Plant Molecular Biology

, Volume 27, Issue 4, pp 715–727 | Cite as

The Pisum sativum TubA1 gene, a member of a small family of α-tubulin sequences

  • Heidi L. Brierley
  • Philippa Webster
  • Sharon R. Long
Research Article

Abstract

α- and β-tubulin proteins are subunits of microtubules, which as primary elements of the plant cytoskeleton play major roles in plant cell division and cell morphogenesis. Several higher-plant α- and β-tubulin gene families have been reported to have at least six to nine members each. Using genomic Southern hybridizations and polymerase chain reaction (PCR) experiments, we have found that the Pisum sativum (garden pea) genome has only four copies of α-tubulin sequences and a similar number of β-tubulin sequences. We have characterized the pea α-tubulin gene TubA1. Its nucleotide sequence predicts a 452 amino acid product which is 89–98% identical to those predicted for other plant α-tubulins. By S1 nuclease analysis we have located the transcript start site at 102 bases upstream of the ATG. We have also shown that the TubA1 gene is expressed by northern hybridization with a gene-specific probe.

Key words

pea Pisum sativum tubulin 

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. 1.
    Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K: Current Protocols in Molecular Biology. John Wiley, New York (1987).Google Scholar
  2. 2.
    BoehringerMannheim: The Genius System User's Guide for Filter Hybridization. Boehringer Mannheim, Indianapolis, IN (1992).Google Scholar
  3. 3.
    Brierley HL: Alpha-tubulin gene structure and expression in Pisum sativum. PhD dissertation, Stanford University (1994).Google Scholar
  4. 4.
    Brunke KJ, Young EE, Buchbinder BU, Weeks DP: Coordinate regulation of the four tubulin genes of Chlamydomonas reinhardtii. Nucl Acids Res 10: 1295–1310 (1982).PubMedGoogle Scholar
  5. 5.
    Calzone FJ, Britten RJ, Davidson EH: Mapping of gene transcripts by nuclease protection assays and cDNA primer extension. Meth Enzymol 152: 611–632 (1987).PubMedGoogle Scholar
  6. 6.
    Carpenter JL, Ploense SE, Snustad DP, Silflow CD: Preferential expression of an α-tubulin gene of Arabidopsis in pollen. Plant Cell 4: 557–571 (1992).CrossRefPubMedGoogle Scholar
  7. 7.
    Chen J, Greenblatt IM, Dellaporta SL: Molecular analysis of Ac transposition and DNA replication. Genetics 130: 665–676 (1992).PubMedGoogle Scholar
  8. 8.
    Church GM, Gilbert W: Genomic sequencing. Proc Natl Acad Sci USA 81: 1991–1995 (1984).PubMedGoogle Scholar
  9. 9.
    Cowan NJ, Wilde CD, Chow LT, Wefald FC: Structural variation among human β-tubulin genes. Proc Natl Acad Sci USA 78: 4877–4881 (1981).PubMedGoogle Scholar
  10. 10.
    Creelman RA, Mullet JE: Water deficit modulates gene expression in growing zones of soybean seedlings. Analysis of differentially expressed cDNAs, a new β-tubulin gene, and expression of genes encoding cell wall proteins. Plant Mol Biol 17: 591–608 (1991).PubMedGoogle Scholar
  11. 11.
    Czarnecka E, Gurley WB, Nagao RT, Mosquera LA, Key JL: DNA sequence and transcript mapping of a soybean gene encoding a small heat shock protein. Proc Natl Acad Sci USA 82: 3726–3730 (1985).Google Scholar
  12. 12.
    Dean C, Tamaki S, Dunsmuir P, Favreau M, Katayama C, Dooner H, Bedbrook J: mRNA transcripts of several plant genes are polyadenylated at multiple sites in vivo. Nucl Acids Res 14: 2229–2240 (1986).PubMedGoogle Scholar
  13. 13.
    Fosket DE, Morejohn LC: Structural and functional organization of tubulin. Annu Rev Plant Physiol Plant Mol Biol 43: 201–240 (1992).Google Scholar
  14. 14.
