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Journal of Biomolecular NMR

, Volume 1, Issue 3, pp 217–236 | Cite as

A relational database for sequence-specific protein NMR data

  • Beverly R. Seavey
  • Elizabeth A. Farr
  • William M. Westler
  • John L. Markley
Research Papers

Summary

A protein NMR database has been designed and is being implemented. The database is intended to contain solution NMR results from proteins and peptides (larger than 12 residues). A relational database format has been chosen that indexes data by: primary journal citation, molecular species, sequence-related and atom-specific assignments, and experimental conditions. At present, all data are entered from the primary refereed literature. Examples are given of sample queries to the database. Possible distribution formats are discussed.

Keywords

Peptides Proteins Experimental conditions NMR spectral parameters Structural, dynamic, kinetic, and thermodynamic results Information retrieval 

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References

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Copyright information

© ESCOM Science Publishers B.V 1991

Authors and Affiliations

  • Beverly R. Seavey
    • 1
    • 2
  • Elizabeth A. Farr
    • 1
    • 2
  • William M. Westler
    • 1
  • John L. Markley
    • 1
    • 2
  1. 1.Biochemistry Department, College of Agricultural and Life SciencesUniversity of Wisconsin-MadisonMadisonUSA
  2. 2.Biochemistry Department, College of Agricultural and Life SciencesUniversity of Wisconsin-MadisonMadisonUSA

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