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Intra- and interpopulation variability of southwestern Kamchatka sockeye salmon Oncorhynchus nerka inferred from the data on single nucleotide polymorphism

  • Animal Genetics
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Abstract

The variability of 45 single nucleotide polymorphism (SNP) loci was studied in nine samples of the sockeye salmon Oncorhynchus nerka from the rivers of southwestern Kamchatka. The Wahlund effect, gametic disequilibrium at some loci, and a decrease in interpopulation genetic diversity indices observed in samples from the Bolshaya River outlet can be attributed to the samples’ heterogeneity. Partitioning of the mixed samples using some biological characteristics of the individuals led to a noticeable decrease in the frequency of these phenomena. It was demonstrated that the allelic diversity between the populations within the river accounted for the larger part of genetic variation, as compared to the differentiation between the basins. The SNP loci responsible for intra- and interpopulation differentiation of sockeye salmon from the rivers of southwestern Kamchatka were identified. Some recommendations for field population genetic studies of Asian sockeye salmon were formulated.

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Authors and Affiliations

  1. Russian Federal Research Institute of Fisheries and Oceanography, Moscow, 107140, Russia

    A. M. Khrustaleva, N. V. Klovach & O. F. Gritsenko

  2. School of Aquatic and Fishery Sciences, University of Washington, Seattle, 355020, USA

    J. E. Seeb

Authors
  1. A. M. Khrustaleva
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  2. N. V. Klovach
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  3. O. F. Gritsenko
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  4. J. E. Seeb
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Correspondence to A. M. Khrustaleva.

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Original Russian Text © A.M. Khrustaleva, N.V. Klovach, O.F. Gritsenko, J.E. Seeb, 2014, published in Genetika, 2014, Vol. 50, No. 7, pp. 840–852.

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Khrustaleva, A.M., Klovach, N.V., Gritsenko, O.F. et al. Intra- and interpopulation variability of southwestern Kamchatka sockeye salmon Oncorhynchus nerka inferred from the data on single nucleotide polymorphism. Russ J Genet 50, 736–748 (2014). https://doi.org/10.1134/S1022795414070096

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  • DOI: https://doi.org/10.1134/S1022795414070096

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