Structure and expression of LeMA-1, a tomato protein belonging to the SEC18-PAS1-CDC48-TBP-1 protein family of putative Mg2+-dependent ATPases
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Abstract
cDNA clones of a tomato protein, called Lycopersicum esculentum putative Mg2+-dependent ATPase (LeMA-1), were isolated from a cDNA library. Sequence comparison of the tomato protein with other genes in the database revealed that the protein is highly homologous to a human protein called TBP-1 and a yeast Tat-binding-analogue protein YTA1A. All three proteins belong to the recently discovered protein family of putative Mg2+-dependent ATPases and form within this family a subgroup of proteins involved in controlled protein degradation and possibly also in transcriptional regulation. Expression of the mRNA of LeMA-1 could be monitored in several plant tissues. LeMA-1 is the first member of this subgroup of proteins isolated from plants.
Key words
multicatalytic proteinase 26S protease proteasome seed germinationPreview
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References
- 1.Altschul SF, Gish W, Miller W, Meyers EW, Lipman DJ: Basic local alignment research tool. J Mol Biol 215: 403–410 (1990).PubMedGoogle Scholar
- 2.Dubiel W, Ferrell K, Pratt G, Rechsteiner M: Subunit 4 of the 26S protease is a member of a novel eukaryotic ATPase family. J Biol Chem 267: 22699–22702 (1992).PubMedGoogle Scholar
- 3.Dubiel W, Ferrell K, Rechsteiner M: Peptide sequencing identifies MSS1, a modulator of HIV-Tat-mediated transactivation, as subunit 7 of the 26S protease. FEBS Lett 323: 276–278 (1993).CrossRefPubMedGoogle Scholar
- 4.Erdmann R, Wiebel FF, Flessau A, Rytka J, Beyer A, Frölich KU, Kunau WH: PAS1, a yeast gene required for peroxisome biogenesis, encodes a member of a novel family of putative ATPases. Cell 64: 499–510 (1991).CrossRefPubMedGoogle Scholar
- 5.Frölich K-U, Fries H-W, Rüdiger M, Erdmann R, Botstein D, Mecke D: Yeast cell cycle protein CDC48p shows full-length homology to the mammalian protein VCP and is a member of a protein family involved in secretion, peroxisome formation and gene expression. J Cell Biol 114: 443–453 (1990).CrossRefGoogle Scholar
- 6.Früh K, Gossen M, Wang K, Bujard H, Peterson PA, Yang Y: Displacement of housekeeping proteasome subunits by MHC-encoded LMPs: a newly discovered mechanism for modulating the multicatalytic proteinase complex. EMBO J 13: 3236–3244 (1994).PubMedGoogle Scholar
- 7.Genschik P, Jamet E, Philipps G, Parmentier Y, Gigot C, Fleck J: Molecular characterization of a β type proteasome subunit from Arabidopsis thaliana co-expressed at a high level with an α-type proteasome subunit early in the cell-cycle. Plant J 6: 537–546 (1994).CrossRefPubMedGoogle Scholar
- 8.Ghislain M, Udvardy A, Mann C: S. cerevisiae 26S protease mutants arrest cell division in G2/metaphase. Nature 366: 358–362 (1993).CrossRefPubMedGoogle Scholar
- 9.Goldberg AL: The mechanisms and functions of ATP-dependent proteases in bacterial and animal cells. Eur J Biochem 203: 9–23 (1992).PubMedGoogle Scholar
- 10.Gordon C, McGurk G, Dillon P, Rosen C, Hastie ND: Defective mitosis due to a mutation in the gene for fission yeast 26S protease subunit. Nature 366: 355–357 (1993).CrossRefPubMedGoogle Scholar
- 11.Goyer C, Lee HS, Malo D, Sonenberg N: Isolation of a yeast gene encoding a protein homologous to the human Tat-binding protein TBP-1. DNA Cell Biol 11: 579–585 (1992).PubMedGoogle Scholar
- 12.Kozak M: Structural features in eukaryotic mRNAs that modulate the initiation of translation. J Biol Chem 266: 19867–19887 (1991).PubMedGoogle Scholar
