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Potato Research

, Volume 42, Issue 3–4, pp 529–539 | Cite as

New approaches to potato variety identification

  • Robert J. Cooke
Full Papers

Summary

The identification of varieties of potatoes and other crops is important at all stages of production. Traditional approaches have used morphological characters, but modern crop production increasingly demands methods that are more rapid and discriminating. Three new approaches to variety identification are described: (i) image analysis, (ii) gel electrophoresis of proteins, (iii) the use of DNA profiling (molecular markers). The advantages and disadvantages of each approach are considered and possible future developments highlighted.

Additional keywords

DNA profiling image analysis electrophoresis registration 

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References

  1. Ainsworth, C.C. & P.J. Sharp, 1989. The potential role of DNA probes in plant variety identification.Plant Varieties & Seeds 2: 27–34.Google Scholar
  2. Berg, B. van den, 1997. Horizontal ultrathin-layer multi-zonal electrophoresis of DNA: An efficient tool for large-scale polymerase chain reaction (PCR) fragment analysis.Electrophoresis 18: 2861–2864.PubMedGoogle Scholar
  3. Caetano-Anolles, G. & R.N. Trigiano, 1997. Nucleic acid markers in agricultural biotechnology.AgBiotech News and Information 9: 235N-242N.Google Scholar
  4. Cooke, R.J., 1988. Electrophoresis in plant testing and breeding.Advances in Electrophoresis 2: 171–261.Google Scholar
  5. Cooke, R.J., 1995a. Introduction: The reasons for variety identification. In: C.W. Wrigley (Ed.), Identification of Food Grain Varieties. AACC, USA, pp. 1–18.Google Scholar
  6. Cooke, R.J., 1995b. Varietal identification of crop plants. In: J. Skerritt & R. Appels (Eds), New Diagnostics in Crop Sciences. CAB International, Wallingford, UK, pp. 33–63.Google Scholar
  7. Cooke, R.J., 1995c. Gel electrophoresis for the identification of plant varieties.Journal of Chromatography 698: 281–299.Google Scholar
  8. Cooke, R.J. & J.C. Reeves, 1998. Cultivar identification—a review of new methods. In: A.F. Kelly & R.A.T. George (Eds), Encyclopedia of Seed Production of World Crops. John Wiley & Sons, London (in press).Google Scholar
  9. Demeke, T., D.R. Lynch, L.M. Kawchuk, G.C. Kozub & J.D. Armstrong, 1996. Genetic diversity of potato determined by random amplified polymorphic DNA analysis.Plant Cell Reports 15: 662–667.CrossRefGoogle Scholar
  10. Draper, S.R. & P.D. Keefe, 1989. Machine vision for the characterisation and identification of cultivars.Plant Varieties & Seeds 2: 53–62.Google Scholar
  11. Fowler, J.C.S. & J.M.K. Kijas, 1994. Current molecular methods for plant genome dentification.Australasian Biotechnology 4: 153–157.PubMedGoogle Scholar
  12. Gorg, R., U. Schachtschabel, E. Ritter, F. Salamini & C. Gebhardt, 1992. Discrimination among 136 tetraploid potato varieties by fingerprints using highly polymorphic DNA markers.Crop Science 32: 815–819.Google Scholar
  13. Huaman, Z. & H. Stegemann, 1989. Use of electrophoretic analyses to verify morphologically identical clones in a potato collection.Plant Varieties & Seeds 2: 155–161.Google Scholar
  14. Jensen, K., T. Tygesen, C. Kesmir, I.M. Skovgaard & I. Sondergaard, 1997. Classification of potato varieties using isoelectrophoretic focussing patterns, neural nets and statistical methods.Journal of Agricultural and Food Chemistry 45: 158–161.CrossRefGoogle Scholar
  15. Karp, A., K.J. Edwards, M. Bruford, S. Funk, B. Vosman, M. Morgante, O. Seberg, A. Kremer, P. Boursot, P. Arctander, D. Tautz & G.M. Hewitt, 1997. Molecular technologies for biodiversity evaluation: opportunities and challenges.Nature Biotechnology 15: 625–628.CrossRefPubMedGoogle Scholar
  16. Kawchuk, L.M., D.R. Lynch, J. Thomas, B. Penner, D. Sillito & F. Kulcsar, 1996. Characterization ofSolanum tuberosum simple sequence repeats and application to potato cultivar identification.American Potato Journal 73: 325–335.Google Scholar
  17. Keefe, P.D., 1992. A dedicated wheat grain image analyser.Plant Varieties & Seeds 5: 27–33.Google Scholar
  18. Lagoda, P.J.L., D. Dambier, A. Grapin, C. Lanaud & J.-L. Noyer, 1998. Nonradioactive sequence-tagged microsatellite site analyses: A method transferable to the tropics.Electrophoresis 19: 152–157.CrossRefPubMedGoogle Scholar
  19. Law, J.R., P. Donini, R.M.D. Koebner, J.C. Reeves & R.J. Cooke, 1998a. DNA profiling and plant variety registration. 3: The statistical assessment of distinctness in wheat using amplified fragment length polymorphisms.Euphytica (in press).Google Scholar
