Abstract
Mastitis caused by Staphylococcus aureus is a worldwide problem in dairy farms, in part because of the pathogenicity of the bacteria, biofilm formation, and mechanisms of antimicrobial resistance that make the disease difficult to diagnose and treat, which is typically done with the use of beta-lactam antibiotics. The aim of the present study was to determine the virulence and resistance factors of S. aureus isolates from subclinical mastitis, blaZ + /mecA − /mecC − , resistant and sensitive to oxacillin. All isolates were classified as CC97 by MLST analysis, a clonal complex well adapted to the mammary gland and although STAU23 and STAU73 were resistant to oxacillin while STAU32 and STAU78 were sensitive, the genomic analysis identified only the blaZ operon corresponding to resistance to beta-lactams. However, the presence of the sdrC gene was revealed exclusively in resistant isolates, an important adhesin in the colonization process that potentiates pathogenicity in S. aureus. In addition, resistance islands (REIs) were identified in these isolates, suggesting more conserved REIs. In the analysis of SNPs throughout the genome, mutations were found in the trmB and smpB genes of the resistant isolates and in the murD and rimM genes of the sensitive isolates. This study highlights the potential benefit of genome-wide characterization tools to identify molecular mechanisms of S. aureus in bovine mastitis.
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Data supporting the findings of this study are available upon request.
References
Kumar N, Manimaran A, Kumaresan A, Jeyakumar S, Sreela L, Mooventhan P, Sivaram M (2017) Mastitis effects on reproductive performance in dairy cattle: a review. Trop Anim Heal Prod 2017 494 [Internet]. [cited 2021 Nov 5];49(4):663–73. Available from: https://link.springer.com/article/10.1007/s11250-017-1253-4
Argaw A (2016) Review on Epidemiology of Clinical and Subclinical Mastitis on Dairy Cows. Food Sci Qual Manag 52: 56–65. https://www.iiste.org/Journals/index.php/FSQM/article/view/31012 . Accessed 22 Jan 2024
Gonçalves JL, Kamphuis C, Martins CMMR, Barreiro JR, Tomazi T, Gameiro AH, Hogeveen H, dos Santos MV (2018) Bovine subclinical mastitis reduces milk yield and economic return. Livest Sci 1(210):25–32
Arciola CR, Campoccia D, Ravaioli S, Montanaro L (2015) Polysaccharide intercellular adhesin in biofilm: structural and regulatory aspects. Front Cell Infect Microbiol 5:7. https://doi.org/10.3389/FCIMB.2015.00007
Russi NB, Maito J, Dieser SA, Renna MS, Signorini ML, Camussone C, Neder VE, Pol M, Tirante L, Odierno LM, Calvinho LF (2015) Comparison of phenotypic tests for detecting penicillin G resistance with presence of blaZ gene in Staphylococcus aureus isolated from bovine intramammary infections. J Dairy Res 82(3):317–321
Ruegg PL, Oliveira L, Jin W, Okwumabua O (2015) Phenotypic antimicrobial susceptibility and occurrence of selected resistance genes in gram-positive mastitis pathogens isolated from Wisconsin dairy cows. J Dairy Sci 98:4521–4534. https://doi.org/10.3168/jds.2014-9137
Takayama Y, Tanaka T, Oikawa K, Fukano N, Goto M, Takahashi T (2018) Prevalence of blaZ gene and performance of phenotypic tests to detect penicillinase in staphylococcus aureus isolates from Japan. Ann Lab Med 38:155–159. https://doi.org/10.3343/alm.2018.38.2.155
El Feghaly RE, Stamm JE, Fritz SA, Burnham CAD (2012) Presence of the blaZ beta-lactamase gene in isolates of Staphylococcus aureus that appear penicillin susceptible by conventional phenotypic methods. Diagn Microbiol Infect Dis 74:388–393. https://doi.org/10.1016/j.diagmicrobio.2012.07.013
Rocha GD, Nogueira JF, dos Santos MVG, Boaventura JA, Soares RAN, Gouveia JS, da Costa MM, Gouveia GV (2022) Impact of polymorphisms in blaZ, blaR1 and blaI genes and their relationship with β-lactam resistance in S. aureus strains isolated from bovine mastitis. Microb Pathog 165:105453. https://doi.org/10.1016/J.MICPATH.2022.105453
da Costa Krewer C, Santos Amanso E, Gouveia GV, de Lima Souza R, da Costa MM, Aparecido Mota R (2015) Resistance to antimicrobials and biofilm formation in Staphylococcus spp. isolated from bovine mastitis in the Northeast of Brazil. Trop Anim Health Prod 47:511–518. https://doi.org/10.1007/s11250-014-0752-9
