Abstract—
Analysis of the aerobic heterotrophic component of bacterial communities from samples of poorly studied ancient ice wedge from the Mamontova Gora section (Central Yakutia), was carried out. The abundance of colony forming cells (CFU) of aerobic heterotrophic bacteria detected by plating of the thawed samples onto an agar nutrient media varied within 103‒104 CFU/mL. At the same time, the total number of intact cells was only 1−2 orders of magnitude higher. The taxonomic position of bacteria was determined by analysis of the 16S rRNA gene sequences. These bacteria were represented by three phyla: Actinobacteria, Firmicutes, and Proteobacteria. The temperature growth range of 8–20°C, which is characteristic of psychrotolerant bacteria, proved to be a specific physiological feature of the isolated strains. Most bacteria were found to be sensitive to a wide range of antibiotics.
Similar content being viewed by others
REFERENCES
Allen, H.K., Donato, J., Wang, H.H., Cloud-Hansen, K.A., and Davies, J., Call of the wild: antibiotic resistance genes in natural environments, Nat. Rev. Micro., 2010, vol. 8, pp. 251–259.
Birnboim, H.C. and Doly, J., A rapid alkaline extraction procedure for screening recombinant plasmid DNA, Nucleic Acids Res., 1979, vol. 24, pp. 1513–1523.
Brouchkov, A., Kabilov, M., Filippova, S., Baturina, O., Rogov, V., Galchenko, V., Mulyukin, A., Fursova, O., and Pogorelko, G., Bacterial community in ancient permafrost alluvium at the Mammoth Mountain (Eastern Siberia), Gene, 2017, no. 636, pp. 48–53.
D’Costa, V.M., King, C.E., Kalan, L., Morar, M., Wilson, W.L.S., Schwarz, C., Froese, D., Zazula, G., Calmels, F., Debruyne, R., Poinar, H.N., and Wright, G.D., Antibiotic resistance is ancient, Nature, 2011, vol. 477, pp. 457–461.
Davies, J. and Davies, D., Origins and evolution of antibiotic resistance, Microbiol. Mol. Biol. Rev., 2010, vol. 74, pp. 417–433.
Ershov, E.D., Obshchaya geokriologiya (General Geocryology), Moscow: Mosk. Gos. Univ., 2002.
Fendrihan, S. and Negoiţâ, T.Gh., Psychrophilic microorganisms as important source for biotechnological processes, in Adaption of Microbial Life to Environmental Extremes, Stan-Lotter, H. and Fendrihan, S., Eds., New York: Springer, 2017, pp. 147–199.
Fuste, E., Galisteo, G.J., Jover, L., Vinuesa, T., and Villa, T.G., Comparison of antibiotic susceptibility of old and current serratia, Future Microbiol., 2012, vol. 7, pp. 781–786.
Gilichinsky, D., Vishnivetskaya, T., Petrova, M., Spirina, E., Mamykin, V., and Rivkina, E., Bacteria in permafrost, in Psychrophiles: From Biodiversity to Biotechnology, Margesin, R., Schinner, F., Marx, J.-C., and Gerday, C., Eds., Berlin: Springer-Verlag, 2008, pt II, ch. 6, pp. 83–102.
Jacobs, G.A., History of drug-resistant microbes, in Antimicrobial Drug Resistance. Mechanisms of Drug Resistance, Mayers, D.L., Sobel, J.D., Ouellette, M., Kaye, K.S., and Marchaim, D., Eds., New York: Humana Press, 2009, vol. 1, pp. 3–8.
Katayama, T., Tanaka, M., Moriizumi, J., Nakamura, T., Brouchkov, A., Douglas, T.A., Fukuda, M., Tomita, F., and Asano, K., Phylogenetic analysis of bacteria preserved in a permafrost ice wedge for 25000 years, Appl. Environ. Microbiol., 2007, vol. 73, no. 7, pp. 2360–2363.
Kurchatova, A.N. and Rogov, V.V., Underground ice as a habitat of microorganisms, in Materialy 4-i konferentsii geokriologov Rossii (Proceedings of the 4th Conference of Russian Geocryologists), Moscow: Universitet. Kniga, 2011, pp. 345–350.
Lacelle, D., Radtke, K., Clark, I.D., Fisher, D., Lauriol, B., Utting, N., and Whyte, L.G., Geomicrobiology and occluded O2–CO2–Ar gas analyses provide evidence of microbial respiration in ancient terrestrial ground ice, Geotektonika, 2011, vol. 306, pp. 46–54.
Lane, D.J., 16S/23S rRNA sequencing, in Nucleic Acid Techniques in Bacterial Systematics, Stackebrandt, E. and Goodfellow, M., Eds., New York: John Wiley and Sons, 1991, pp. 115−175.
Mel’nikov, V.P., Rogov, V.V., Kurchatova, A.N., Brushkov, A.V., and Griva, G.I., Distribution of microorganisms in frozen soils, Kriosfera Zemli, 2011, vol. 15, no. 4, pp. 86–90.