    Guiltinan MJ, Ma D-P, Barker RF, Bustos MM, Cyr RJ, Yadegari R, Fosket DE: The isolation, characterization and sequence of two divergent β-tubulin genes from soybean (Glycine max L.). Plant Mol Biol 10: 171–184 (1987).Google Scholar
  15. 15.
    Han I-S, Jongewaard I, Fosket DE: Limited expression of a diverged β-tubulin gene during soybean (Glycine max [L] Merr.) development. Plant Mol Biol 16: 225–234 (1991).PubMedGoogle Scholar
  16. 16.
    Hussey PJ, Haas N, Hunsperger J, Larkin J, Snustad DP, Silflow CD: The β-tubulin gene family in Zea mays: two differentially expressed β-tubulin genes. Plant Mol Biol 15: 957–972 (1990).PubMedGoogle Scholar
  17. 17.
    Innis MA, Gelfand DH, Sninsky JJ, White TJ: PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego (1990).Google Scholar
  18. 18.
    Joshi CP: An inspection of the domain between putative TATA box and translation start site in 79 plant genes. Nucl Acids Res 15: 6643–6653 (1987).PubMedGoogle Scholar
  19. 19.
    Kopczak SD, Haas NA, Hussey PJ, Silflow CD, Snustad DP: The small genome of Arabidopsis contains at least six expressed α-tubulin genes. Plant Cell 4: 539–547 (1992).CrossRefPubMedGoogle Scholar
  20. 20.
    Lee MG-S, Lewis SA, Wilde CD, Cowan NJ: Evolutionary history of a multigene family: an expressed human β-tubulin gene and three processed pseudogenes. Cell 33: 477–487 (1983).CrossRefPubMedGoogle Scholar
  21. 21.
    Lemischka I, Sharp PA: The sequences of an expressed rat α-tubulin gene and a pseudogene with an inserted repetitive element. Nature 300: 330–335 (1982).PubMedGoogle Scholar
  22. 22.
    Liaud M-F, Brinkmann H, Cerff R: The β-tubulin gene family of pea: primary structures, genomic organization and intron-dependent evolution of genes. Plant Mol Biol 18: 639–651 (1992).Google Scholar
  23. 23.
    Lloyd CW: The plant cytoskeleton: the impact of fluorescence microscopy. Annu Rev Plant Physiol 38: 119–139 (1987).Google Scholar
  24. 24.
    Ludwig SR, Oppenheimer DG, Silflow CD, Snustad DP: Characterization of the α-tubulin gene family of Arabidopsis thaliana. Proc Natl Acad Sci USA 84: 5833–5837 (1987).PubMedGoogle Scholar
  25. 25.
    Ludwig SR, Oppenheimer DG, Silflow CD, Snustad DP: The α1-tubulin gene of Arabidopsis thaliana: primary structure and preferential expression in flowers. Plant Mol Biol 10: 311–321 (1988).Google Scholar
  26. 26.
    MacDonald RJ, Swift GH, Przybyla AE, Chirgwin JM: Isolation of RNA using guanidinium salts. Meth Enzymol 152: 219–227 (1987).PubMedGoogle Scholar
  27. 27.
    Marks MD, West J, Weeks DP: The relatively large beta-tubulin gene family of Arabidopsis contains a member with an unusual transcribed 5′ noncoding sequence. Plant Mol Biol 10: 91–104 (1987).Google Scholar
  28. 28.
    Mendu N, Rines H, Silflow CD: Mapping of beta-tubulin genomic sequences in hexaploid oat (Avena sativa L.). Theor Appl Genet 86: 135–140 (1993).CrossRefGoogle Scholar
  29. 29.
    Miller KG, Sollner-Webb B: Transcription of mouse rRNA genes by RNA polymerase I: in vitro and in vivo initiation and processing sites. Cell 27: 165–174 (1981).CrossRefPubMedGoogle Scholar
  30. 30.
    Montoliu L, Puigdomènech P, Rigau J: The Tubα3 gene from Zea mays: structure and expression in dividing plant tissues. Gene 94: 201–207 (1990).CrossRefPubMedGoogle Scholar
  31. 31.
    Montoliu L, Rigau J, Puigdomènech P: A tandem of α-tubulin genes preferentially expressed in radicular tissues from Zea mays. Plant Mol Biol 14: 1–15 (1989).CrossRefGoogle Scholar
  32. 32.
    Montoliu L, Rigau J, Puigdomènech P: Multiple polyadenylation sites are active in the α1-tubulin gene from Zea mays. FEBS Lett 277: 29–32 (1990).CrossRefPubMedGoogle Scholar
