Abstract
A nanoporous material has been applied for the development of functional nanobiomaterials by utilizing its uniform pore structure and large adsorption capacity. The structure and stability of biomacromolecules, such as peptide, oligonucleotide, and protein, are primary factors to govern the performance of nanobiomaterials, so that their direct characterization methodologies are in progress. In this review, we focus on recent topics in the structural characterization of protein molecules adsorbed at a nanoporous material with uniform meso-sized pores. The thermal stabilities of the adsorbed proteins are also summarized to discuss whether the structure of the adsorbed protein molecules can be stabilized or not.
Similar content being viewed by others
References
M. Ogawa, J. Photochem. Photobiol. C, 2002, 3, 129.
M. Hartmann, Chem. Mater., 2005, 17, 4577.
A. Vinu, K. Z. Hossain, and K. Ariga, J. Nanosci. Nanotechnol., 2005, 5, 347.
A. Yamaguchi and N. Teramae, Anal. Sci., 2008, 24, 25.
K. Ariga, A. Vinu, Y. Yamauchi, Q. Ji, and J. P. Hill, Bull. Chem. Soc. Jpn., 2012, 85, 1.
C. Hofmann, A. Duerkop, and A. J. Baeumner, Angew. Chem. Int. Ed., 2019, 58, 12840.
J. Kima, J. W. Gratea, and P. Wang, Chem. Eng. Sci., 2006, 61, 1017.
S. Hudson, J. Cooney, and E. Magner, Angew. Chem. Int. Ed., 2008, 47, 8582.
C.-H. Lee, T. Lin, and C. Mou, Nano Today, 2009, 4, 165.
M. Hartmann and D. Jung, J. Mater. Chem., 2010, 20, 844.
Z. Zhou and M. Hartmann, Chem. Soc. Rev., 2013, 42, 3894.
T. Jesionowski, J. Zdarta, and B. Krajewska, Adsorption, 2014, 20, 801.
N. Carlsson, H. Gustafsson, C. Thörn, L. Olsson, K. Holmberg, and B. Åkerman, Adv. Colloid Interface Sci., 2014, 205, 339.
X. Lian, Y. Fang, E. Joseph, Q. Wang, J. Li, S. Banerjee, C. Lollar, X. Wang, and H.-C. Zhou, Chem. Soc. Rev., 2017, 46, 3386.
T. Itoh, A. Yamaguchi, T. Kyotani, T. Hanaoka, and F. Mizukami, Adv. Porous Mater., 2016, 4, 157.
X. Yang, P. Qiu, J. Yang, Y. Fan, L. Wang, W. Jiang, X. Cheng, Y. Deng, and W. Luo, Small, 2019, 1904022.
F. Sancenón, L. Pascual, M. Oroval, E. Aznar, and R. Martínez-Máñez, Chemistryopen, 2015, 4, 418.
J. M. Rosenholm, C. Sahlgren, and M. Lindén, Nanoscale, 2010, 2, 1870.
S. Alberti, G. J. A. A. Soler-Illia, and O. Azzaroni, Chem. Commun., 2015, 51, 6050.
R. R. Castillo, A. Baeza, and M. Vallet-Regí, Biomater. Sci., 2017, 5, 353.
L. Han, X.-Y. Zhang, Y.-L. Wang, X. Li, X.-H. Yang, M. Huang, K. Hu, L.-H. Li, and Y. Wei, J. Control. Release, 2017, 259, 40.
Z. Gu, A. Biswas, M. Zhao, and Y. Tang, Chem. Soc. Rev., 2011, 40, 3638.
C. Bharti, U. Nagaich, A. K. Pal, and N. Gulati, Int. J. Pharm. Invest., 2015, 5, 124.
H. Takahashi, B. Li, T. Sasaki, C. Miyazaki, T. Kajino, and S. Inagaki, Chem. Mater., 2000, 12, 3301.
T. Shimomura, T. Itoh, T. Sumiya, T. Hanaoka, F. Mizukami, and M. Ono, Sens. Actuators B, 2011, 153, 361.
S. Hudson, J. Cooney, B. K. Hodnett, and E. Magner, Chem. Mater., 2007, 19, 2049.
B. Nohair, P. T. H. Thao, V. T. H. Nguyen, P. Q. Tien, D. T. Phuong, L. G. Hy, and S. Kaliaguine, J. Phys. Chem. C, 2012, 116, 10904.
