A novel δ° arising from a frameshift insertion, detected by direct sequencing of enzymatically amplified DNA
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Summary
We describe a novel mutation in the δ globin gene of a compound heterozygote for δ° thalassemia and a deletion type Gγ+(Aγδβ)° thalassemia. The δ gene was amplified using the polymerase chain reaction (PCR), and the amplified material was used in a direct sequencing experiment. The nucleotide sequence of the mutant δ gene showed that the insertion of an extra nucleotide at the third position of codon 91 in the second exon, which gives rise to a premature stop codon at position 94, leads to the silencing of this gene. The presence of the mutation in the carriers of δ-thalassemia in this family was confirmed by dot blot hybridization. A possible model for the insertion of the extra nucleotide is discussed.
Keywords
Polymerase Chain Reaction Nucleotide Internal Medicine Codon Nucleotide SequencePreview
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References
- Boer JE de, Ripley LS (1984) Demonstration of the production of frameshift and base-substitution mutations by quasipalindromic DNA sequences. Proc Natl Acad Sci USA 81:5528–5531Google Scholar
- Bradley TB, Wohl RC, Rieder RF (1967) Hemoglobin Gunn Hill: deletion of five amino acid residues and impaired heme-globin binding. Science 157:1581Google Scholar
- Bunn HF, Forget BG (1986) Hemoglobin: molecular, genetic and clinical aspects. Saunders, PhiladelphiaGoogle Scholar
- Fodde R, Losekoot M, Broek MH van den, Oldenburg M, Rashida N, Schreuder A, Wijnen JT, Giordano P, Nayudu NVS, Meera Khan P, Bernini LF (1988) Prevalence and molecular heterogeneity of alfa+ thalassemia in two tribal populations from Andhra Pradesh, India. Hum Genet 80:157–160Google Scholar
- Kimura A, Tagaki Y (1983) A frameshift addition causes silencing of the δ-globin gene in an old world monkey, an anubis. Nucleic Acids Res 11:2541–2549Google Scholar
- Kimura A, Matsunaga E, Ohta Y, Fujiyoshi T, Matsuo T, Nakamura T, Imamura T, Yanase T, Tagaki Y (1982) Structure of cloned δ-globin genes from a normal subject and a patient with δ-thalassemia; sequence polymorphisms found in the δ-globin gene region of Japanese individuals. Nucleic Acids Res 10:5725–5732Google Scholar
- Losekoot M, Fodde R, Schreuder A, Kuit IS van de, Giordano PC, Gerritsen EJA, Bernini LF (1988) Molecular characterization of a Belgian Gγ+(Aγδβ)°-thalassemia deletion. Genome 30 [Suppl 1]: 215Google Scholar
- Martin SL, Vincent KA, Wilson AC (1983) Rise and fall of the δ-globin gene. J Mol Biol 164:513–528Google Scholar
- Moi P, Paglietti E, Sanna A, Brancati C, Tagarelli A, Galanello R, Cao A, Pirastu M (1988) Delineation of the molecular basis of δ-and normal Hb A2 β-thalassemia. Blood 72:530–533Google Scholar
- Orkin SH, Kazazian HH, Antonarakis SE, Goff SE, Bohem CD (1982) Linkage of β-thalassemia mutations and β-globin gene polymorphisms with DNA polymorphisms in human β-globin gene cluster. Nature 296:627–631Google Scholar
- Pirastu M, Galanello R, Melis MA, Brancati C, Tagarelli A, Cao A, Khan YW (1983) 78-2 in Sardiania. Blood 62:341–345Google Scholar
- Saiki RK, Bugawan TL, Horn GT, Mullis KB, Erlich HA (1986) Analysis of enzymatically amplified β-globin and HLA-DQaDNA with allele-specific oligonucleotide probes. Nature 324:163–166Google Scholar
- Tinoco Jr I, Uhlenbeck OC, Levine MD (1971) Estimation of secondary structure in ribonucleic acids. Nature 230:362–367Google Scholar
- Weatherall DJ, Clegg JB (1981) The thalassemia syndromes, 3rd edn. Blackwell, OxfordGoogle Scholar
- Wong C, Dowling CE, Saiki RK, Higuchi RG, Erlich HA, Kazazian Jr HH (1987) Characterization of β-thalassemia mutations using direct genomic sequencing of amplified single copy DNA. Nature 330:384–386Google Scholar