  33. 33.
    Montoliu L, Rigau J, Puigdomènech P: Analysis by PCR of the number of homologous genomic sequences to α-tubulin in maize. Plant Sci 84: 179–185 (1992).CrossRefGoogle Scholar
  34. 34.
    Nelson M, McClelland M: Site-specific methylation: effect on DNA modification methyltransferases and restriction endonucleases. Nucl Acids Res 19: 2045–2071 (1991).PubMedGoogle Scholar
  35. 35.
    Ogawa J, Brierley HL, Long SR: Analysis of Rhizobium meliloti nodulation mutant WL131: novel insertion sequence ISRm3 in nodG and altered nodH protein product. J Bact 173: 3060–3065 (1991).PubMedGoogle Scholar
  36. 36.
    Oppenheimer DG, Haas N, Silflow CD, Snustad DP: The β-tubulin gene family of Arabidopsis thaliana: preferential accumulation of the β 1 transcript in roots. Gene 63: 87–102 (1988).CrossRefPubMedGoogle Scholar
  37. 37.
    Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1989).Google Scholar
  38. 38.
    Shirley BW, Ham DP, Senecoff JF, Berry-Lowe SL, Zurfluh LL, Shah DM, Meagher RB: Comparison of the expression of two highly homologous members of the soybean ribulose-1,5-bisphosphate carboxylase small subunit gene family. Plant Mol Biol 14: 909–925 (1990).PubMedGoogle Scholar
  39. 39.
    Shure M, Wessler S, Fedoroff N: Molecular identification and isolation of the Waxy locus in maize. Cell 35: 225–233 (1983).PubMedGoogle Scholar
  40. 40.
    Silflow CD, Oppenheimer DG, Kopczak SD, Ploense SE, Ludwig SR, Haas N, Snustad DP: Plant tubulin genes: structure and differential expression during development. Devel Genet 8: 435–460 (1987).Google Scholar
  41. 41.
    Snustad DP, Haas NA, Kopczak SD, Silflow CD: The small genome of Arabidopsis contains at least nine expressed β-tubulin genes. Plant Cell 4: 549–556 (1992).CrossRefPubMedGoogle Scholar
  42. 42.
    Southern EM: Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98: 503–517 (1975).PubMedGoogle Scholar
  43. 43.
    Stöcker M, Garcia-Mas J, Arús P, Masseguer R, Puigdomènech P: A highly conserved α-tubulin sequence from Prunus amygdalus. Plant Mol Biol 22: 913–916 (1993).CrossRefPubMedGoogle Scholar
  44. 44.
    Villemur R, Haas NA, Joyce CM, Snustad DP, Silflow CD: Characterization of four new β-tubulin genes and their expression during male flower development in maize (Zea mays L.) Plant Mol Biol 24: 295–315 (1994).PubMedGoogle Scholar
  45. 45.
    Villemur R, Joyce CM, Haas NA, Goddard RH, Kopczak SD, Hussey PJ, Snustad DP, Silflow CD: α-tubulin gene family of maize (Zea mays L.): evidence for two ancient α-tubulin genes in plants. J Mol Biol 227: 81–96 (1992).PubMedGoogle Scholar
  46. 46.
    Wahl GM, Berger SL, Kimmel AR: Molecular hybridization of immobilized nucleic acids: theoretical concepts and practical considerations. Meth Enzymol 152: 399–407 (1987).PubMedGoogle Scholar
  47. 47.
    Wang L-M, Weber DK, Johnson T, Sakaguchi AY: Supercoil sequencing using unpurified templates produced by rapid boiling. BioTechniques 6: 839–843 (1988).PubMedGoogle Scholar
  48. 48.
    Watson JC, Thompson WF: Purification and restriction endonuclease analysis of plant nuclear DNA. Meth Enzymol 118: 57–75 (1986).Google Scholar
  49. 49.
    Weeks D, Silflow C, Snustad P, Fosket D: Genes encoding tubulins. Plant Mol Biol Rep 12: S76 (1994).Google Scholar

Copyright information

© Kluwer Academic Publishers 1995

Authors and Affiliations

  • Heidi L. Brierley
    • 1
  • Philippa Webster
    • 1
  • Sharon R. Long
    • 1
  1. 1.Department of Biological SciencesStanford UniversityStanfordUSA

Personalised recommendations