Sawant AA, Gillespie BE, Oliver SP (2009) Antimicrobial susceptibility of coagulase-negative Staphylococcus species isolated from bovine milk. Vet Microbiol 134:73–81. https://doi.org/10.1016/j.vetmic.2008.09.006
Paterson GK, Larsen AR, Robb A, Edwards GE, Pennycott TW, Foster G, Mot D, Hermans K, Baert K, Peacock SJ, Parkhill J, Zadoks RN, Holmes MA (2012) The newly described mecA homologue, mecALGA251, is present in methicillin-resistant Staphylococcus aureus isolates from a diverse range of host species. J Antimicrob Chemother 67:2809–2813. https://doi.org/10.1093/JAC/DKS329
Clinical and Laboratory Standards Institute (2015) VET01S Performance standards for antimicrobial disk and dilution susceptibility tests for bacteria isolated from animals. Pennsylvania, United States
Clinical and Laboratory Standards Institute (2018) M100-performance standards for antimicrobial susceptibility testing. Pennsylvania, United States
Regitano LCA, Niciura SCM, Ibelli AMG, Gouveia JJS (2007) Protocolos em biologia molecular aplicada à produção animal. https://www.alice.cnptia.embrapa.br/alice/bitstream/doc/48302/4/PROCILCAR2007.00415.pdf. Accessed 22 Jan 2024
Brown J, Pirrung M, Mccue LA (2017) FQC Dashboard: Integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. Bioinformatics 33:3137–3139. https://doi.org/10.1093/bioinformatics/btx373
Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120. https://doi.org/10.1093/bioinformatics/btu170
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19(5):455–477
Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: Quality assessment tool for genome assemblies. Bioinformatics 29:1072–1075. https://doi.org/10.1093/bioinformatics/btt086
Seemann T (2014) Prokka: Rapid prokaryotic genome annotation. Bioinformatics 30:2068–2069. https://doi.org/10.1093/bioinformatics/btu153
Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Pontén T, Ussery DW, Aarestrup FM, Lund O (2012) Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol 50:1355–1361. https://doi.org/10.1128/JCM.06094-11
Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG (2004) eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data. J Bacteriol 186:1518. https://doi.org/10.1128/JB.186.5.1518-1530.2004
Soares SC, Geyik H, Ramos RTJ, de Sá PHCG, Barbosa EGV, Baumbach J, Figueiredo HCP, Miyoshi A, Tauch A, Silva A, Azevedo V (2016) GIPSy: genomic island prediction software. J Biotechnol 20(232):2–11
Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics [Internet]. Aug 8 [cited 2021 Nov 9];12(1):1–10. Available from: https://link.springer.com/articles/https://doi.org/10.1186/1471-2164-12-402
Smith EM, Green LE, Medley GF, Bird HE, Fox LK, Schukken YH, Kruze J V., Bradley AJ, Zadoks RN, Dowson CG (2005) Multilocus sequence typing of intercontinental bovine Staphylococcus aureus isolates. J Clin Microbiol 43:4737–4743. https://doi.org/10.1128/JCM.43.9.4737-4743.2005
Mello PL, Riboli DFM, Martins L de A, Brito MAVP, Victória C, Romero LC, Cunha M de, LR de S da (2020) Staphylococcus spp. Isolated from Bovine Subclinical Mastitis in Different Regions of Brazil: Molecular Typing and Biofilm Gene Expression Analysis by RT-qPCR. Antibiot 9:888. https://doi.org/10.3390/antibiotics9120888
da Silva RR, Guilhermino GMS, de Oliveira Neto BL, de Lira Neto JB (2021) A interiorização da covid-19 nos municípios do estado de pernambuco, nordeste do brasil. Rev Bras Saude Matern Infant [Internet]. [cited 2021 May 27];21:S121–32. Available from: https://doi.org/10.1590/1806-9304202100S100006
Hryniewicz MM, Garbacz K (2017) Borderline oxacillin-resistant staphylococcus aureus (BORSA) - a more common problem than expected? J Med Microbiol [Internet]. [cited 2022 Jan 31];66(10):1367–73. Available from: https://www.microbiologyresearch.org/content/journal/jmm/10.1099/jmm.0.000585
Hryniewicz MM, Garbacz K (2017) Borderline oxacillin-resistant staphylococcus aureus (BORSA) - a more common problem than expected? J Med Microbiol [Internet]. [cited 2021 Nov 15];66(10):1367–73. Available from: https://www.microbiologyresearch.org/content/journal/jmm/10.1099/jmm.0.000585
Foster TJ, Geoghegan JA, Ganesh VK, Höök M (2013) Adhesion, invasion and evasion: the many functions of the surface proteins of Staphylococcus aureus. Nat Rev Microbiol 121(12)49–62. https://doi.org/10.1038/nrmicro3161
