Abstract
The possibility of bacteriochrome-based infrared fluorescent protein iRFP use as an acceptor for the Förster resonance energy transfer (FRET) was investigated. GFP-like far-red fluorescent proteins mKate2, eqFP650, and eqFP670 were used as energy donors. Bacterial expression vectors encoding donor and acceptor proteins joined by a heptadecapeptide linker were constructed with the goal to test FRET. The efficiency of FRET was estimated in vitro for the isolated proteins from the increase of the donor emission following cleavage of the linker. Among the three tested constructs the eqFP650-iRFP pair demonstrated the most efficient energy transfer (approximately 30%).
Similar content being viewed by others
Abbreviations
- GFP:
-
green fluorescent protein
- FRET:
-
Forster (or fluorescence) resonance energy transfer
- iRFP:
-
infrared fluorescent protein
References
Chudakov, D.M., Matz, M.V., Lukyanov, S., and Lukyanov, K.A., Physiol. Rev., 2010, vol. 90, pp. 1103–1163.
Deliolanis, N.C., Kasmieh, R., Wurdinger, T., Tannous, B.A., Shah, K., and Ntziachristos, V., J. Biomed. Opt., 2008, vol. 13, p. 044008.
Gurskaya, N.G., Fradkov, A.F., Terskikh, A., Matz, M.V., Labas, Y.A., Martynov, V.I., Yanushevich, Y.G., Lukyanov, K.A., and Lukyanov, S.A., FEBS Lett., 2001, vol. 507, pp. 16–20.
Shkrob, M.A., Yanushevich, Y.G., Chudakov, D.M., Gurskaya, N.G., Labas, Y.A., Poponov, S.Y., Mudrik N.N., Lukyanov, S., and Lukyanov, K.A., Biochem. J., 2005, vol. 392, pp. 649–654.
Shcherbo, D., Merzlyak, E.M., Chepurnykh, T.V., Fradkov, A.F., Ermakova, G.V., Solovieva, E.A., Lukyanov, K.A., Bogdanova, E.A., Zaraisky, A.G., Lukyanov, S., and Chudakov, D.M., Nat. Methods, 2007, vol. 4, pp. 741–746.
Shcherbo, D., Murphy, C.S., Ermakova, G.V., Solovieva, E.A., Chepurnykh, T.V., Shcheglov, A.S., Verkhusha, V.V., Pletnev, V.Z., Hazelwood, K.L., Roche, P.M., Lukyanov, S., Zaraisky, A.G., Davidson, M.W., and Chudakov, D.M., Biochem. J., 2009, vol. 418, pp. 567–574.
Shcherbo, D., Shemiakina, I.I., Ryabova, A.V., Luker, K.E., Schmidt, B.T., Souslova, E.A., Gorodnicheva, T.V., Strukova, L., Shidlovskiy, K.M., Britanova, O.V., Zaraisky, A.G., Lukyanov, K.A., Loschenov, V.B., Luker, G.D., and Chudakov, D.M., Nat. Methods, 2010, vol. 7, pp. 827–829.
Chu, J., Haynes, R.D., Corbel, S.Y., Li, P., Gonzalez-Gonzalez, E., Burg, J.S., Ataie, N.J., Lam, A.J., Cranfill, P.J., Baird, M.A., Davidson, M.W., Ng, H.L., Garcia, K.C., Contag, C.H., Shen, K., Blau, H.M., and Lin, M.Z., Nat. Methods, 2014, vol. 11, pp. 572–578.
Shu, X., Royant, A., Lin, M.Z., Aguilera, T.A., LevRam, V., Steinbach, P.A., and Tsien, R.Y., Science, 2009, vol. 324, pp. 804–807.
Filonov, G.S., Piatkevich, K.D., Ting, L.M., Zhang, J., Kim, K., and Verkhusha, V.V., Nat. Biotechnol., 2011, vol. 29, pp. 757–761.
Shcherbakova, D.M. and Verkhusha, V.V., Nat. Methods, 2013, vol. 10, pp. 751–754.
Piatkevich, K.D., Subach, F.V., and Verkhusha, V.V., Chem. Soc. Rev., 2013, vol. 42, pp. 3441–3452.
Pietraszewska-Bogiel, A. and Gadella, T.W., J. Microsc., 2011, vol. 241, pp. 111–118.
Arai, Y. and Nagai, T., Microscopy (Oxf.), 2013, vol. 62, pp. 419–428.
Filonov, G.S., Krumholz, A., Xia, J., Yao, J., Wang, L.V., and Verkhusha, V.V., Angew. Chem., Int. Ed. Engl., 2012, vol. 51, pp. 1448–1451.
Hock, A.K., Lee, P., Maddocks, O.D., Mason, S.M., Blyth, K., and Vousden, K.H., Cell Cycle, 2014, vol. 13, pp. 220–226.
Paulus-Hock, V., Cheung, E.C., Roxburgh, P., Vousden, K.H., and Hock, A.K., PLoS One, 2014, vol. 9, p. e98399.
Tran, M.T., Tanaka, J., Hamada, M., Sugiyama, Y., Sakaguchi, S., Nakamura, M., Takahashi, S., and Miwa, Y., Exp. Anim., 2014, vol. 63, pp. 311–319.
Mahajan, N.P., Harrison-Shostak, D.C., Michaux, J., and Herman, B., Chem. Biol., 1999, vol. 6, pp. 401–409.
Bardet, P.L., Kolahgar, G., Mynett, A., Miguel-Aliaga, I., Briscoe, J., Meier, P., and Vincent, J.P., Proc. Natl. Acad. Sci. USA, 2008, vol. 105, pp. 13901–13905.
Subach, O.M., Gundorov, I.S., Yoshimura, M., Subach, F.V., Zhang, J., Gruenwald, D., Souslova, E.A., Chudakov, D.M., and Verkhusha, V.V., Chem. Biol., 2008, vol. 15, pp. 1116–1124.
Shcherbo, D., Souslova, E.A., Goedhart, J., Chepurnykh, T.V., Gaintzeva, A., Shemiakina, I.I., Gadella, T.W., Lukyanov, S., and Chudakov, D.M., BMC Biotechnol., 2009, vol. 9, p. 24.
Kominami, K., Nagai, T., Sawasaki, T., Tsujimura, Y., Yashima, K., Sunaga, Y., Tsuchimochi, M., Nishimura, J., Chiba, K., Nakabayashi, J., Koyamada, K., Endo, Y., Yokota, H., Miyawaki, A., Manabe, N., and Sakamaki, K., PLoS One, 2012, vol. 7, p. e50218.
Gambetta, G.A. and Lagarias, J.C., Proc. Natl. Acad. Sci. USA, 2001, vol. 98, pp. 10566–10571.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © O.A. Zlobovskaya, K.S. Sarkisyan, K.A. Lukyanov, 2015, published in Bioorganicheskaya Khimiya, 2015, Vol. 41, No. 3, pp. 299–304.
Rights and permissions
About this article
Cite this article
Zlobovskaya, O.A., Sarkisyan, K.S. & Lukyanov, K.A. Infrared fluorescent protein iRFP as an acceptor for resonance excitation energy transfer. Russ J Bioorg Chem 41, 266–270 (2015). https://doi.org/10.1134/S1068162015030139
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1068162015030139