Fine structure of the 21S ribosomal RNA region on yeast mitochondrial DNA
- 32 Downloads
- 20 Citations
Summary
- 1.
We have determined the physical location of mitochondrial genetic markers in the 21S region of yeast mtDNA by genetic analysis of petite mutants whose mtDNA has been physically mapped on the wild-type mtDNA.
- 2.
The order of loci, determined in this study, is in agreement with the order deduced from recombination analysis and coretention analysis except for the position of ω+: we conclude that ω+ is located between C321 (RIB-1) and E514 (RIB-3).
- 3.
The marker E514 (RIB-3) has been localized on a DNA segment of 3800 bp, and the markers E354, E553 and cs23 (RIB-2) on a DNA segment of 1100 base pairs; both these segments overlap the 21S rRNA cistron. The marker C321 (RIB-1) has been localized within a segment of 240 bp which also overlaps the 21S rRNA cistron, and we infer on the basis of indirect evidence that this marker lies within this cistron.
- 4.
In all our rho+ as well as rho- strains there is a one-to-one correlation between the ω+ phenotype, the ability to transmit the ω+ allele and the presence of a mtDNA segment of about 1000 bp long, located between sequences specifying RIB-3 and sequences corresponding to the loci RIB-1 and RIB-2. This segment may be inserted at this same position into ω- mtDNA by recombination.
- 5.
The role which the different allelic forms of ω may play in the polarity of recombination is discussed.
Keywords
Recombination Genetic Marker Indirect Evidence Physical Location Recombination AnalysisAbbreviations used
- rRNA
ribosomal RNA
- bp
base pairs
- 21S
region, region around the 21S ribosomal RNA cistron on yeast mtDNA
- EthBr
ethidium bromide
- tRNA
transfer RNA
Preview
Unable to display preview. Download preview PDF.
References
- Avner, P.R., Coen, D., Dujon, B., Slonimski, P.P.: Mitochondrial genetics. IV. Allelism and mapping studies of oligomycin resistant mutants in Saccharomyces cerevisiae. Molec. gen. Genet. 125, 9–52 (1973)Google Scholar
- Birky, C.W., Jr.: Mitochondrial genetics in fungi and ciliates. In: Genetics and biogenesis of mitochondria and chloroplasts (Birky, C.W., Jr., Perlman, P.S., Byers, T.J., eds.), pp. 182–224. Colombus, Ohio: Ohio State University Press 1975Google Scholar
- Bolotin, M., Coen, D., Deutsch, J., Dujon, B., Netter, P., Petrochilo, E., Slonismki, P.P.: La recombinaison des mitochondries chez Saccharomyces cerevisiae. Bull. Inst. Pasteur 69, 215–239 (1971)Google Scholar
- Bolotin-Fukuhara, M., Faye, G., Fukuhara, H.: Temperature-sensitive respiratory-deficient mitochondrial mutations: Isolation and genetic mapping. Molec. gen. Genet. 152, 295–305 (1977)Google Scholar
- Bolotin-Fukuhara, M., Fukuhara, H.: Modified recombination and transmission of mitochondrial genetic markers in rho minus mutants of Saccharomyces cerevisiae. Proc. nat. Acad. Sci. (Wash.) 73, 4608–4612 (1976)Google Scholar
- Borst, P., Bos, J.L., Grivell, L.A., Groot, G.S.P., Heyting, C., Moorman, A.F.M., Sanders, J.P.M., Talen, J.L., Van Kreijl, C.F., Van Ommen, G.J.B.: The physical map of yeast mitochondrial DNA anno 1977. In: Mitochondria 1977: Genetics and biogenesis of mitochondria (Bandlow, W., Schweyen, R.J. Wolf, K., Kaudewitz, F., eds.), pp. 213–254. Berlin: DeGruyter 1977Google Scholar