  20. Law, J.R., P. Donini, R.M.D. Koebner, J.C. Reeves R.J. & Cooke, 1998b. Temporal flux in the genetic diversity of UK cereal crops.Science (submitted).Google Scholar
  21. Lee, D., J.C. Reeves & R.J. Cooke, 1996a. DNA profiling and plant variety registration: 1. The use of random amplified DNA polymorphisms to discriminate between varieties of oilseed rape.Electrophoresis 17 261–265.PubMedGoogle Scholar
  22. Lee, D., J.C. Reeves & R.J. Cooke, 1996b. DNA profiling and plant variety registration: 2. Restriction fragment length polymorphisms in varieties of oilseed rape.Plant Varieties & Seeds 9: 181–190.Google Scholar
  23. Milbourne, D., R. Meyer, J.E. Bradshaw, E. Baird, N. Bonar, J. Provan, W. Powell & R. Waugh, 1997. Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato.Molecular Breeding 3: 127–136.CrossRefGoogle Scholar
  24. Milbourne, D., R.C. Meyer, A.J. Collins L.D. Ramsay, C. Gebhardt & R. Waugh, 1998. Isolation, characterisation and mapping of simple sequence repeat loci in potato.Molecular and General Genetics 259: 233–245.PubMedGoogle Scholar
  25. Mitchell, S.E., S. Kresovich, C.A. Jester, C.J. Hernandez & A.K. Szewc-McFadden, 1997. Application of multiplex PCR and fluorescence-based, semi-automated allele sizing for genotyping plant genetic resources.Crop Science 37: 617–624.Google Scholar
  26. Morell, M.K., R. Peakall, R. Appels, L.R. Preston & H.L. Lloyd, 1995. DNA profiling techniques for plant variety identification.Australian Journal of Experimental Agriculture 35: 801–819.CrossRefGoogle Scholar
  27. Morgante, M. & A.M. Olivieri, 1993. PCR-amplified microsatellites as markers in plant genetics.The Plant Journal 3: 175–182.CrossRefPubMedGoogle Scholar
  28. Provan, J., W. Powell & R. Waugh, 1996. Microsatellite analysis of relationships within cultivated potato (Solanum tuberosum).Theoretical and Applied Genetics 92: 1078–1084.CrossRefGoogle Scholar
  29. Sapirstein, H.D., 1995. Variety identification by digital image analysis. In: C.W. Wrigley (Ed.), Identification of Food Grain Varieties. AACC, USA, pp. 91–130.Google Scholar
  30. Schneider, K. & D.S. Douches, 1997. Assessment of PCR-based simple sequence repeats to fingerprint North American potato cultivars.American Potato Journal 74: 149–160.Google Scholar
  31. Smith, J.S.C. & O.S. Smith, 1992. Fingerprinting crop varieties.Advances in Agronomy 47: 85–140.Google Scholar
  32. Sosinki, B. & D.S. Douches, 1996. Using PCR-based DNA amplification to fingerprint North American potato cultivars.HortScience 31: 130–133.Google Scholar
  33. Staub, J.E., F.C. Serquen & M. Gupta, 1996. Genetic markers, map construction and their application in plant breeding.HortScience 31: 729–741.Google Scholar
  34. Stegemann, H., 1984. Retrospect on 25 years of cultivar and species identification by protein patterns and prospects on developments. In: S.R. Draper & R.J. Cooke (Eds), Biochemical Tests for Cultivar Identification. Proceedings ISTA Symposium, Cambridge 1983, pp. 20–31.Google Scholar
  35. Stegemann, H. & V. Loeschke, 1976. Index of European Potato Varieties, Mitteilungen der Biologischen Bundesanstalt, 168, Berlin 1976, pp. 1–217.Google Scholar
  36. Vooren, J.G. van de & G.W.A.M. van der Heijden, 1993. Measuring the size of French beans with image analysis.Plant Varieties & Seeds 6: 47–53.Google Scholar
  37. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de, Lee, M. Homes, A. Freijters, J. Pot, J. Peleman, M. Kuiper & M. Zabeau, 1995. AFLP: a new technique for DNA fingerprinting.Nucleic Acids Research 23: 4407–4414.PubMedGoogle Scholar
  38. Warren, D.E., 1997a. Image analysis research at NIAB: chrysanthemum leaf shape.Plant Varieties & Seeds 10: 59–61.Google Scholar
  39. Warren, D.E., 1997b. Automated leaf shape description for variety testing in chrysanthemums. Proceedings IPA97 Conference, Dublin, July 1997.Google Scholar
  40. Weising, K., P. Winter, B. Huttel & G. Kahl, 1998. Microsatellite markers for molecular breeding.Journal of Crop Production 1: 113–143.Google Scholar
  41. Welsh, J. & M. McClelland, 1990. Fingerprinting genomes using PCR with arbitrary primers.Nucleic Acids Research 18: 7213–7218.PubMedGoogle Scholar
  42. Williams, J.G.K., A.R. Kubelik, K.J. Livak, J.A. Rafalski, & S.V. Tingey, 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.Nucleic Acids Research 18: 6531–6535.PubMedGoogle Scholar
  43. Wrigley, C.W. (Ed.), 1995. Identification of Food Grain Varieties, AACC, USA.Google Scholar

Copyright information

© Kluwer Academic Publishers 1999

Authors and Affiliations

  • Robert J. Cooke
    • 1
  1. 1.NIABCambridgeUK

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