Abstract
The paper deals with the issue of self-organization in applied sciences. It is particularly related to the emergence of Turing patterns. The goal is to analyze the domain size driven instability: We introduce the parameter L, which scales the size of the domain. We investigate a particular reaction-diffusion model in 1-D for two species. We consider and analyze the steady-state solution. We want to compute the solution branches by numerical continuation. The model in question has certain symmetries. We define and classify them. Our goal is to calculate a global bifurcation diagram.
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E. L. Allgower, K. Georg: Introduction to Numerical Continuation Methods. Classics in Applied Mathematics 45. SIAM, Philadelphia, 2003.
R. E. Baker, E. A. Gaffney, P. K. Maini: Partial differential equations for self-organization in cellular and developmental biology. Nonlinearity 21 (2008), R251–R290.
K. Böhmer, W. Govaerts, V. Janovský: Numerical detection of symmetry breaking bifurcation points with nonlinear degeneracies. Math. Comput. 68 (1999), 1097–1108.
P. Chossat, R. Lauterbach: Methods in Equivariant Bifurcations and Dynamical Systems. Advanced Series in Nonlinear Dynamics 15. World Scientific, Singapore, 2000.
A. Dhooge, W. Govaerts, Y. A. Kuznetsov: MATCONT: A MATLAB package for numerical bifurcation analysis of ODEs. ACM Trans. Math. Softw. 29 (2003), 141–164.
A. Dhooge, W. Govaerts, Y. A. Kuznetsov: MATCONT and CL-MATCONT: Continuation Toolboxes in MATLAB. University Gent, Gent, 2011.
A. Gierer, H. Meinhardt: A theory of biological pattern formation. Kybernetik 12 (1972), 30–39.
M. Golubitsky, D. G. Schaeffer: Singularities and Groups in Bifurcation Theory. I. Applied Mathematical Sciences 51. Springer, New York, 1985.
M. Golubitsky, I. Stewart, D. G. Schaeffer: Singularities and Groups in Bifurcation Theory. II. Applied Mathematical Sciences 69. Springer, New York, 1988.
W. J. F. Govaerts: Numerical Methods for Bifurcations of Dynamical Equilibria. SIAM, Philadelphia, 2000.
V. Janovský, P. Plecháč: Numerical applications of equivariant reduction techniques. Bifurcation and Symmetry: Cross Influence Between Mathematics and Applications. International Series of Numerical Mathematics 104. Birkhäuser, Basel, 1992, pp. 203–213.
V. Klika: Significance of non-normality-induced patterns: Transient growth versus asymptotic stability. Chaos 27 (2017), Article ID 073120, 9 pages.
V. Klika, R. E. Baker, D. Headon, E. A. Gaffney: The influence of receptor-mediated interactions on reaction-diffusion mechanisms of cellular self-organisation. Bull. Math. Biol. 74 (2012), 935–957.
V. Klika, M. Kozák, E. A. Gaffney: Domain size driven instability: Self-organization in systems with advection. SIAM J. Appl. Math. 78 (2018), 2298–2322.
Y. A. Kuznetsov: Elements of Applied Bifurcation Theory. Applied Mathematical Sciences 112. Springer, New York, 1998.
A. Marciniak-Czochra, G. Karch, K. Suzuki: Instability of Turing patterns in reaction-diffusion-ODE systems. J. Math. Biol. 74 (2017), 583–618.
J. D. Murray: Mathematical Biology. II. Spatial Models and Biomedical Applications. Interdisciplinary Applied Mathematics 18. Springer, New York, 2003.
J. Schnakenberg: Simple chemical reaction systems with limit cycle behaviour. J. Theoret. Biol. 81 (1979), 389–400.
L. N. Trefethen, M. Embree: Spectra and Pseudospectra. The Behavior of Nonnormal Matrices and Operators. Princeton University Press, Princeton, 2005.
A. M. Turing: The chemical basis of morphogenesis. Philos. Trans. R. Soc. Lond., Ser. B, Biol. Sci. 237 (1952), 37–72.
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Janovský, V. Analysis of pattern formation using numerical continuation. Appl Math 67, 705–726 (2022). https://doi.org/10.21136/AM.2022.0126-21
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DOI: https://doi.org/10.21136/AM.2022.0126-21