- Bos, J.L., Heyting, C., Borst, P., Arnberg, A.C., Van Bruggen, E.F.J.: An insert in the single gene for the ribosomal RNA in yeast mitochondrial DNA. Nature (Lond.) 275, 336–338 (1978)Google Scholar
- Coen, D., Deutsch, J., Netter, P., Petrochilo, E., Slonimski, P.P.: Mitochondrial genetics. I. Methodology and phenomenology. In: Control of organelle development (Miller, P.L., ed.), pp. 449–496. Cambridge: Cambridge University Press 1969Google Scholar
- Deutsch, J., Dujon, B., Netter, P., Petrochilo, E., Slonimski, P.P., Bolotin-Fukuhara, M., Coen, D.: Mitochondrial genetics. VI. The petite mutation in Saccharomyces cerevisiae: Interrelations between the loss of the rho+ factor and the loss of the drug resistance mitochondrial genetic markers. Genetics 76, 195–219 (1974)Google Scholar
- Dujon, B., Bolotin-Fukuhara, M., Coen, D., Deutsch, J., Netter, P., Slonimski, P.P., Weill, L.: Mitochondrial genetics. XI. Mutations at the mitochondrial locus ω affecting the recombination of mitochondrial genes in Saccharomyces cerevisiae. Molec. gen. Genet. 143, 131–165 (1976)Google Scholar
- Dujon, B., Michel, F.: Genetic and physical characterization of a segment of the mitochondrial DNA involved in the control of genetic recombination. In: The genetic function of mitochondrial DNA (Saccone, C., Kroon, A.M., eds.), pp. 175–184. Amsterdam: North-Holland 1976Google Scholar
- Dujon, B., Slonimski, P.P., Weill, L.: A model for recombination and segregation of mitochondrial genomes in Saccharomyces cerevisiae. Genetics 78, 415–437 (1974)Google Scholar
- Faye, G., Kujawa, C., Fukuhara, H.: Physical and genetic organization of petite and grande yeast mitochondrial DNA. IV. In vivo transcription products of mitochondrial DNA and localization of 23S ribosomal RNA in petite mutants of Saccharomyces cerevisiae. J. molec. Biol. 88, 185–203 (1974)Google Scholar
- Fukuhara, H., Bolotin-Fukuhara, M., Hsu, H.J., Rabinowitz, M.: Deletion mapping of mitochondrial transfer RNA genes in Saccharomyces cerevisiae by means of cytoplasmic petite mutants. Molec. gen. Genet. 145, 7–17 (1976)Google Scholar
- Grivell, L.A., Netter, P., Borst, P., Slonimski, P.P.: Mitochondrial antibiotic resistance in yeast: Ribosomal mutants resistant to chloramphenicol, erythromycin and spiramycin. Biochim. biophys. Acta (Amst.) 312, 358–367 (1973)Google Scholar
- heyting, C., Meijlink, F.C.P.W., Verbeet, M.Ph., Sanders, J.P.M., Borst, P.: Fine structure of the 21S ribosomal RNA region on yeast mitochondrial DNA. I. Construction of the physical map and localization of the cistron for the 21S mitochondrial ribosomal RNA. Molec. gen. Genet. 168, 231–250 (1979a)Google Scholar
- Heyting, C., Sanders, J.P.M.: The physical mapping of some genetic markers in the 21S ribosomal region of the mitochondrial DNA of yeast. In: The genetic function of mitochondrial DNA (Saccone, C., Kroon, A.M., eds.), pp. 273–280. Amsterdam: North-Holland 1976Google Scholar
- Heyting, C., Talen, J.-L., Weijers, P.J., Borst, P.: Fine structure of the 21S ribosomal RNA region on yeast mitochondrial DNA. II. The organization of sequences in petite mitochondrial DNAs carrying genetic markers from the 21S region. Molec. gen. Genet. 168, 251–277 (1979b)Google Scholar
