Rapid molecular characterization of mutations leading to unstable hemoglobin β-chain variants
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Summary
Characterization of unstable hemoglobins by protein analysis is often difficult. However, it is facilitated by DNA analysis, especially in the case of hyperunstable β-chain variants, which produce a β-thalassemia phenotype. We have applied an efficient strategy to the detection of such variants at the DNA level, based on computer-designed denaturing gradient gel electrophoresis (DGGE) of amplified DNA fragments. This approach makes it possible to detect any anomaly in the β-globin gene. We describe the use of the DGGE method for rapid characterization of β-chain variants and report a new missense mutation in the β-globin gene third exon, β 127 CAG-CGG/Gln-Arg, which is responsible for the synthesis of a highly unstable hemoglobin.
Key words
β-globin Unstable hemoglobins Polymerase chain reaction DGGEPreview
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References
- 1.Amselem S, Duquesnoy P, Attree O, Novelli G, Bousnina S, Postel-Vinay M-C, Goossens M (1989) Laron dwarfism and mutations of the growth hormone-receptor gene. N Engl J Med 321: 989–995Google Scholar
- 2.Attree O, Vidaud D, Vidaud M, Amselem S, Lavergne J, Goossens M (1989) Mutations in the catalytic domain of human coagulation factor IX: rapid characterization by direct genomic sequencing of DNA fragments displaying an altered melting behavior. Genomics 4: 266–272Google Scholar
- 3.Basset P, Beuzard Y, Garel MC, Rosa J (1978) Isoelectric focusing of human hemoglobins: its application to screening, to the characterization of 70 variants, and to the study of modified fractions of normal hemoglobins. Blood 51: 971–975Google Scholar
- 4.Baudin-Chich V, Wajcman H, Gombaud-Saintonge G, Arous N, Riou J, Brière J, Galactéros F (1988) Hemoglobin Brest [β 127 (H5) Gln→Lys], a new unstable human hemoglobin variant located at the α 1 β 1 interface with specific electrophoretic behavior. Hemoglobin 12: 179–188Google Scholar
- 5.Beris P, Miescher PA, Diaz-Chico JC, Han IS, Kutlar A, Hu H, Wilson JB, Huisman THJ (1988) Inclusion body β-thalassemia trait in a Swiss family is caused by an abnormal hemoglobin (Geneva) with an altered and extended β-chain carboxy-terminus due to a modification in codon β 114. Blood 72: 801–805Google Scholar
- 6.Carrell RM, Kay R (1972) A simple method for the detection of unstable hemoglobins. Br J Haematol 23: 615–619Google Scholar
- 7.Coleman MB, Steinberg MH, Adams JG III (1990) Hemoglobin Terre-Haute [β 106 (G8) arginine]: a posthumous correction to the original structure of Hb Indianapolis. Blood 76 [Suppl 1]: 57aGoogle Scholar
- 8.Cotton RGH, Campbell RD (1989) Chemical reactivity of matched cytosine and thymine bases near mismatched and unmatched bases in a heteroduplex between DNA strands with multiple differences. Nucleic Acids Res 17: 4223–4233Google Scholar
- 9.Fanen P, Ghanem N, Vidaud M, Besmond C, Martin J, Costes B, Plassa F, Goossens M (1992) Molecular characterization of cystic fibrosis: 16 novel mutations identified by analysis of the whole cystic fibrosis conductance transmembrane regulator (CFTR) coding regions and splice site junctions. Genomics 13: 770–776Google Scholar
- 10.Feinberg AP, Vogelstein B (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6–13Google Scholar
- 11.Fucharoen S, Kobayashi Y, Fucharoen G, Ohba Y, Miyazono K, Fukumaki Y, Takaku F (1990) A single nucleotide deletion in codon 123 of the β-globin gene causes an inclusion body β-thalassemia trait: a novel elongated globin chain β Makabe. Br J Haematol 75: 393–399Google Scholar
- 12.Ghanem N, Girodon E, Vidaud M, Martin J, Fanen P, Plassa F, Goossens M (1992) A comprehensive scanning method for rapid detection of β-globin gene mutations and polymorphisms. Hum Mutation (in press)Google Scholar
- 13.Goossens M, Fanen P, Attree O, Vidaud M (1990) A new strategy for direct detection of β-thalassemia mutations. In Bank A (ed) Sixth Cooley's anemia symposium. Ann NY Acad Sci New York, pp 74–80Google Scholar
- 14.Grompe M, Muzny DM, Caskey CT (1989) Scanning detection of mutations in human ornithine transcarbamoylase by chemical mismatch cleavage. Proc Natl Acad Sci USA 86: 5888–5892Google Scholar
- 15.Gyllensten UB, Erlich HA (1988) Generation of single-strand DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus. Proc Natl Acad Sci USA 85: 7652–7656Google Scholar