V. Gascón, I. Díaz, R. M. Blanco, and C. Márquez-Álvarez, RSC Adv., 2014, 4, 34356.
Z. Zhou, F. Piepenbreier, V. R. R. Marthala, K. Karbacher, and M. Hartmann, Catal. Today, 2015, 243, 173.
J. Wei, Y. Ren, W. Luo, Z. Sun, X. Cheng, Y. Li, Y. Deng, A. A. Elzatahry, D. Al-Dahyan, and D. Zhao, Chem. Mater., 2017, 29, 2211.
X. Yang, X. Cheng, H. Song, J. Ma, P. Pan, A. A. Elzatahry, J. Su, and Y. Deng, Adv. Healthc. Mater., 2018, 7, 1800149.
A. Trifonov, K. Herkendell, R. Tel-Vered, O. Yehezkeli, M. Woerner, and I. Willner, ACS Nano, 2013, 7, 11358.
C. O. Ania, A. Gomis-Berenguer, J. Dentzer, and C. Vix-Guterl, J. Electroanal. Chem., 2018, 808, 372.
T. Itoh, Y. Shibuya, A. Yamaguchi, Y. Hoshikawa, O. Tanaike, T. Tsunoda, T. Hanaoka, S. Hamakawa, F. Mizukami, A. Hayashi, T. Kyotani, and G. D. Stucky, J. Mater. Chem. A, 2017, 5, 20244.
Y. Chen, P. Li, J. A. Modica, R. J. Drout, and O. Farha, J. Am. Chem. Soc., 2018, 140, 5678.
G. Cheng, W. Li, L. Ha, X. Han, S. Hao, Y. Wan, Z. Wang, F. Dong, X. Zou, Y. Mao, and S.-Y. Zheng, J. Am. Chem. Soc., 2018, 140, 7282.
C. Bernal, A. Illanes, and L. Wilson, Langmuir, 2014, 30, 3557.
M. Thommes, K. Kaneko, A. V. Neimark, J. P. Olivier, F. Rodoriguez-Reinoso, J. Rouquerol, and K. S. W. Sing, Pure Appl. Chem., 2015, 87, 1051.
K. Miyasaka, A. V. Neimark, and O. Terasaki, J. Phys. Chem. C, 2009, 113, 791.
M. A. Smith, M. G. Ilasi, and A. Zoelle, J. Phys. Chem. C, 2013, 117, 17493.
A. Galarneau, H. Cambon, F. D. Renzo, and F. Fajula, Langmuir, 2001, 17, 8328.
A. Galarneau, F. Villemot, J. Rodriguez, F. Fajula, and B. Coasne, Langmuir, 2014, 30, 13266.
M. Kruk, M. Jaroniec, C. H. Ko, and R. Ryoo, Chem. Mater., 2000, 12, 1961.
P. I. Ravikovitch and A. V. Neimark, J. Phys. Chem. B, 2001, 105, 6817.
A. Endo, T. Yamamoto, Y. Inagaki, K. Iwakabe, and T. Ohmori, J. Phys. Chem. C, 2008, 112, 9034.
X. Xie, M. Satozawa, K. Kunimori, and S. Hayashi, Micropor. Mesopor. Mater., 2000, 39, 25.
M. Ide, M. El-Roz, E. D. Canck, A. Vicente, T. Planckaert, T. Bogaerts, I. van Driessche, F. Lynen, V. van Speybroeck, F. Thybault-Starzyk, and P. van der Voort, Phys. Chem. Chem. Phys., 2013, 15, 642.
A. Yamaguchi, Y. Edanami, T. Yamaguchi, Y. Shibuya, N. Fukaya, and T. Kohzuma, Bull. Chem. Soc. Jpn., 2020, 93, 630.
J. M. Rosenholm, T. Czuryszkiewicz, F. Kleitz, J. B. Rosenholm, and M. Lindén, Langmuir, 2007, 23, 4315.
S. Kittaka, S. Ishimaru, M. Kuranishi, T. Matsuda, and T. Yamaguchi, Phys. Chem. Chem. Phys., 2006, 8, 3223.
S. Kittaka, K. Sou, T. Yamaguchi, and K. Tozaki, Phys. Chem. Chem. Phys., 2009, 11, 8538.
S. Jähnert, F. V. Chávez, G. E. Schaumann, A. Schreiber, M. Schönhoff, and G. H. Findenegg, Phys. Chem. Chem. Phys., 2008, 10, 6039.