- 13.Lütcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA: Selection of AUG initiation codons differs in plants and animals. EMBO J 6: 43–48 (1987).PubMedGoogle Scholar
- 14.Lazarus CM: Gibberellin: coordinate and non coordinate gene expression. In: Grierson D (ed) Developmental Regulation of Plant Gene Expression, pp. 48–60. Blackie, Glasgow/London (1991).Google Scholar
- 15.Nelbock P, Dillon PJ, Perkins A, Rosen CA: A cDNA for a protein that interacts with the human immunodeficiency virus Tat transactivator. Science 248: 1650–1653 (1990).PubMedGoogle Scholar
- 16.Ohana B, Moore PA, Ruben SM, Southgate CD, Green MR, Rosen CA: The type 1 human immunodeficiency virus Tat binding protein is a transcriptional activator belonging to an additional family of evolutionarily conserved genes. Proc Natl Acad Sci USA 90: 138–142 (1993).PubMedGoogle Scholar
- 17.Peters J-M, Walsh MJ, Franke WW: An abundant and ubiquitous homo-oligomeric ring-shaped ATPase particle related to the putative vesicle fusion proteins Sec18p and NSF. EMBO J 9: 1757–1767 (1990).PubMedGoogle Scholar
- 18.Rechsteiner M, Hoffmann L, Dubiel W: Multicatalytic and 26S proteases. J Biol Chem 268: 6065–6068 (1993).PubMedGoogle Scholar
- 19.Rivett AJ: Proteasomes: multicatalytic proteinase complexes. Biochem J 291: 1–10 (1993).PubMedGoogle Scholar
- 20.Rivett AJ, Knecht E: Proteasome location. Curr Biol 3: 127–129 (1993).CrossRefPubMedGoogle Scholar
- 21.Saghai-Maroof MA, Solimann KM, Jorgensen RA, Allard RW: Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81: 8014–8018 (1984).PubMedGoogle Scholar
- 22.Saira Mian I: Sequence similarities between cell regulation factors, heat shock proteins and RNA helicases. Trends Biochem Sci 37: 125–127 (1993).Google Scholar
- 23.Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1989).Google Scholar
- 24.Schnall R, Mannhaupt G, Stucka R, Tauer R, Ehnle S, Schwartzlose S, Vetter I, Feldmann H: Identification of a set of yeast genes coding for a novel family of putative ATPases with high similarity to constituents of the 26S protease complex. Yeast 10: 1141–1155 (1994).PubMedGoogle Scholar
- 25.Shanklin J, Jabben M, Viestra RD: Red light induced formation of ubiquitin-phytochrome conjugates. Proc Natl Acad Sci USA 84: 359–363 (1987).Google Scholar
- 26.Shaw DR, Enis HL: Molecular cloning and developmental regulation of Dictyostelium discoideum homologues of the human and yeast HIV1 Tat-binding protein. Biochem Biophys Res Comm 193: 1291–1296 (1993).CrossRefPubMedGoogle Scholar
- 27.Shibuya H, Irie K, Ninomiya-Tsuji J, Goebl M, Taniguchi T, Matsumoto K: New human gene encoding a positive modulator of HIV Tat-mediated transactivation. Nature 357: 700–702 (1992).CrossRefPubMedGoogle Scholar
- 28.Swaffield JC, Bromberg JF, Johnston SA: Alterations in a yeast protein resembling HIV Tat-binding protein relieve requirement for an acidic activation domain in GAL4. Nature 357: 698–700 (1992).CrossRefPubMedGoogle Scholar
- 29.Tabler M, Sänger HL: Infectivity studies on different potato spindle tuber viroid (PSTV) RNAs synthesized in vitro with the SP6 transcription system. EMBO J 4: 2191–2199 (1985).Google Scholar
- 30.Tabler M, Günther I, Kern R, Sänger HL: A microscale procedure for isolating and sequencing the viroid RNA present in one gram of infected leaf tissue. J Virol Meth 23: 111–126 (1989).CrossRefGoogle Scholar
- 31.Viestra RD: Protein degradation in plants. Annu Rev Plant Physiol Plant Mol Biol 44: 385–410 (1993).CrossRefGoogle Scholar
- 32.Vinson CR, LaMarco KL, Johnson PF, Landschulz WH, McKnight SL: In situ detection of sequence specific DNA binding activity specified by a recombinant bacteriophage. Genes Devel Dev 2: 801–806 (1988).Google Scholar