Mammalian Genome

, Volume 4, Issue 6, pp 303–313

A Macintosh program for storage and analysis of experimental genetic mapping data

  • Kenneth F. Manly
Review

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Avner, P., Amar, L., Dandolo, L., and Guénet, J.L. (1988). Genetic analysis of the mouse using interspecific crosses. Trends Genet 4, 18–23.Google Scholar
  2. Bishop, D.T. (1985). The information content of phase-known matings for ordering genetic loci. Genet. Epidemiol. 2, 349–361.Google Scholar
  3. Blank, R.D., Campbell, G.R., Calabro, A., and D'Eustachio, P. (1988). A linkage map of mouse Chromosome 12: Localization of Igh and effects of sex and interference on recombination. Genetics 120, 1073–1083.Google Scholar
  4. Crow, J.F. (1990). Mapping functions. Genetics 125, 669–671.Google Scholar
  5. Fletcher, C., Norman, D.J., Germond, E., and Heintz, N. (1991). A multilocus linkage map of mouse chromosome 8. Genomics 9, 737–741.Google Scholar
  6. Green, E.L. (1981). Genetics and Probability in Animal Breeding Experiments. (New York: Oxford University Press).Google Scholar
  7. Haldane, J.B.S. (1919). The combination of linkage values, and the calculation of distances between the loci of linked factors. J. Genet. 8, 299–309.Google Scholar
  8. Haldane, J.B.S. and Waddington, C.H. (1931). Inbreeding and linkage. Genetics 16, 357–374.Google Scholar
  9. Justice, M.J., Siracusa, L.D., Gilbert, D.J., Heisterkamp, N., Groffen, J., Chada, K., Silan, C.M., Copeland, N.G., and Jenkins, N.A. (1990). A genetic linkage map of mouse chromosome 10: localization of eighteen molecular markers using a single interspecific backcross. Genetics 125, 855–866.Google Scholar
  10. Kosambi, D.D. (1944). The estimation of map distances from recombination values. Ann. Genet. 12, 172–175.Google Scholar
  11. Lander, E.S. and Bostein, D. (1989). Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121, 185–199.Google Scholar
  12. Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., and Newburg, L. (1987). MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174–181.Google Scholar
  13. Lincoln, S.E. and Lander, E.S. (1992). Systematic detection of errors in genetic linkage data. Genomics 14, 604–610.Google Scholar
  14. Manly, K.F. and Elliott, R.W. (1991). Map Manager, a microcomputer program for analysis of data from recombinant inbred strains. Mammalian Genome 1, 123–126.Google Scholar
  15. Morton, N.E. and Andrews, V. (1989). MAP, an expert system for multiple pairwise linkage analysis. Ann. Hum. Genet. 53, 263–269.Google Scholar
  16. Mullins, L.J., Grant, S.G., Stephenson, D.A., and Chapman, V.M. (1988). Multilocus molecular mapping of the mouse X chromosome. Genomics 3, 187–194.Google Scholar
  17. Nadeau, J.H., Herrman, B., Bucan, M., Burkart, D., Crosby, J.L., Erhart, M.A., Kosowsky, M., Kraus, J.P., Michiels, F., Schnattinger, A., Tchetgen, M.-B., Varnum, D., Willison, K., Lehrach, H., and Barlow, D. (1991). Genetic maps of mouse chromosome 17 including 12 new anonymous DNA loci and 25 anchor loci. Genomics 9, 78–89.Google Scholar
  18. Neumann, P.E. (1990). Two-locus linkage analysis using recombinant inbred strains and Bayes' theorem. Genetics 126, 277–284.Google Scholar
  19. Neumann, P.E. (1991). Three-locus linkage analysis using recombinant inbred strains and Bayes' theorem. Genetics 128, 631–638.Google Scholar
  20. Ott, J. (1991). Analysis of Human Genetic Linkage. (Baltimore: The Johns Hopkins University Press).Google Scholar
  21. Pascoe, L. and Morton, N.E. (1987). The use of map functions in multipoint mapping. Am. J. Hum. Genet. 40, 174–183.Google Scholar
  22. Press, W.H., Flannery, B.P., Teukolsky, S.A. and Vetterling, W.T. (1990). Numerical Recipes in Pascal. (Cambridge: Cambridge University Press).Google Scholar
  23. Seldin, M.F., Saunders, A.M., Rochelle, J.M., and Howard, T.A. (1991). A proximal mouse chromosome 9 linkage map that further defines linkage groups homologous with segments of human chromosomes 11, 15, and 19. Genomics 9, 678–685.Google Scholar
  24. Silver, J. (1985). Confidence limits for estimates of gene linkage based on analysis using recombinant inbred strains and backcrosses. J. Hered. 76, 436–440.Google Scholar
  25. Sokal, R.S. and Rohlf, F.J. (1981). Biometry, 2nd ed. (New York: W.H. Freeman and Co.), pp. 735–747.Google Scholar
  26. Speed, T.P., McPeek, M.S., and Evans, S.N. (1992). Robustness of the no-interference model for ordering genetic markers. Proc. Natl. Acad. Sci. USA 89, 3103–3106.Google Scholar
  27. Taylor, B.A. (1989). Recombinant inbred strains. In Genetic Variants and Strains of the Laboratory Mouse, 2nd ed., M.F. Lyon and A.G. Searle, eds. (Oxford: Oxford University Press), pp. 773–796.Google Scholar

Copyright information

© Springer-Verlag New York Inc. 1993

Authors and Affiliations

  • Kenneth F. Manly
    • 1
  1. 1.Department of Molecular and Cellular BiologyRoswell Park Cancer InstituteBuffaloUSA

Personalised recommendations