P. Smirnov, T. Yamaguchi, S. Kittaka, S. Takahara, and Y. Kuroda, J. Phys. Chem. B, 2000, 104, 5498.
S. Takahara, M. Nakano, S. Kittaka, Y. Kuroda, T. Mori, H. Hamano, and T. Yamaguchi, J. Phys. Chem. B, 1999, 103, 5814.
D. C. M. Casillas, M. P. Longinotti, M. M. Bruno, F. V. Chávez, R. H. Acosta, and H. R. Corti, J. Phys. Chem. C, 2018, 122, 3638.
S. A. Yamada, S. T. Hung, W. H. Thompson, and M. D. Fayer, J. Chem. Phys., 2020, 152, 154704.
M. Aso, K. Ito, H. Sugino, K. Yoshida, T. Yamada, O. Yamamuro, S. Inagaki, and T. Yamaguchi, Pure Appl. Chem., 2012, 85, 289.
G. Buntkowsky, H. Breitzke, A. Adamczyk, F. Roelofs, T. Emmler, E. Gedat, B. Grünberg, Y. Xu, H.-H. Limbach, I. Shenderovich, A. Vyalikh, and G. Findenegg, Phys. Chem. Chem. Phys., 2007, 9, 4843.
A. Yamaguchi, M. Namekawa, T. Itoh, and N. Teramae, Anal. Sci., 2012, 28, 1065.
D. Liu, Y. Zhang, C.-C. Chen, C.-Y. Mou, P. H. Poole, and S.-H. Chen, Proc. Natl. Acad. Sci. U. S. A., 2007, 104, 9570.
F. Mallamace, C. Branca, M. Broccio, C. Corsaro, C.-Y. Mou, and S.-H. Chen, Proc. Natl. Acad. Sci. U. S. A., 2007, 104, 18387.
K.-H. Liu, Y. Zhang, J.-J. Lee, C.-C. Chen, Y.-Q. Yeh, S.-H. Chen, and C.-Y. Mou, J. Chem. Phys., 2013, 139, 064502.
