Skip to main content
Log in

Sequential backbone assignment of isotopically enriched proteins in D2O by deuterium-decoupled HA(CA)N and HA(CACO)N

  • Research Papers
  • Published:
Journal of Biomolecular NMR Aims and scope Submit manuscript

Summary

It is demonstrated that sequential resonance assignment of the backbone 1Hα and 15N resonances of proteins can be obtained without recourse to the backbone amide protons, an approach which should be useful for assignment of regions with rapidly exchanging backbone amide protons and for proteins rich in proline residues. The method relies on the combined use of two 2D experiments, HA(CA)N and HA(CACO)N or their 3D analogs, which correlate 1Hα with the intraresidue 15N and with the 15N resonance of the next residue. The experiments are preferably conducted in D2O, where very high resolution in the 15N dimension can be achieved by using 2H decoupling. The approach is demonstrated for a sample of human ubiquitin, uniformly enriched in 13C and 15N. Complete backbone and 13Cβ/1Hβ resonance assignments are presented.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Abragam, A. (1961) Principles of Nuclear Magnetism, Oxford University Press, Oxford, pp. 309, 501.

    Google Scholar 

  • Bax, A. and Subramanian, S. (1986) J. Magn. Reson., 67, 565–569.

    Google Scholar 

  • Burum, D.P. and Ernst, R.R. (1980) J. Magn. Reson., 39, 163–168.

    Google Scholar 

  • Delaglio, F., Torchia, D.A. and Bax, A. (1991) J. Biomol. NMR, 1, 439–446.

    Google Scholar 

  • DiStefano, D.L. and Wand, A.J. (1987) Biochemistry, 26, 7272–7281.

    Google Scholar 

  • Freeman, R. (1988) A Handbook of Nuclear Magnetic Resonance, Longman, New York, NY, pp. 14–16.

    Google Scholar 

  • Garrett, D.S., Powers, R., Gronenborn, A.M. and Clore, G.M. (1991) J. Magn. Reson., 95, 214–220.

    Google Scholar 

  • Grzesiek, S. and Bax, A. (1992a) J. Am. Chem. Soc., 114, 6291–6293.

    Google Scholar 

  • Grzesiek, S. and Bax, A. (1992b) J. Magn. Reson., 96, 201–207.

    Google Scholar 

  • Grzesiek, S. and Bax, A. (1992c) J. Magn. Reson., 96, 432–440.

    Google Scholar 

  • Grzesiek, S. and Bax, A. (1993) J. Magn. Reson. Ser. B, 102, 103–106.

    Google Scholar 

  • Ikura, M., Kay, L.E. and Bax, A. (1990) Biochemistry, 29, 4659–4667.

    Google Scholar 

  • Kay, L.E., Ikura, M., Tschudin, R. and Bax, A. (1990) J. Magn. Reson., 89, 496–514.

    Google Scholar 

  • Live, D.H., Davis, D.G., Agosta, W.C. and Cowburn, D. (1984) J. Am. Chem. Soc., 106, 1939–1941.

    Google Scholar 

  • Madsen, J.C., Sørensen, O.W., Sørensen, P. and Poulsen, F.M. (1993) J. Biomol. NMR, 3, 239–244.

    Google Scholar 

  • Marion, D., Ikura, M., Tschudin, R. and Bax, A. (1989) J. Magn. Reson., 85, 393–399.

    Google Scholar 

  • McCoy, M.A. and Mueller, L. (1992) J. Magn. Reson., 99, 18–36.

    Google Scholar 

  • Morris, G.A. and Freeman, R. (1979) J. Am. Chem. Soc., 101, 760–762.

    Google Scholar 

  • Palmer, A.G., Fairbrother, W.J., Cavanagh, J., Wright, P.E. and Rance, M. (1992) J. Biomol. NMR, 2, 103–108.

    Google Scholar 

  • Pople, J.A. (1958) Mol. Phys., 1, 168–174.

    Google Scholar 

  • Powers, R., Gronenborn, A.M., Clore, G.M. and Bax, A. (1991) J. Magn. Reson. 94, 209–213.

    Google Scholar 

  • Schneider, D.M., Dellwo, M.J. and Wand, A.J. (1992) Biochemistry, 31, 3645–3652.

    Google Scholar 

  • Shaka, A.J., Barker, P.B. and Freeman, R. (1985) J. Magn. Reson., 53, 313–340.

    Google Scholar 

  • Shaka, A.J., Barker, P.B. and Freeman, R. (1985) J. Magn. Reson., 64, 547–552.

    Google Scholar 

  • Vuister, G.W. and Bax, A. (1992) J. Magn. Reson., 98, 428–435.

    Google Scholar 

  • Wang, A.C., Lodi, P.J., Qin, J., Vuister, G.W., Gronenborn, A.M. and Clore, G.M. (1994) J. Magn. Reson. Ser. B., 105, 196–198.

    Google Scholar 

  • Weber, P.L., Brown, S.C. and Mueller, L. (1987) Biochemistry, 26, 7282–7290.

    Google Scholar 

  • Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York, NY.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wang, A.C., Grzesiek, S., Tschudin, R. et al. Sequential backbone assignment of isotopically enriched proteins in D2O by deuterium-decoupled HA(CA)N and HA(CACO)N. J Biomol NMR 5, 376–382 (1995). https://doi.org/10.1007/BF00182281

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00182281

Keywords

Navigation