Skip to main content
Log in

Detecting the Infection of the Cabernet Sauvignon Variety of Clonal Origin by Grape Viruses

  • Published:
Cytology and Genetics Aims and scope Submit manuscript

Abstract

The high-yielding Cabernet Sauvignon grape variety is susceptible to viral diseases, which may influence the agrobiological and taste characteristics of its quality. The objectives of this study are to identify a Cabernet Sauvignon variety of clonal origin from the south of Ukraine, detect the infection of plants of this variety with harmful grape viruses incorporated into the certification system of planting materials, determine the causative agent of viral diseases by biomolecular methods, and establish the nucleotide sequence of the 2CCP envelope protein gene of detected grape viruses. As a result of phytosanitary survey, some Cabernet Sauvignon grape bushes of clonal origin with symptoms of grapevine fanleaf virus (CFLV) and grapevine leaf roll-associated virus (GLRaV) have been revealed. The results of grape virus identification by the real-time reverse-transcription polymerase chain reaction (RT-PCR) have demonstrated the presence of grapevine fanleaf virus in grape plants with infection symptoms. As a result of sequencing, it has been established that the nucleotide sequence of an isolate from the Cabernet Sauvignon variety is very close to the samples from regions geographically distant from Ukraine, first of all, the United States, Iran, and France. Based on microsatellite analysis, it has been proven that specifically the Cabernet Sauvignon variety of clonal origin is infected with grapevine fanleaf virus. The obtained 2CCP envelope protein gene sequence has been deposited with the international GenBank database with no. MN072356.1.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1.
Fig. 2.
Fig. 3.
Fig. 4.
Fig. 5.
Fig. 6.

Similar content being viewed by others

REFERENCES

  1. Almeida, R.P.P., Daane, K.M., Bell, V.A., Blaisdell, G.K., Cooper, M.L., Herrbach, E., and Pietersen, G., Ecology and management of grapevine leafroll disease, Front. Microbiol., 2013, vol. 4, p. 94. https://doi.org/10.3389/fmicb.2013.00094

    Article  PubMed  PubMed Central  Google Scholar 

  2. Audeguin, L., Forget, D., Lusseau, T., Dufour, M.-C., and Lusson, A., GLRaV-2 Sanitation and performance of emblematic French clones of Cabernet-Sauvignon, Proc. 17th Congr. Int. Council for the Study of Virus and Virus-like Diseases of the Grapevine (ICVG), Davis: Univ. of California, 2012, pp. 154–155. https://icvg.org/data/ICVG-2012-Proceedings.pdf.

    Google Scholar 

  3. Bowers, J. and Meredith, C., The parentage of a classic wine grape, Cabernet Sauvignon, Nat. Genet., 1997, vol. 16, pp. 84–87. https://doi.org/10.1038/ng0597-84

    Article  CAS  PubMed  Google Scholar 

  4. Cauduro Girardello, R., Cooper, M.L., Lerno, L.A., Brenneman, C., Eridon, S., Sokolowsky, M., Heymann, H., and Oberholster, A., Impact of grapevine red blotch disease on Cabernet Sauvignon and Merlot wine composition and sensory attributes, Molecules, 2020, vol. 25, no. 14, p. 3299. https://doi.org/10.3390/molecules25143299

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Dimovska, V., Sofijanova, E., and Fidanka, I., Agro-biological characteristics of three Sauvignon blanc (Vitis vinifera L.) clones, growing in R. Macedonia, Sci. Technol., 2013, vol. 3, no. 6, pp. 9–14. https://eprints.ugd.edu.mk/id/eprint/6958

  6. Fuchs, M., Grapevine viruses: a multitude of diverse species with simple but overall poorly adopted management solutions in the vineyard, J. Plant Pathol., 2020, vol. 102, pp. 643–653. https://doi.org/10.1007/s42161-020-00579-2

    Article  Google Scholar 

  7. Golino, D.A., Wolpert, J., Sim, S.T., Benz, J., Anderson, M., and Rowhani, A., Virus effects on vine growth and fruit components of three California ‘Heritage’ clones of Cabernet Sauvignon, Proc. 2nd Annual National Viticulture Res. Conf., Davis: Univ. of California, 2008, pp. 30–31 https://iv.ucdavis.edu/files/108857.pdf.

    Google Scholar 

  8. ISO 16578:2013, Molecular biomarker analysis – General definitions and requirements for microarray detection of specific nucleic acid sequences. https://www.iso.org/standard/57185.html.

  9. Kumar, S., Stecher, G., Li, M., Knyaz, C., and Tamura, K., MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms, Mol. Biol. Evol., 2018, vol. 35, no. 6, pp. 1547–1549. https://doi.org/10.1093/molbev/msy096

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Mannini, F. and Digiaro, M., The effects of virusesand viral diseases on grapes and wine, in Grapevine Viruses: Molecular Biology, Diagnostics and Management, Meng, B., Martelli, G., Golino, D., and Fuchs, M., Eds., Cham: Springer-Verlag, 2017, pp. 453–482. https://doi.org/10.1007/978-3-319-57706-7_23

  11. Martínez, L.E., Cavagnaro, P.F., Masuelli, R.W., and Zúñiga, M., SSR-based assessment of genetic diversity in South American Vitis vinifera varieties, Plant Sci., 2005, vol. 170, no. 6, pp. 1036–1044. https://doi.org/10.1016/j.plantsci.2005.12.006