- 16.Hall GW, Franklin IM, Sura T, Thein SL (1991) A novel mutation (nonsense β 127) in exon 3 of the β-globin gene produces a variable thalassemic phenotype. Br J Haematol 79: 342–344Google Scholar
- 17.Honig GR, Green D, Shamsuddin M, Vida LN, Mason RG, Gnarra DJ, Maurer HS (1973) Hemoglobin Abraham Lincoln, β32 (B14) Leucine→Proline an unstable variant producing severe hemolytic disease. J Clin Invest 52: 1746–1755Google Scholar
- 18.Huisman THJ, Wilson JB, Kutlar A, Yang KG, Chen S-S, Webber BB, Atlay C, Martinez Villegas A (1986) Hb J-Antakya or α2β265 (E9) Lys→Met in a Turkish family and Hb Complutense or α2β2127 (H5) Gln→Glu in a Spanish family; correction of a previously published identification. Biochim Biophys Acta 871: 229–231Google Scholar
- 19.Jackson JM, Yates A, Huehns ER (1973) Haemoglobin Perth: β 32 (B14) Leu→Pro, an unstable haemoglobin causing haemolysis. Br J Haematol 25: 607–610Google Scholar
- 20.Kobayashi Y, Fukumaki Y, Komatsu N, Ohba Y, Miyaji T, Miura Y (1987) A novel globin structural mutant, Showa-Yakushiji (β 110 Leu-Pro) causing a β-thalassemia phenotype. Blood 70: 1688–1691Google Scholar
- 21.Montandon AJ, Green PM, Giannelli F, Bentley DR (1989) Direct detection of point mutations by mismatch analysis: application to haemophilia B. Nucleic Acids Res 17: 3347–3358Google Scholar
- 22.Myers RM, Maniatis T, Lerman LS (1987) Detection and localization of single base changes by denaturing gradient gel electrophoresis. In: Wu R (ed) Methods in enzymology. Academic, New York, pp 501–527Google Scholar
- 23.Öner R, Öner C, Wilson JB, Tamagnini GP, Ribeiro LML, Huisman THJ (1991) Dominant β-thalassemia trait in a Portuguese family is caused by a deletion of (G) TGGCTGGTGT (G) and an insertion of (G) GGCAG (G) in codons 134, 135, 136 and 137 of the β-globin gene. Br J Haematol 79: 306–310Google Scholar
- 24.Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc Natl Acad Sci USA 86: 2766–2770Google Scholar
- 25.Orita M, Suzuki Y, Sekiya T, Hayashi K (1989) Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics 5: 874–879Google Scholar
- 26.Orkin SH, Kazazian HHJ, Antonarakis SE, Goff SC, Boehm CD, Sexton JP, Waber PG, Giardina PJV (1982) Linkage of β-thalassaemia mutations and β-globin gene polymorphisms with DNA polymorphisms in the human β-globin gene cluster. Nature 296: 627–631Google Scholar
- 27.Park SS, Barneton R, Kim SW, Weatherall DJ, Thein SL (1991) A spontaneous deletion of β33/34 Val in exon 2 of the β-globin gene (Hb Korea) produces the phenotype of dominant β-thalassemia. Br J Haematol 78: 581–582Google Scholar
- 28.Pirastu M, Ristaldi MS, Loudianos G, Murru S, Sciarratta GV, Parodi ML, Leone D, Agosti S, Cao A (1990) Molecular basis of atypical β-thalassemia heterozygotes. In: Bank A (ed) Sixth Cooley's anemia symposium. Ann NY Acad Sci New York, pp 90–97Google Scholar
- 29.Podda A, Galanello R, Maccioni L, Melis MA, Rosatelli C, Perseu L, Cao A (1991) Hemoglobin Cagliari (β 60 [E4] Val→Glu): a novel unstable thalassemic hemoglobinopathy. Blood 77: 371–375Google Scholar
- 30.Ristaldi MS, Pirastu M, Murru S, Casula L, Loudianos G, Cao A, Sciarratta GV, Agosti S, Parodi MI, Leone D, Melesendi C (1990) A spontaneous mutation produced a novel elongated β-globin chain structural variant (Hb Agnana) with a thalassemia-like phenotype. Blood 75: 1378–1380Google Scholar
- 31.Schneider RG, Barwick RC (1978) Measuring relative electrophoretic mobilities of mutant hemoglobins and globin chains. Hemoglobin 2: 417–422Google Scholar
- 32.Sheffield VC, Cox DR, Lerman LS, Myers RM (1989) Attachment of a 40-base-pair G + C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc Natl Acad Sci USA 86: 232–236Google Scholar
- 33.Thein SL, Hesketh C, Taylor P, Temperley IJ, Hutchinson RM, Old JM, Wood WG, Clegg JB, Weatherall DJ (1990) Molecular basis for dominantly inherited inclusion body β-thalassemia. Proc Natl Acad Sci USA 87: 3924–3928Google Scholar
- 34.Thein SL, Best S, Sharpe J, Paul B, Clark DJ, Brown MJ (1991) Hemoglobin Chesterfield (β 28 Leu→Arg) produces the phenotype of inclusion body βthalassemia. Blood 77: 2791–2793Google Scholar
- 35.Vidaud M, Fanen P, Martin J, Ghanem N, Nicolas S, Goossens M (1990) Three point mutations in the CFTR gene in French cystic fibrosis patients: identification by denaturing gradient gel electrophoresis. Hum Genet 85: 446–449Google Scholar