- Howell, N., Hall, R., Linnane, A.W., Lukins, H.B.: Genetic analysis of the polarity alleles in recombinants from mitochondrial genetic crosses. J. Bact. 119, 1063–1065 (1974)Google Scholar
- Howell, N., Trembath, M.K., Linnane, A.W., Lukins, H.B.: Biogenesis of mitochondria. 30. An analysis of polarity of mitochondrial gene recombination and transmission. Molec. gen. Genet. 122, 37–51 (1973)Google Scholar
- Jacq, C., Kujawa, C., Grandchamp, C., Netter, P.: Physical characterisation of the difference between yeast mtDNA alleles 290-1 and 290-2. In: Mitochondria 1977: Genetics and biogenesis of mitochondria (Bandlow, W., Schweyen, R.J., Wolf, K., Kaudewitz, F., eds.), pp. 255–270. Berlin: De Gruyter 1977Google Scholar
- Lazowska, J., Jacq, C., Cebrat, S., Slonimski, P.P.: Fine-structure map constructed by electron microscopy and restriction endonucleases of the mitochondrial DNA segment conferring erythromycin resistance. In: The genetic function of mitochondrial DNA (Saccone, C., Kroon, A.M., eds.), pp. 325–336. Amsterdam: North-Holland 1976Google Scholar
- Locker, J., Rabinowitz, M.: Electron microscopic analysis of mitochondrial DNA sequences from petite and grande yeast. In: The genetic function of mitochondrial DNA (Saccone, C., Kroon, A.M., eds.), pp. 313–324. Amsterdam: North-Holland (1976)Google Scholar
- Lukins, H.B., English, J.T., Spithill, T.W., Devenish, R.J., Hall, R.M., Nagley, P., Linnane, A.W.: Biochemical characterisation of a temperature conditional mutant having a mutation in the ω-controlled region of the yeast mitochondrial genome and effects of the mutation on mitochondrial recombination. In: Mitochondria 1977: Genetics and biogenesis of mitochondria (Bandlow, W., Schweyen, R.J., Wolf, K., Kaudewitz, F. eds.), pp. 107–122 Berlin De Gruyter 1977Google Scholar
- Mason, T.: The use of double mutant strains in studies of mitochondrial biogenesis. In: Genetics and biogenesis of chloroplasts and mitochondria (Bücher, Th., Neupert, W., Sebald, W., Werner, S., eds.), pp. 239–246. Amsterdam: North-Holland 1976Google Scholar
- Monnerot, M., Schweyen, R.J., Fukuhara, H.: Mapping of mutation tsm-8 with respect to transfer RNA genes on the mitochondrial DNA of Saccharomyces cerevisiae. Molec. gen. Genet. 152, 307–309 (1977)Google Scholar
- Netter, P., Petrochilo, E., Slonimski, P.P., Bolotin-Fukuhara, M., Coen, D., Deutsch, J., Dujon, B.: Mitochondrial genetics. VII. Allelism and mapping studies of ribosomal mutants resistant to chloramphenicol erythromycin and spiramycin in Saccharomyces cerevisiae. Genetics 78, 1063–1100 (1974)Google Scholar
- Perlman, Ph.S., Birky, C.W., Jr.: Mitochondrial genetics in bakers' yeast: A molecular mechanism for recombinational polarity and suppressiveness. Proc. nat. Acad. Sci. (Wash.) 71 4612–4616 (1974)Google Scholar
- Prunell, A., Bernardi, G.: The mitochondrial genome of wild-type yeast cells. VI. Genome organisation. J. molec. Biol. 110, 53–74 (1977)Google Scholar
- Saccone, C., Kroon, A.M.: Concluding remarks. In: The genetic function of mitochondrial DNA (Saccone, C., Kroon, A.M., eds.), pp. 343–347. Amsterdam: North-Holland 1976Google Scholar
