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Topoisomerase II as a target for repurposed antibiotics in Candida albicans: an in silico study

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Abstract

Fluoroquinolines, the widely used antibacterial antibiotics, have been shown to interact with human DNA topoisomerases supporting their use as repurposed cancer drugs in humans. In this communication molecular docking of eleven Fluoroquinolines against predicted structure of Candida albicans DNA Topoisomerase II is reported for the first time. C. albicans topoisomerase II structure prediction was done by using homology modeling tool. Ligand preparation and molecular docking with C. albicans topoisomerase II were done by using Autodock tool. These antibiotics formed hydrogen bond with good binding affinity at ARG 841, GLN803, ALA840 amino acid residues in the active site of C. albicans Topoisomerase II. We hypothesize that DNA toposiomerases may be the targets of Fluroquinoline group of antibiotics in C. albicans causing inhibition of growth.

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References

  • Aldred J, Kerns J, Osherof N (2014) Mechanism of quinolone action and resistance. Biochemistry 53:1565–1574

    Article  CAS  Google Scholar 

  • Anand S, Somasundaram S, Doble M, Paramasivan C (2011) Docking studies on novel analogues of 8 methoxyfluoroquinolones against GyrA mutants of Mycobacterium tuberculosis. BMC StructBiol 11(1):1–13

    Article  Google Scholar 

  • Bertozzi D, Iurlaro R, Sordet O, Marinello J, Zaffaroni N, Capranico G (2011) Characterization of novel antisense HIF-1α transcripts in human cancers. Cell Cycle 10(18):3189–3197

    Article  CAS  Google Scholar 

  • Bertozzi D, Marinello J, Manzo S, Fornari F, Gramantieri L, Capranico G (2014) The natural inhibitor of DNA topoisomerase I, camptothecin, modulates HIF-1α activity by changing miR expression patterns in human cancer cells. Mol Cancer Ther 13(1):239–248

    Article  CAS  Google Scholar 

  • Deren Y, Özdek S, Kalkanci A, Akyürek N, Hasanreisoglu B (2010) Comparison of antifungal efficacies of moxifloxacin, liposomal amphotericin B, and combination treatment in experimental Candida albicansendophthalmitis in rabbits. Can J Microbiol 56(1):1–7

    Article  CAS  Google Scholar 

  • Drwal MN, Agama K, Pommier Y, Griffith R (2013) Development of purely structure-based pharmacophores for the Topoisomerase I-DNA-ligand binding pocket. J Comput Aided Mol Des 27(12):1037–1049

    Article  CAS  Google Scholar 

  • Hande K (2008) Topoisomerase II inhibitors. Update Cancer Ther 3(1):13–26

    Article  Google Scholar 

  • Jadhav A, Karuppayil M (2017) Molecular docking studies on thirteen fluoroquinolines with human topoisomerase II a and b. In Silico Pharmacol 5(1):1–12

    Article  CAS  Google Scholar 

  • Jadhav A, Bansode B, Phule D, Amruta S, Rajendra P, Gade W, Kharat K, Karuppayil M (2017) The antibacterial agent, moxifloxacin inhibits virulence factors of Candida albicans through multitargeting. World J MicrobiolBiotechnol 33(5):1–9

    Google Scholar 

  • Keating G, Scott L (2004) Moxifloxacin. Drugs 64(20):2347–2377

    Article  CAS  Google Scholar 

  • Kelley L, Mezulis S, Yates C, Wass M, Sternberg M (2015) The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc 10(6):845–858

    Article  CAS  Google Scholar 

  • Kumar A, Bora U (2014) Molecular docking studies of curcumin natural derivatives with DNA topoisomerase I and II-DNA complexes. InterdiscipSciComput Life Sci 6(4):285–291

    CAS  Google Scholar 

  • Kwok S, Schelenz S, Wang X, Steverding D (2010) In vitro effect of DNA topoisomerase inhibitors on Candida albicans. Med Mycol 48(1):155–160

