Microchimica Acta

, Volume 89, Issue 1–6, pp 411–421 | Cite as

Computer generation of chemical structures from known fragments

  • Marko Razinger
  • Jure Zupan
  • Marjana Novič
Article

Abstract

The interactive generation of chemical structures from given fragments is described and discussed. It is implemented as a part of our expert system CARBON, based on C-13 NMR spectra. As it is designed, this program can also be a useful tool in the structure elucidation process when information on parts of the structure is obtained by other means (IR, mass and other spectrometries, chemical analysis, other relevant information). The topological characteristics of candidate fragments are first chosen interactively and then the elements are connected in all topologically possible ways. In the following step, the topological building blocks are substituted by chemical structural fragments resulting in a set of all chemical structures consistent with the input information.

Key words

structure generation fragments graph theory 

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. [1]
    S. R. Heller,J. Chem. Inf. Comput. Sci. 1985,25, 224.PubMedGoogle Scholar
  2. [2]
    R. C. Read,Recent Progress in Combinatorics (W. T. Tutte, ed.), Academic Press, New York, 1969, p. 161.Google Scholar
  3. [3]
    N. A. B. Gray,Computer-Assisted Structure Elucidation, Wiley, New York, 1986, Chapt. 10, p. 325.Google Scholar
  4. [4]
    R. E. Carhart, D. H. Smith, N. A. B. Gray, J. G. Nourse, C. Djerassi,J. Org. Chem. 1981,46, 1708.Google Scholar
  5. [5]
    Y. Kudo, S. Sasaki,J. Chem. Inf. Comput. Sci. 1976,16, 43.Google Scholar
  6. [6]
    C. A. Shelley, M. E. Munk,Anal. Chim. Acta 1981,133, 507.Google Scholar
  7. [7]
    A. T. Balaban,J. Chem. Inf. Comput. Sci. 1985,25, 334.Google Scholar
  8. [8]
    F. Harary,Graph Theory, Addison-Wesley, Reading, MA, 1972, pp. 10, 57.Google Scholar
  9. [9]
    R. C. Read,Graph Theory and Its Applications (B. Harris, ed.), Academic Press, New York, 1970, p. 51.Google Scholar
  10. [10]
    M. Razinger, J. R. Chrétien, J. E. Dubois,J. Chem. Inf. Comput. Sci. 1985,25, 23.Google Scholar
  11. [11]
    M. Razinger,Theor. Chim. Acta (Berlin) 1986,70, 365.Google Scholar
  12. [12]
    D. H. Rouvray,Scientific American 1986,255, 36.Google Scholar
  13. [13]
    S. L. Hakimi,J. SIAM 1962,10, 496.Google Scholar
  14. [14]
    S. L. Hakimi,J. SIAM 1963,11, 135.Google Scholar
  15. [15]
    J. Zupan, M. Penca, M. Razinger, B. Barlič, D. Hadži,Anal. Chim. Acta 1980,122, 103.Google Scholar

Copyright information

© Springer-Verlag 1987

Authors and Affiliations

  • Marko Razinger
    • 1
  • Jure Zupan
    • 1
  • Marjana Novič
    • 1
  1. 1.Boris Kidrič Institute of ChemistryLjubljanaJugoslavia

Personalised recommendations