A. Yamaguchi, T. Yoda, S. Suzuki, K. Morita, and N. Teramae, Anal. Sci., 2006, 22, 1501.
Y. Fu, F. Ye, W. G. Sanders, M. M. Collinson, and D. A. Higgins, J. Phys. Chem. B, 2006, 110, 9164.
M. Gil, S. Wang, J. A. Organero, L. Teruel, H. Garcia, and A. Douhal, J. Phys. Chem. C, 2009, 113, 11614.
M. Gil, C. Martin, J. A. Organero, M. T. Navarro, A. Corma, and A. Douhal, J. Phys. Chem. C, 2010, 114, 6311.
D. A. Bryce, J. P. Kitt, and J. M. Harris, Anal. Chem., 2017, 89, 2755.
T. Sato, K. Hata, and K. Nakatani, Anal. Sci., 2017, 33, 647.
K. Yoshida, T. Inoue, M. Torigoe, T. Yamada, K. Shibata, and T. Yamaguchi, J. Chem. Phys., 2018, 149, 124502.
H. Takahashi, B. Li, T. Sasaki, C. Miyazaki, T. Kajino, and S. Inagaki, Micropor. Mesopor. Mater., 2001, 44-45, 755.
A. Yamaguchi, K. Taki, J. Kijima, Y. Edanami, and Y. Shibuya, Anal. Sci., 2018, 34, 1393.
A. Yamaguchi, C. Kashimura, M. Aizawa, and Y. Shibuya, ACS Omega, 2020, 5, 22993.
H. Ikemoto, S. Tubasum, T. Pullerits, J. Ulstrup, and Q. Chi, J. Phys. Chem. C, 2013, 117, 2868.
A. M. Clemments, P. Botella, and C. C. Landry, J. Am. Chem, Soc., 2017, 139, 3978.
L. M. Karlsson, P. Tengwall, I. Lundström, and H. Arwin, J. Colloid Interface Sci., 2003, 266, 40.
J. Deere, M. Serantoni, K. J. Edler, B. K. Hodnett, J. G. Wall, and E. Magner, Langmuir, 2004, 20, 532.
F. Krohm, H. Didzoleit, M. Schulze, C. Dietz, R. W. Stark, C. Hess, B. Stühn, and A. Brunsen, Langmuir, 2014, 30, 369.
A. Yamaguchi, K. Katayama, and S. A. Holt, Anal. Sci., 2020, 36, 1331.
S. Isaksson, E. B. Watkins, K. L. Browning, T. K. Lind, M. Cárdenas, K. Hedfalk, F. Höök, and M. Andersson, Nano Lett., 2017, 17, 476.
W. Ogieglo, H. Wormeester, K.-J. Eichhorn, M. Wessling, and N. E. Bens, Prog. Polym. Sci., 2015, 42, 42.
J. Daillant and A. Gibaud (ed.), “X-ray and Neutron Reflectivity—Principles and Applications”, 2009, Springer-Verlag, Berlin, Heiderberg.
Y. Shibuya, K. Katayama, K. Akutsu-Suyama, and A. Yamaguchi, ASC Omega, 2019, 4, 17890.
M. Y. Chen and M. J. Sailor, Anal. Chem., 2011, 83, 7186.
K. Hotta, A. Yamaguchi, and N. Teramae, ACS Nano, 2012, 6, 1541.
H. Arafune, A. Yamaguchi, K. Hotta, T. Itoh, and N. Teramae, Anal. Sci., 2013, 29, 187.
H. Arafune, K. Hotta, T. Itoh, N. Teramae, and A. Yamaguchi, Anal. Sci., 2017, 33, 473.
T. Itoh, R. Ishii, T. Ebina, T. Hanaoka, Y. Fukushima, and F. Mizukami, Bioconjugate Chem., 2006, 17, 236.
Y. Urabe, T. Shiomi, T. Itoh, A. Kawai, T. Tsunoda, F. Mizukami, and K. Sakaguchi, ChemBioChem, 2007, 8, 668.
T. Itoh, R. Ishii, T. Ebina, T. Hanaoka, T. Ikeda, Y. Urabe, Y. Fukushima, and F. Mizukami, Biotechnol. Bioeng., 2007, 97, 200.
J. Méndez, M. M. Cruz, Y. Delgado, C. M. Figueroa, E. A. Orellano, M. Morales, A. Monteagudo, and K. Griebenow, Mol. Pharm., 2014, 11, 102.
K.-C. Kao, C.-H. Lee, T.-S. Lin, and C.-Y. Mou, J. Mater. Chem., 2010, 20, 4653.
C.-H. Lee, J. Lang, C.-W. Yen, P.-C. Shih, T.-S. Lin, and C.-Y. Mou, J. Phys. Chem. B, 2005, 109, 12277.
Y. Pan, H. Li, J. Farmakes, F. Xiao, B. Chen, S. Ma, and Z. Yang, J. Am. Chem. Soc., 2018, 140, 16032.
Y.-C. Lai, Y.-F. Chen, and Y.-W. Chiang, Plos One, 2013, 8, e68264.
V. C. Özalp, A. Pinto, E. Nikulina, A. Chuvilin, and T. Schäfer, Part. Part. Syst. Charact., 2014, 31, 161.
C. Torre, A. Agostini, L. Mondragón, M. Orzáez, F. Sancenón, R. Martínez-Máñez, M. D. Marcos, P. Amorós, and E. Pérez-Payá, Chem. Commun., 2014, 50, 3184.
K.-C. Kao, T.-S. Lin, and C.-Y. Mou, J. Phys. Chem. C, 2014, 118, 6734.
Y. He, M. Wang, H. Zhang, Y. Zhang, Y. Gao, and S. Wang, J. Colloid Interface Sci., 2020, 560, 690.
S. E. Lehman, I. A. Mudunkotuwa, V. H. Grassian, and S. C. Larsen, Langmuir, 2016, 32, 731.
L. C. Sang and M.-O. Coppens, Phys. Chem. Chem. Phys., 2011, 13, 6689.
Z. Ma, J. Bai, Y. Wang, and X. Jiang, ACS Appl. Mater. Interfaces, 2014, 6, 2431.
J. Kijima, Y. Shibuya, K. Katayama, T. Itoh, H. Iwase, Y. Fukushima, M. Kubo, and A. Yamaguchi, J. Phys. Chem. C, 2018, 122, 15567.