Miller, R., Gammon, K., and Day, M.J., Antibiotic resistance among bacteria isolated from seawater and penguin fecal samples collected near Palmer Station, Antarctica, Can. Microbiol., 2009, vol. 55, pp. 37–45.
Mindlin, S.Z., Soina, V.S., Petrova, M.A., and Gorlenko, V.M., Isolation of antibiotic resistance bacterial strains from Eastern Siberia permafrost sediments, Russ. J. Genet., 2008, vol. 44, no. 1, pp. 27–34.
Nesterenko, O.A., Kvasnikov, E.I., and Nogina, T.M., Nokardiopodobnye i korinepodobnye bakterii (Nocardioform and Coryneform Bacteria), Kiev: Naukova Dumka, 1985.
Perron, G.G., Whyte, L., Turnbaugh, P.J., Hanage, W.P., Dantas, G., and Desai, M.M., Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics, PLoS One, 2013, vol. 10. e0069533.
Pikuta, E.V., Marsic, D., Bej, A., Tang, J., Krader, P., and Hoover, R.B., Carnobacterium pleistocenium sp. nov., a novel psychrotolerant, facultative anaerobe isolated from permafrost of the Fox Tunnel in Alaska, Int. Syst. Evol. Microbiol., 2005, vol. 55, pp. 473–478.
Reddy, G.S., Prakash, J.S., Vairamani, M., Prabhakar, S., Matsumoto, G.I., and Shivaji, S., Planococcus antarcticus and Planococcus psychrophilus spp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica, Extremophiles, 2002, pp. 253–261.
Romanovskaya, V.A., Tashirev, A.B., Gladka, G.V., and Tashireva, A.A., Temperature range for growth of Antarctic microorganisms, Mikrobiol. Zh., 2012, vol. 74, no. 4, pp. 13–19.
Rosenblueth, M. and Martínez-Romero, E., Bacterial endophytes and their interactions with hosts, Mol. Plant–Microbe Interac., 2006, vol. 19, no. 8, pp. 827–837.
Sanger, F., Nicklen, S., and Coulson, A.R., Dna sequencing with chain-terminating inhibitors, Proc. Natl. Acad. Sci. U. S. A., 1977, vol. 74, pp. 5463–5467.
Shivaji, S., Reddy, G.S., Suresh, K., Gupta, P., Chintalapati, S., Schumann, P., Stackebrandt, E., and Matsumoto, G.I., Psychrobacter vallis sp. nov. and Psychrobacter aquaticus sp. nov., from Antarctica, Int. J. Syst. Evol. Microbiol., 2005, vol. 55, pp. 757–762.
Steven, B., Briggs, G., McKay, Ch.P., Pollard, W.H., Greer, Ch.W., and Whyte, L.G., Characterization of the microbial diversity in a permafrost sample from the Canadian high Arctic using culture-dependent and culture-independent methods, FEMS Microbiol. Ecol., 2007, vol. 59, pp. 513–523.
Vasil’chuk, Yu.K., Geochemistry of underground ice in Russian Arctic north, Arktika Antarktika, 2016, no. 2, pp. 99–115.
Vorob’eva, E.A., Gilichinskii, D.A., and Soina, V.S., Life in the Cryosphere: view of the problem, Kriosfera Zemli, 1997, vol. 1, no. 2, pp. 60–66.
Wilhelm, R.C., Radtke, K.J., Mykytczuk, N.C.S., Greer, Ch.W., and Whyte, L.G., Life at the wedge: the activity and diversity of arctic ice wedge microbial communities, Astrobiology, 2012, vol. 12, no. 4, pp. 347–360.
Yokoi, K., Fujii, A., Kondo, M., Kuzuwa, S., Kagaya, S., Yamakawa, A., Taketo, A., and Kodaira, K.-I., Molecular properties and extracellular processing of the lipase of Staphylococcus warneri M., J. Mol. Microbiol. Biotechnol., 2012, vol. 22, pp. 167–176.
Zvyagintsev, D.G., The role of anabiosis in the life of soil microorganisms, in Tormozhenie zhiznedeyatel’nosti kletok (Inhibition of Cell Activity), Bekker, M.E., Ed., Riga: Zinatne, 1987, pp. 345–350.
Funding
This study was supported in part by the Russian Foundation for Basic Research, project no. 16-05-00296. The work on the isolation of microorganisms was supported by FASO as part of a government task (Collection of Unique and Extremophilic Microorganisms for Biotechnological Purposes) for fundamental research at the Research Center of Biotechnology (Russian Academy of Sciences).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
The authors declare that they have no conflict of interest. This article does not contain any studies involving animals or human participants performed by any of the authors.
Additional information
Translated by A. Panyushkina
Rights and permissions
About this article
Cite this article
Filippova, S.N., Surgucheva, N.A., Kolganova, T.V. et al. Isolation and Identification of Bacteria from an Ice Wedge of the Mamontova Gora Glacial Complex (Central Yakutia). Biol Bull Russ Acad Sci 46, 234–241 (2019). https://doi.org/10.1134/S1062359019030026
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1062359019030026