Abstract
Genetically encoded fluorescent protein-based biosensors are widely used for pH monitoring in live cells. In this work, we have shown that fluorescent protein from Dendronephthya sp. (DendFP) has pronounced pH sensitivity. In contrast to the majority of the known genetically encoded pH-sensors, for this protein, the acidification of the environment does not lead to fluorescence quenching but just shifts it emission maximum from red to green. For this reason, it appears possible to quantitatively measure pH by the ratio of emission intensity in the red and green range, which sets DendFP apart from other pH-sensors.
Similar content being viewed by others
References
Chalfie, M., Tu, Y., Euskirchen, G., Ward, W.W., and Prasher, D.C., Science, 1994, vol. 263, pp. 802–805.
Matz, M.V., Fradkov, A.F., Labas, Ya., Savitsky, A.P., Zaraisky, A.G., Markelov, M.L., and Lukyanov, S.A., Nat. Biotechnol., 1999, vol. 17, pp. 969–973.
Lukyanov, K.A., Chudakov, D.M., Lukyanov, S., and Verkhusha, V.V., Nat. Rev. Mol. Cell Biol., 2005, vol. 6, pp. 885–891.
Patterson, G.H. and Lippincott-Schwartz, J., Science, 2002, vol. 297, pp. 1873–1877.
Stepanenko, O.V., Stepanenko, O.V., Shcherbakova, D.M., Kuznetsova, I.M., Turoverov, K.K., and Verkhusha, V.V., BioTechniques, 2011, vol. 51, pp. 313–327.
Pakhomov, A.A. and Martynov, V.I., Chem. Biol., 2008, vol. 15, pp. 755–764.
Chudakov, D.M., Feofanov, A.V., Mudrik, N.N., Lukyanov, S., and Lukyanov, K.A., J. Biol. Chem., 2003, vol. 278, pp. 7215–7219.
Habuchi, S., Ando, R., Dedecker, P., Verheijen, W., Mizuno, H., Miyawaki, A., and Hofkens, J., Proc. Natl. Acad. Sci. U.S.A., 2005, vol. 102, pp. 9511–9516.
Mizuno, H., Mal, T.K., Tong, K.I., Ando, R., Furuta, T., Ikura, M., and Miyawaki, A., Mol. Cell, 2003, vol. 12, pp. 1051–1058.
Pakhomov, A.A., Martynova, N.Y., Gurskaya, N.G., Balashova, T.A., and Martynov, V.I., Biochemistry (Moscow), 2004, vol. 69, pp. 901–908.
Pakhomov, A.A. and Martynov, V.I., Biochemistry (Moscow), 2009, vol. 74, pp. 250–259.
Chudakov, D.M., Matz, M.V., Lukyanov, S., and Lukyanov, K.A., Physiol. Rev., 2010, vol. 90, pp. 1103–1163.
Betzig, E., Patterson, G.H., Sougrat, R., Lindwasser, O.W., Olenych, S., Bonifacino, J.S., Davidson, M.W., Lippincott-Schwartz, J., and Hess, H.F., Science, 2006, vol. 313, pp. 1642–1645.
Pakhomov, A.A. and Martynov, V.I., Biochem. Biophys. Res. Commun., 2011, vol. 407, pp. 230–235.
Sniegowski, J.A., Phail, M.E., and Wachter, R.M., Biochem. Biophys. Res. Commun., 2005, vol. 332, pp. 657–663.
Kim, H., Grunkemeyer, T.J., Modi, C., Chen, L., Fromme, R., Matz, M.V., and Wachter, R.M., Biochemistry, 2013, vol. 52, pp. 8048–8059.
Yampolsky, I.V., Kislukhin, A.A., Amatov, T.T., Shcherbo, D., Potapov, V.K., Lukyanov, S., and Lukyanov, K.A., Bioorg. Chem., 2008, vol. 36, pp. 96–104.
Dong, J., Solntsev, K.M., and Tolbert, L.M., J. Am. Chem. Soc., 2006, vol. 128, pp. 12038–12039.
Pakhomov, A.A., Tretyakova, S.A., and Martynov, V.I., Dokl. Biochem. Biophys., 2012, vol. 445, pp. 207–209.
Bizzarri, M., Serresi, S., and Luin, F., Beltram, Anal. Bioanal. Chem., 2009, vol. 393, pp. 1107–1122.
Tretyakova, Ya., Pakhomov, A.A., and Martynov, V.I., J. Am. Chem. Soc., 2007, vol. 129, pp. 7748–7749.
Pakhomov, A.A. and Martynov, V.I., Biochemistry, 2007, vol. 46, pp. 11528–11535.
Lakowicz, J.R., Principles of Fluorescence Spectroscopy, 3rd ed., 2006.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © A.A. Pakhomov, R.V. Chertkova, V.I. Martynov, 2015, published in Bioorganicheskaya Khimiya, 2015, Vol. 41, No. 6, pp. 669–674.
The article has been adapted from the report presented at the VIIth All-Russian symposium “Proteins and Peptides”, Novosibirsk, 12–17 July, 2015.
Rights and permissions
About this article
Cite this article
Pakhomov, A.A., Chertkova, R.V. & Martynov, V.I. pH-sensor properties of a fluorescent protein from Dendronephthya sp.. Russ J Bioorg Chem 41, 602–606 (2015). https://doi.org/10.1134/S1068162015060114
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1068162015060114