In vitro transcription of the ribosomal RNA genes of E. coli DNA
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Summary
Bacterial ribosomal RNA synthesis was studied in an in vitro system in which the presence of heparin prevented reinitiation of transcription. The number of heparin-resistant binary complexes of RNA-polymerase and E. coli DNA depended strongly on the quality of the template. High-molecular weight DNA was a much superior template than DNA prepared by conventional techniques. Using this highmolecular weight DNA as template the amount of ribosomal RNA synthetized in one round of transcription was found to be 4–5 fold higher than the amount of rDNA present. Controls have shown that the transcription probably started at the proper initiation sites and no significant read-through form distant promoters contributed to this effect. If the binary polymerase-DNA complexes were dissociated in the presence of 0.5 M KC1 prior to transcription all RNA synthesis was strongly reduced but the proportion of rRNA increased in the transcript. However, in this case the amount of rRNA did not exceed the amount of rDNA. We propose that the promoters of the rRNA genes are complex structures, able to store 4–5 molecules of RNA polymerase and of these several polymerase only one is bound in an extremely salt-resistent form.
Keywords
Heparin Initiation Site Conventional Technique Binary Complex Distant PromoterPreview
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References
- Baker, R., Yanofsky, C.: Transcription initiation frequency and translational yield for the tryptophan operon of E. coli. J. molec. Biol. 69, 89–102 (1972)Google Scholar
- Beckmann, J.S., Daniel, V.: Relative stabilities of RNA/DNA hybrids: Effect of chain length in competitive hybridization. J. molec. Biol. 89, 355–362 (1974)Google Scholar
- Botchan, P., Wang, J.C., Echols, H.: Effect of circularity and superhelicity on transcription from bacteriophage λ DNA. Proc. nat. Acad. Sci. (Wash.) 70, 3077–3081 (1973)Google Scholar
- Burgess, R., Travers, A.A.: In: Procedures in nucleic acid research (Cantoni, G.L. and Davies, D.R. eds.), pp. 851–863. New York: Haper and Row 1971Google Scholar
- Donini, P.: Turnover of ribosomal RNA during the stringent response in E. coli. J. molec. Biol. 72, 553–569 (1972)Google Scholar
- Ginsburg, D., Steitz, J.A.: The 30 S ribosomal precursor RNA from E. coli. J. biol. Chem. 250, 5647–5654 (1975)Google Scholar
- Gross-Bellard, M., Oudet, P., Chambon, P.: Isolation of high-molecular weight DNA from mammalian cells. Europ. J. Biochem. 36, 32–38 (1973)Google Scholar
- Haseltine, W.A.: In vitro transcription of E. coli RNA genes. Nature (Lond.) 235, 329–333 (1972)Google Scholar
- Hussey, C., Pero, J., Shorenstein, R.G., Losick, R.: In vitro synthesis of ribosomal RNA by Bacillus subtilis RNA polymerase. Proc. nat. Acad. Sci. (Wash.) 69, 407–411 (1972)Google Scholar
- Lazzarini, R.A., Johnson, L.D.: Regulation of ribosomal RNA synthesis in cold-shocked E. coli. Nature (Lond.) 243, 17–19 (1973)Google Scholar
- Marmur, J.: A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. molec. Biol. 3, 208–218 (1961)Google Scholar
- Miller, O.L., Jr., Hamkalo, B.A.: Visualization of RNA synthesis on chromosomes. Int. Rev. Cytol. 33, 1–25 (1972)Google Scholar
- Nüsslein, C., Heyden, B.: Chromatography of RNA polymerase from E. coli on single-stranded DNA-agarose column. Biochem. biophys. Res. Commun. 47, 282–286 (1972)Google Scholar
- Pettijohn, D.E.: Ordered and preferential initiation of ribosomal RNA synthesis in vitro. Nature (Lond.) 235, 204–206 (1972)Google Scholar
- Pettijohn, D.E., Clarkson, K., Kossman, C.R., Stonington, O.G.: Synthesis of ribosomal RNA on a protein-DNA complex isolated from bacteria: a comparison of ribosomal RNA synthesis in vitro and in vivo. J. molec. Biol. 52, 281–300 (1970)Google Scholar
- Richardson, J.P.: Initiation of transcription by E. coli RNA polymerase from supercoiled and nonsupercoiled bacteriophage PM2 DNA. J. molec. Biol. 91, 477–487 (1975)Google Scholar
- Schäfer, R., Zillig, W., Zechel, K., Janekovich, D., Kruck, J.: A model for the initiation of transcription by DNA-dependent RNA polymerase. Europ. J. Biochem. 33, 207–214 (1973)Google Scholar
- Spadari, S., Ritossa, F.: Clustered genes for ribosomal Ribonucleic acids in E. coli. J. molec. Biol. 53, 357–367 (1970)Google Scholar
- Torriani, A.: In: Procedures in nucleic acid research (Cantoni, G.L. and Davies, D.R. eds.) pp. 224–235. New York: Harper and Row 1966Google Scholar
- Traub, P., Mizushima, S., Lowry, C.V., Nomura, M.: In: Methods in enzymology, Vol. XX. Colowick, S.P. and Kaplan, N.O. (eds.), pp. 390–405. New York: Acad. Press 1971Google Scholar
- Travers, A.: Multiple modes of ribosomal RNA transcription. Cell 8, 605–609 (1976)Google Scholar
- Travers, A., Baillie, D.D., Peoersen, S.: The effect of DNA conformation on ribosomal RNA synthesis in vitro. Nature (Lond.) New Biol. 243, 161–163 (1973)Google Scholar
- Travers, A., Kamen, R.I., Schleif, R.F.: Factor necessary for ribosomal RNA synthesis. Nature (Lond.) 228, 748–751 (1970)Google Scholar
- Udvardy, A., Sümegi, J., Venetianer, P.: Tight binding of RNA polymerase to rDNA genes in E. coli. Nature (Lond.) 249, 548–550 (1974)Google Scholar
- Venetianer, P., Sümegi, J., Udvardy, A.: In: Control of ribosome synthesis (Maaloe, O. and Kjeldgaard, N.O. eds.), pp. 252–267. Copenhagen: Munksgaard 1976Google Scholar
- Willmund, R., Kneser, H.: Different binding of RNA polymerase to individual promoters. Molec. gen. Genet. 126, 165–175 (1973)Google Scholar