A model for cooperative ligand binding at complementary sites of DNA
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Abstract
The process of cooperative binding of ligands to DNA has been classified into different modes. An additional mode of cooperative interaction amongst ligands binding at sites on complementary strands has been emphasised. A statistical mechanical method has been applied to obtain an analytical expression for the fraction of nucleotide sites bound. Theoretical Scatchard plots have been drawn and analysed.
Keywords
Acridine Scatchard Plot Cooperative Binding Complementary Site Large Ligand
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Literature
- Alberts, B. M., F. J. Amodio, M. Jenkins, E. D. Gutmann and F. L. Ferris. 1968. “Studies with DNA-Cellulose Chromatography. I. DNA-binding Protein fromE. coli.”Cold Spring Harbor Symp. Quant. Biol. 33, 289–305.Google Scholar
- Bloomfield, V. A., D. M. Crothers and I. Tinoco, Jr. 1974.Physical Chemistry of Nucleic Acids. Chap. 7. New York: Harper and Row.Google Scholar
- Bradley, D. F. and M. K. Wolf. 1959. “Aggregation of Acridine Dyes on Native and Denatured Deoxyribonucleates.”Proc. natn. Acad. Sci. U.S.A 45, 944–952.CrossRefGoogle Scholar
- Cary, P. D., T. Moss and E. M. Bradbury. 1978. “High Resolution Proton Magnetic Resonance Studies of Chromatin Core Particles.”Eur. J. Biochem. 89, 475–482.CrossRefGoogle Scholar
- Chadwick, P., V. Pirrota, R. Steinberg, N. Hopkins and M. Ptashne. 1970. “The λ and 434 phage repressors.”Cold Spring Harbor Symp. Quant. Biol. 35, 283–294.Google Scholar
- Dougherty, G. and W. J. Pigram. 1982. “Spectroscopic Analysis of Drug-Nucleic Acid Interactions.”CRC Critical Reviews in Biochemistry, February, pp. 103–132.Google Scholar
- Dourlent, M. 1975. “Competttive Cooperative Binding of Small Ligands to a Linear Homopolymer. I. Extension of the Ising Model to the Case of Two Competitive Interactions.”Biopolymers 14, 1717–1738.CrossRefGoogle Scholar
- Epstein, I. R. 1978. “Cooperative and Non-cooperative Binding of Large Ligands to a Finite One-dimensional Lattice. A Model for Ligand-Oligonucleotide Interaction.”Biophys. Chem. 8, 327–339.CrossRefGoogle Scholar
- McGhee, J. D. and P. H. von Hippel. 1974. “Theoretical Aspects of DNA-Protein Interactions: Cooperative and Non-cooperative Binding of Large Ligands to a One-dimensional Homogeneous Lattice.”J. molec. Biol. 86, 469–489.CrossRefGoogle Scholar
- Mukhopadhyay, R. and A. Mookerjee. 1981. “Effect of Gamma-irradiation on Dye-DNA Binding.”Int. J. Radiat. Biol. 39, 143–155.Google Scholar
- Peacocke, A. R. 1975. “The Interaction of Acridines with Nucleic Acids.” InAcridines (Ed. R. M. Acheson), 2nd edn, pp. 723–756. New York: Wiley Interscience.Google Scholar
- Schwarz, G. 1970. “Cooperative Binding to Linear Bipolymers I. Fundamental Static and Dynamic Properties.”Eur. J. Biochem. 12, 442–453.CrossRefGoogle Scholar
- Shick, V. V., A. V. Belyavsky, S. G. Bavykin and A. D. Mirzabekov. 1980. “Primary Organisation of the Nucleosome Core Particles: 1. Sequential Arrangement of Histones Along DNA.”J. molec. Biol. 139, 491–517.CrossRefGoogle Scholar
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© Society for Mathematical Biology 1986