    Article  CAS  Google Scholar 

  • Laskowski R, MacArthur M, Thornton JM (2001) PROCHECK: validation of protein structure coordinates. In: International tables of crystallography, vol F. Crystallography of biological macromolecules. Kluwer Academic Publishers, The Netherlands, pp 722–725

  • Maraki S, Lionakis S, Ntaoukakis M, Barbounakis E, Ntasis E, Kofteridis D, Samonis G (2011) Effects of levofloxacin, moxifloxacin and prulifloxacin on murine gut colonization by Candida albicans. Med Mycol 49(4):419–423

    Article  CAS  Google Scholar 

  • Mdluli K, Ma Z (2007) Mycobacterium tuberculosis DNA gyrase as a target for drug discovery. Infect Disord Drug Targets 7(2):159–168

    Article  CAS  Google Scholar 

  • Morris G, Goodsell D, Halliday R, Huey R, Hart W, Belew R, Olson A (1998) Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J ComputChem 19(14):1639–1662

    CAS  Google Scholar 

  • Nitiss JL (2009) Targeting DNA topoisomerase II in cancer chemotherapy. Nat Rev Cancer 9:338–350

    Article  CAS  Google Scholar 

  • Ozdek S, Miller D, Flynn P, Flynn H (2006) In vitro antifungal activity of the fourth generation fluoroquinolones against Candida isolates from human ocular infections. Ocular ImmunolInflamm 14(6):347–351

    Article  CAS  Google Scholar 

  • Pommier Y (2013) Drugging topoisomerases: lessons and challenges. ACS ChemBiol 8:82–95

    CAS  Google Scholar 

  • Shalit I, Horev-Azaria L, Fabian I, Blau H, Kariv N, Shechtman I, Kletter Y (2002) Immunomodulatory and protective effects of moxifloxacin against Candida albicans-induced bronchopneumonia in mice injected with cyclophosphamide. Antimicrob Agent Chemother 46(8):2442–2449

    Article  CAS  Google Scholar 

  • Skok Z, Zidar N, Kikelj D, Ilaš J, (2020) Dual inhibitors of human DNA topoisomerase II and other cancer-related targets. J Med Chem 63:884–890

    Article  CAS  Google Scholar 

  • Stergiopoulou T, Meletiadis J, Sein T, Papaioannidou P, Tsiouris I, Roilides E, Walsh T (2009) Comparative pharmacodynamic interaction analysis between ciprofloxacin, moxifloxacin and levofloxacin and antifungal agents against Candida albicans and Aspergillus fumigatus. J AntimicrobChemother 63(2):343–348

    CAS  Google Scholar 

  • Steverding D, Evans P, Msika L, Riley B, Wallington J, Schelenz S (2012) In vitro antifungal activity of DNA topoisomerase inhibitors. Med Mycol 50(3):333–336

    Article  CAS  Google Scholar 

  • Wang S, Miller W, Milton J, Vicker N, Stewart A, Charlton P, Denny WA (2002) Structure–activity relationships for analogues of the phenazine-based dual topoisomerase I/II inhibitor XR11576. Bioorg Med Chem Lett 12(3):415–418

    Article  Google Scholar 

  • Yalcin B, Kalkanci A, Gürelik F, Fidan I, Kustimur S, Ozdek S (2010) In vitro synergistic effect of moxifloxacin and amphotericin B combination against Candida strains. MikrobBult 44(1):65–70

    CAS  Google Scholar 

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Acknowledgements

AKJ and SMK is thankful to DY Patil Education Society (Deemed to be University), Kolhapur, 416006, Maharashtra, India for providing funding support for Research.

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Correspondence to Sankunny Mohan Karuppayil.

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Jadhav, A.K., Karuppayil, S.M. Topoisomerase II as a target for repurposed antibiotics in Candida albicans: an in silico study. In Silico Pharmacol. 9, 24 (2021). https://doi.org/10.1007/s40203-021-00082-1

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