitative trait loci mapping in dairy cattle: review and meta-analysis. Genet Sel Evol 36:163–190PubMedCrossRefGoogle Scholar
  17. Kulwal PL, Roy JK, Balyan HS, Gupta PK (2003) QTL mapping for growth and leaf characters in bread wheat. Plant Sci 164:267–277CrossRefGoogle Scholar
  18. Laurie DA, Pratchett N, Bezant JH, Snape JW (1995) RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter x spring barley (Hordeum vulgare L.) cross. Genome 38:575–585PubMedGoogle Scholar
  19. Law CN, Worland AJ (1997) Genetic analyses of some flowering time and adaptative traits in wheat. New Phytol 137:19–28CrossRefGoogle Scholar
  20. Law CN, Worland AJ, Giorgi B (1976) The genetic control of ear-emergence time by chromosome 5A and 5D of wheat. Heredity 36:49–58Google Scholar
  21. Law CN, Sutka J, Worland AJ (1978) A genetic study of day-length response in wheat. Heredity 41:185–191Google Scholar
  22. Leonova I, Pestsova E, Salina E, Efremova T, Röder M, Börner A (2003) Mapping of the Vrn-B1 gene in Triticum aestivum using microsatellite markers. Plant Breed 122:209–212CrossRefGoogle Scholar
  23. Masle J, Doussinault G, Sun B (1989) Response of wheat genotypes to temperature and photoperiod in natural conditions. Crop Sci 29:712–721CrossRefGoogle Scholar
  24. Maystrenko OI (1980) Cytogenetic study of the growth habit and ear emergence time on chromosome 2B of wheat. In: Proceedings of the 14th international congress of genetics, vol 1, pp 267–282Google Scholar
  25. Putterill J, Laurie R, Macknight R (2004) It’s time to flower: the genetic control of flowering time. Bioessays 26:363–373PubMedCrossRefGoogle Scholar
  26. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier MH, Leroy P (1998) A microsatellite map of wheat. Genetics 149:2007–2023PubMedGoogle Scholar
  27. Schlegel R (1996) A compendium of reciprocal translocations in wheat. Wheat Inf Serv 83:35–46Google Scholar
  28. Sears ER (1953) Nullisomic analysis in common wheat. Am Nat 87:245–252CrossRefGoogle Scholar
  29. Shindo C, Sasakuma T, Watanabe N, Noda K (2002) Two-gene systems of vernalization requirement and narrow-sense earliness in einkorn wheat. Genome 45:563–569PubMedCrossRefGoogle Scholar
  30. Shindo C, Tsujimoto H, Sasakuma T (2003) Segregation analysis of heading traits in hexaploid wheat utilizing recombinant inbred lines. Heredity 90:56–63PubMedCrossRefGoogle Scholar
  31. Snape JW, Sarma R, Quarrie SA, Fish L, Galiba G, Sutka J (2001) Mapping genes for flowering time and frost tolerance in cereals using precise genetic stocks. Euphytica 120:309–315CrossRefGoogle Scholar
  32. Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109:1105–1114PubMedCrossRefGoogle Scholar
  33. Sourdille P, Snape JW, Cadalen T, Charmet G, Nakata N, Bernard S, Bernard M (2000) Detection of QTLs for heading time and photoperiod response in wheat using a doubled-haploid population. Genome 43:487–494PubMedCrossRefGoogle Scholar
  34. Sourdille P, Cadalen T, Guyomarc’h H, Snape JW, Perretant MR, Charmet G, Boeuf C, Bernard S, Bernard M (2003) An update of the Courtot x Chinese Spring intervarietal molecular marker linkage map for the QTL detection of agronomic traits in wheat. Theor Appl Genet 106:530–538PubMedGoogle Scholar
  35. Stelmakh AF (1990) Geographic distribution of Vrn genes in landraces and improved varieties of spring bread wheat. Euphytica 45:113–118Google Scholar
  36. Stelmakh AF (1998) Genetic systems regulating flowering response in wheat. Euphytica 100:359–369CrossRefGoogle Scholar
  37. Syme JR (1968) Ear emergence of Australian, Mexican and European wheats in relation to time of sowing and their response to vernalization and day. Aust J Exp Agric Anim Husb 8:578–581CrossRefGoogle Scholar
  38. Toth B, Galiba G, Feher E, Sutka J, Snape JW (2003) Mapping genes affecting flowering time and frost resistance on chromosome 5B of wheat. Theor Appl Genet 107:509–514PubMedCrossRefGoogle Scholar
  39. Van Berloo R (1999) GGT: software for the display of graphical genotypes. J Hered 90:328–329CrossRefGoogle Scholar
  40. Visscher PM, Thompson R, Haley CS (1996) Confidence intervals in QTL mapping by bootstrapping. Genetics 143:1013–1020PubMedGoogle Scholar
  41. Weller JL, Reid JB, Taylor SA, Murfet IC (1997) The genetic control of flowering in pea. Trends Plant Sci 2:412–418CrossRefGoogle Scholar
  42. Welsh JR, Keim DL, Pirasteh B, Richards RD (1973) Genetic control of photoperiod response in wheat. In: Proceedings of the 4th international wheat genetics symposium, Missouri, pp 879–884Google Scholar
  43. Worland AJ (1996) The influence of flowering time genes on environmental adaptability in European wheats. Euphytica 89:49–57CrossRefGoogle Scholar

Copyright information

© Springer-Verlag 2006

Authors and Affiliations

  • E. Hanocq
    • 1
    Email author
  • A. Laperche
    • 1
    • 2
  • O. Jaminon
    • 1
  • A. -L. Lainé
    • 1
  • J. Le Gouis
    • 1
  1. 1.Unité Mixte de Recherche INRA/USTL 1281 “Stress abiotiques et différenciation des végétaux cultivés”, Estrées-MonsInstitut National de la Recherche Agronomique (INRA)Péronne CedexFrance
  2. 2.UMR 118 APBV INRA-AgroCampus RennesLe Rheu CedexFrance

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