Theoretical and Applied Genetics

, Volume 109, Issue 6, pp 1105–1114

A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.)

Original Paper

DOI: 10.1007/s00122-004-1740-7

Cite this article as:
Somers, D.J., Isaac, P. & Edwards, K. Theor Appl Genet (2004) 109: 1105. doi:10.1007/s00122-004-1740-7


A microsatellite consensus map was constructed by joining four independent genetic maps of bread wheat. Three of the maps were F1-derived, doubled-haploid line populations and the fourth population was ‘Synthetic’ × ‘Opata’, an F6-derived, recombinant-inbred line population. Microsatellite markers from different research groups including the Wheat Microsatellite Consortium, GWM, GDM, CFA, CFD, and BARC were used in the mapping. A sufficient number of common loci between genetic maps, ranging from 52 to 232 loci, were mapped on different populations to facilitate joining the maps. Four genetic maps were developed using MapMaker V3.0 and JoinMap V3.0. The software CMap, a comparative map viewer, was used to align the four maps and identify potential errors based on consensus. JoinMap V3.0 was used to calculate marker order and recombination distances based on the consensus of the four maps. A total of 1,235 microsatellite loci were mapped, covering 2,569 cM, giving an average interval distance of 2.2 cM. This consensus map represents the highest-density public microsatellite map of wheat and is accompanied by an allele database showing the parent allele sizes for every marker mapped. This enables users to predict allele sizes in new breeding populations and develop molecular breeding and genomics strategies.

Supplementary material

122_2004_1740_esm_data.xls (332 kb)
Consensus Map AlleleDatabase (Excel 340 KB)

Copyright information

© Springer-Verlag 2004

Authors and Affiliations

  1. 1.Agriculture and Agri-Food CanadaCereal Research CentreWinnipegCanada
  2. 2.IDnagenetics, Hill HouseNorwich Research ParkNorwichUK
  3. 3.School of Biological SciencesUniversity of BristolBristolUK

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