J. Siefker, R. Biehl, M. Kruteva, A. Feoktystov, and M.-O. Coppens, J. Am. Chem. Soc., 2018, 140, 12720.
T. Imae, T. Kanaya, M. Furusaka, and N. Torikai (ed.), “Neutrons in Soft Mater”, 2011, John Wiley and Sons, Hoboken, NJ.
Y. Chen, V. Lykourinou, C. Vetromile, T. Hoang, L.-J. Ming, R. W. Larsen, and S. Ma, J. Am. Chem. Soc., 2012, 134, 13188.
Y. Masuda, S. Kugimiya, K. Murai, A. Hayashi, and K. Kato, Colloids Surf. B, 2013, 101, 26.
Y. Masuda, S. Kugimiya, Y. Kawachi, and K. Kato, RSC Adv., 2014, 4, 3573.
Y. S. Chaudhary, S. K. Manna, S. Mazumdar, and D. Khushalani, Micropor. Mesopor. Mater., 2008, 109, 535.
Y. Qu, C. Kong, H. Zhou, E. Shen, J. Wang, W. Shen, X. Zhang, Z. Zhang, Q. Ma, and J. Zhou, J. Mol. Catal. B, 2014, 99, 136.
B. Chen, C. Lei, Y. Shin, and J. Liu, Biochem. Biophys. Res. Commun., 2009, 390, 1177.
M. Falahati, L. Ma’mani, A. A. Saboury, A. Shafiee, A. Foroumadi, and A. R. Badiei, Biochim. Biophys. Acta, 2011, 1814, 1195.
K. Murai, T. Nonoyama, T. Saito, and K. Kato, Catal. Sci. Technol., 2012, 2, 310.
R. Ravindra, S. Zhao, H. Gies, and R. Winter, J. Am. Chem. Soc., 2004, 126, 12224.
Y. Shibuya, T. Itoh, S. Matsuura, and A. Yamaguchi, Anal. Sci., 2015, 31, 1069.
H. Arafune, A. Yamaguchi, M. Namekawa, Y. Sato, T. Itoh, R. Yoshida, and N. Teramae, Nat. Commun., 2014, 5, 5151.
T. Masuda, Y. Shibuya, S. Arai, S. Kobayashi, S. Suzuki, J. Kijima, T. Itoh, Y. Sato, S. Nishizawa, and A. Yamaguchi, Langmuir, 2018, 34, 5545.
A. Yamaguchi, K. Nasu, N. Wakaume, Y. Shibuya, J. Kijima, and T. Itoh, Chem. Lett., 2016, 45, 1425.
Acknowledgments
This work is supported in part by JSPS Kakenhi Grant nos. JP16H04160 and JP17K19022.
Author information
Authors and Affiliations
Corresponding author
Additional information
Akira Yamaguchireceived his Ph.D. degree in 2000 from Tohoku University. He worked as a postdoctoral fellow at Tokushima University (2000 – 2002), and as assistant professor at Tohoku University (2002 – 2009). He became an associate professor at Ibaraki University in 2010, and has been a full professor there since 2017. His research interest is development of analytical tools based on nanobiomaterials.
Masahiro Saigareceived his bachelorʼs degree in 2020 from Ibaraki University. He is a Master student of Graduate School of Science and Engineering, Ibaraki University. His research interest is development of a fluorescence-based biosensor.
Daiki Inabareceived his bachelorʼs degree in 2020 from Ibaraki University. He is a Master student of Graduate School of Science and Engineering, Ibaraki University. His research interest is development of an invasive biosensor based on inorganic nanoporous materials.
Rights and permissions
About this article
Cite this article
Yamaguchi, A., Saiga, M., Inaba, D. et al. Structural Characterization of Proteins Adsorbed at Nanoporous Materials. ANAL. SCI. 37, 49–59 (2021). https://doi.org/10.2116/analsci.20SAR05
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.2116/analsci.20SAR05