Cucarella C, Tormo MÁ, Úbeda C, Trotonda MP, Monzón M, Peris C, Amorena B, Lasa Í, Penadés JR (2004) Role of Biofilm-Associated Protein Bap in the Pathogenesis of Bovine Staphylococcus aureus. Infect Immun 72:2177–2185. https://doi.org/10.1128/IAI.72.4.2177-2185.2004
Jenkins A, An Diep B, Mai TT, Vo NH, Warrener P, Suzich J, Kendall Stover C, Sellman BR (2015) Differential expression and roles of Staphylococcus aureus virulence determinants during colonization and disease. MBio 6: 10–1128. https://doi.org/10.1128/MBIO.02272-14
Wang J, Zhang M, Wang M, Zang J, Zhang X, Hang T (2021) Structural insights into the intermolecular interaction of the adhesin SdrC in the pathogenicity of Staphylococcus aureus. Acta Crystallogr Sect F Struct Biol Commun 1(77):47–53
Burnside K, Lembo A, Reyes M de los, Iliuk A, BinhTran NT, Connelly JE, Lin WJ, Schmidt BZ, Richardson AR, Fang FC, Tao WA, Rajagopal L (2010) Regulation of hemolysin expression and virulence of staphylococcus aureus by a serine/threonine kinase and phosphatase. PLoS One [Internet]. [cited 2021 Nov 1];5(6):e11071. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0011071
Singh M, Singh A, Sharma A (2014) Production and applications of an N-terminally-truncated recombinant beta-haemolysin from Staphylococcus aureus. Biologicals 42(4):191–198
Keiler KC (2008) Biology of trans-translation. Annu Rev Microbiol 62:133–151. https://doi.org/10.1146/ANNUREV.MICRO.62.081307.162948
Huang Y, Alumasa JN, Callaghan LT, Baugh RS, Rae CD, Keiler KC, McGillivray SM (2019) A small-molecule inhibitor of trans-translation synergistically interacts with cathelicidin antimicrobial peptides to impair survival of Staphylococcus aureus. Antimicrobial agents and chemotherapy 63: 10–1128. https://doi.org/10.1128/aac.02362-18
Parimelzaghan A, Anbarasu A, Ramaiah S (2016) Gene network analysis of metallo beta lactamase family proteins indicates the role of gene partners in antibiotic resistance and reveals important drug targets. J Cell Biochem [Internet]. [cited 2022 Feb 7];117(6):1330–9. Available from: https://onlinelibrary.wiley.com/doi/full/10.1002/jcb.25422
Nair D, Memmi G, Hernandez D, Bard J, Beaume M, Gill S, Francois P, Cheung AL (2011) Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain. J Bacteriol [Internet]. [cited 2022 Feb 7];193(9):2332–5. Available from: https://journals.asm.org/doi/abs/10.1128/JB.00027-11
Azam MA, Jupudi S, Saha N, Paul RK (2019) Combining molecular docking and molecular dynamics studies for modelling Staphylococcus aureus MurD inhibitory activity. SAR QSAR Environ Res [Internet]. [cited 2022 Feb 7];30(1):1–20. Available from: https://www.tandfonline.com/doi/abs/10.1080/1062936X.2018.1539034
Acknowledgements
This study was carried out at the Laboratory of Microbiology and Animal Immunology, Laboratory of Genetics and Biotechnology, and the Multiuser Laboratory Open Access Center for Genomic Analysis (CALanGO) of the Universidade Federal do Vale do São Francisco, located in the Agricultural Sciences Campus of UNIVASF in Petrolina-PE, Brazil. We also thank the Research Group on Microorganisms and Biotechnology Applied to Agriculture in the Semiarid Region for the equipment and reagents granted.
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This study was funded by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior- CAPES.
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Gabriela Dias Rocha: data curation; formal analysis; methodology; validation; writing—review and editing; writing—original draft. João José de Simoni Gouveia: conceptualization, methodology, supervision, writing—review and editing. Mateus Matiuzzi da Costa: conceptualization, methodology, supervision, writing—review and editing. Riani Ananda Nunes Soares: writing—review and editing. Gisele Veneroni Gouveia: conceptualization, methodology, supervision, writing—review and editing.
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Rocha, G.D., de Simoni Gouveia, J.J., da Costa, M.M. et al. Resistance and virulence in Staphylococcus aureus by whole-genome sequencing: a comparative approach in blaZ-positive isolates. Braz J Microbiol 55, 955–967 (2024). https://doi.org/10.1007/s42770-023-01243-4
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DOI: https://doi.org/10.1007/s42770-023-01243-4