    Article  CAS  Google Scholar 

  12. Miljanić, V., Jakše, J., Kunej, U., Rusjan, D., Škvarč, A., and Štajner, N., Virome status of preclonal candidates of grapevine varieties (Vitis vinifera L.) from the slovenian wine-growing region primorska as determined by high-throughput sequencing, Front. Microbiol., 2022, vol. 13, p. 830866. https://doi.org/10.3389/fmicb.2022.830866

    Article  PubMed  PubMed Central  Google Scholar 

  13. Milkus, B.N., Konup, L.A., Zhunka, I.D., and Limanska, N.B., Testing of some grapevine cultivars for the presence of Crown Gall disease agent and Fanleaf and Leafroll viruses, Mikrobiol. Zh., 2005, vol. 67, no. 1, pp. 41–48 (In Ukrainian). http://dspace.onu.edu.ua:8080/bitstream/ 123456789/21393/1/41-48.pdf.

  14. OIV-CST 518-2016 (2016) OIV General Principles of Sustainable Vitiviniculture-Environmental-Social-Economic and Cultural Aspects. http://www.oiv.int/en/ technical-standards-anddocuments/resolutions-of-the-oiv/resolution-cst.

  15. Oliver, J.E., Vigne, E., and Fuchs, M., Genetic structure and molecular variability of Grapevine fanleaf virus populations, Virus Res., 2010, vol. 152, nos. 1–2, pp. 30–40. https://doi.org/10.1016/j.virusres.2010.05.017

    Article  CAS  PubMed  Google Scholar 

  16. Osman, F., Leutenegger, C., Golino, D., and Rowhani, A., Comparison of low-density arrays, RT-PCR and real-time TaqMan RT-PCR in detection of grapevine viruses, J. Virol. Methods, 2008, vol. 149, no. 2, pp. 292–299. https://doi.org/10.1016/j.jviromet.2008.01.012

    Article  CAS  PubMed  Google Scholar 

  17. Rowhani, A., Biardi, L., Johanson, R., Saldarelli, Zhang, Y.P., Chin, J., and Green, M., Simplified sample preparation method and one-tube RT-PCR for grapevine viruses, Proc. 13th Int. Council for the Study of Viruses and Virus-Like Diseases of the Grapevine (ICVG), Adelaide, 2000. https://icvg.org/data/abstra.pdf.

  18. Schmitt, D.E., Comin, J.J., Sete, P.B., Trapp, T., Ambrosini, V.G., and Brunetto, G., Yield and grape must composition in ‘Cabernet Sauvignon’ grape vine subjected to potassium fertilization in high altitude soil, Revista Brasileira de Ciências Agrárias, 2020, vol. 15, no. 4, p. e7482. https://doi.org/10.5039/agraria.v15i4a7482

    Article  Google Scholar 

  19. Sivolap, Yu.M., Verbitskaya, T.G., Prokopenko, S.N., and Tulaeva, M.I., Study of species DNA polymorphism in Vitits vinifera grapes, Cytol. Genet., 1992, vol. 26, no. 3, pp. 11–15.

    CAS  Google Scholar 

  20. Sudarshana, M.R., Perry, K.L., and Fuchs, M.F., Grapevine red blotch-associated virus, an emerging threat to the grapevine industry, Phytopathology, 2015, vol. 105, no. 7, pp. 1026–1032. https://doi.org/10.1094/PHYTO-12-14-0369-FI

    Article  PubMed  Google Scholar 

  21. Vlasov, V., Belous, I., Dzhaburiya, L., and Bulayeva, Y., Development model of winemaking regions in Ukraine, Agric. Sci. Pract., 2014, vol. 1, no. 1, pp. 53–61. https://doi.org/10.15407/agrisp1.01.053

    Article  Google Scholar 

  22. Vondras, A.M., Minio, A., Blanco-Ulate, B., Figueroa-Balderas, R., Penn, M.A., Zhou, Y., Seymour, D., Ye, Z., Liang, D., Espinoza, L.K., Anderson, M.M., Walker, M.A., Gaut, B., and Cantu, D., The genomic diversification of grapevine clones, BMC Genomics, 2019, vol. 20, p. 972. https://doi.org/10.1186/s12864-019-6211-2

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Funding

The study was performed within budget program no. 0116U001166 “Monitoring of Viral, Bacterial, and Phytoplasmic Diseases of Grapes in Ukraine to Find the Ways of Improving the Quality of Wine and Wine-Production Products to the Level of European Union Requirements for 2016–2020” of the Laboratory of Virology and Microbiology of the National Scientific Center Tairov Research Institute of Viticulture and Winemaking, National Academy of Sciences of Ukraine.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to L. A. Konup.

Ethics declarations

The authors declare that they have no conflicts of interest.

This paper does not contain any studies on people and animals as objects.

Additional information

Translated by E. Glushachenkova

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Kovaleva, I.A., Janse, L.A., Konup, L.A. et al. Detecting the Infection of the Cabernet Sauvignon Variety of Clonal Origin by Grape Viruses. Cytol. Genet. 56, 504–512 (2022). https://doi.org/10.3103/S0095452722060044

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.3103/S0095452722060044

Navigation