- Sanders, J.P.M., Heyting, C., Borst, P.: The organization of genes in yeast mitochondrial DNA. I. The genes for large and small ribosomal RNA are far apart. Biochem. biophys. Res. Commun. 65, 699–707 (1975)Google Scholar
- Sanders, J.P.M., Heyting, C., DiFranco, A., Borst, P., Slonimski, P.P.: The organization of genes in yeast mitochondrial DNA. In: The genetic function of mitochondrial DNA (Saccone, C., Kroon, A.M., eds.), pp. 259–272. Amsterdam: North-Holland 1976Google Scholar
- Sanders, J.P.M., Heyting, C., Verbeet, M.Ph., Meijlink, F.C.P.W., Borst, P.: The organization of genes in yeast mitochondrial DNA. III. Comparison of the physical maps of the mitochondrial DNAs from three wild-type Saccharomyces strains. Molec. gen. Genet. 157, 239–261 (1977)Google Scholar
- Schweyen, R.J., Kaudewitz, F.: On the formation of rho- petites in yeast. I. Multifactorial crosses involving a mutation conferring temperature sensitivity of rho factor stability. Molec. gen. Genet. 149, 311–322 (1976)Google Scholar
- Schweyen, R.J., Steyrer, U., Kaudewitz, F., Dujon, B., Slonimski, P.P.: Mapping of mitochondrial genes in Saccharomyces cerevisiae: Population and pedigree analysis of retention and loss of four genetic markers on rho- cells. Molec. gen. Genet. 146, 131–165 (1976a)Google Scholar
- Schweyen, R.J., Weiss-Brummer, B., Backhaus, B., Kaudewitz, F.: Localisation of seven gene loci on a circular map of the mitochondrial genome of Saccharomyces cerevisiae. In: The genetic function of mitochondrial DNA (Saccone, C., Kroon, A.M., eds.), pp. 251–258. Amsterdam: North-Holland 1976bGoogle Scholar
- Schweyer, R.J., Weiss-Brummer, B., Backhaus, B., Kaudewitz, F.: The genetic map of the mitochondrial genome in yeast. Map positions of drugr and mit- markers as revealed from population analyses of rho- clones in Saccharomyces cerevisiae. Molec. gen. Genet. 159, 151–160 (1978)Google Scholar
- Slonimski, P.P., Tzagoloff, A.: Localisation in yeast mitochondrial DNA of mutations expressed in a deficiency of cytochrome oxidase and/or coenzyme QH2-cytochrome c reductase. Europ. J. Biochem. 61, 27–41 (1976)Google Scholar
- Southern, E.M.: Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. molec. Biol. 98, 503–517 (1975)Google Scholar
- Sriprakash, K.S., Molloy, P.L., Nagley, P., Lukins, H.B., Linnane, A.W.: Biogenesis of mitochondria. XLI. Physical mapping of mitochondrial genetic markers in yeast. J. molec. Biol. 104, 485–503 (1976)Google Scholar
- Trembath, M.K., Bunn, C.L., Lukins, H.B., Linnane, A.W.: Biogenesis of mitochondria, 27. Genetic and biochemical characterisation of cytoplasmic and nuclear mutations to spiramycin resistance in Saccharomyces cerevisiae. Molec. gen. Genet. 121, 35–48 (1973)Google Scholar
- Van Ommen, G.J.B., Groot, G.S.P., Borst, P.: Fine-structure mapping of 4S RNA genes on mitochondrial DNA of Saccharomyces cerevisiae. Molec. gen. Genet. 154, 255–262 (1977)Google Scholar
- Wolf, K., Dujon, B., Slonimski, P.P.: Mitochondrial genetics. V. Multifactorial crosses involving a mutation conferring paromomycin resistance in Saccharomyces cerevisiae. Molec. gen. Genet. 125, 53–90 (1973)Google Scholar
- Zimmermann, F.K., Vig, B.K.: Mutagen specificity in the induction of mitotic crossing-over in Saccharomyces cerevisiae. Molec. gen. Genet. 139, 255–268 (1975)Google Scholar