Abstract
Background
Machine learning (ML) tools have become invaluable in potential drug candidate screening, formulation development, manufacturing, and characterization of advanced drug delivery systems. These tools are part of the Industry 4.0 revolution, which plays a vital role in microparticle and microfluidics, alongside mRNA-LNP vaccines, and stability in advanced protein therapeutics.
Area covered
This study summarizes the application of ML tools in drug discovery, formulation development, and optimization, in addition to continuous manufacturing and characterization of advanced drug delivery systems such as biopharmaceutical formulations including mRNA-LNP vaccines, microfluidics, and microparticle dosage forms. Furthermore, it includes stability concerns, and regulatory, technical, and ethical issues along with future perspectives.
Expert opinion
ML tools are essential for revolutionizing the drug development cycle, where it has been implemented to screen vast databases for drug discovery, optimize formulations, adopt Industry 4.0, and continuous manufacturing concepts, including characterizing and predicting the stability of biopharmaceuticals. However, a gap between regulatory authorities and industries is felt due to current ethical and technical issues in the drug approval process. The vast available databases can be used to train the ML models and such pre-trained ML models can address these concerns. Additionally, these pre-trained tools can predict stability, meaning that the optimization of the formulation is possible, which can save lots of time, efforts, and costs. Moreover, a multidisciplinary approach between ML tools and the drug delivery system promotes digital twin, which can lead to improved patient compliance and efficacy.
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Data availability
The datasets generated during and/or analysed during the current study are available from the corresponding authors on reasonable request.
References
Acharjee A, Larkman J, Xu Y, Cardoso VR, Gkoutos GV (2020) A random forest based biomarker discovery and power analysis framework for diagnostics research. BMC Med Genom 13:1–14
Ahn JC, Connell A, Simonetto DA, Hughes C, Shah VH (2021) Application of artificial intelligence for the diagnosis and treatment of liver diseases. Hepatology 73:2546–2563
Alalaween WH, Mahfouf M, Salman AD (2016) Predictive modelling of the granulation process using a systems-engineering approach. Powder Technol 302:265–274
Angello NH, Rathore V, Beker W, Wołos A, Jira ER, Roszak R, Wu TC, Schroeder CM, Aspuru-Guzik A, Grzybowski BA (2022) Closed-loop optimization of general reaction conditions for heteroaryl Suzuki-Miyaura coupling. Science 378:399–405
Arano-Martinez JA, Martínez-González CL, Salazar MI, Torres-Torres C (2022) A framework for biosensors assisted by multiphoton effects and machine learning. Biosensors 12:710
Arden NS, Fisher AC, Tyner K, Lawrence XY, Lee SL, Kopcha M (2021) Industry 4.0 for pharmaceutical manufacturing: preparing for the smart factories of the future. Int J Pharm 602:120554
Banerjee D, Rajput D, Banerjee S, Saharan VA (2022) Artificial intelligence and its applications in drug discovery, formulation development, and healthcare. In: Saharan VA (ed) Computer aided pharmaceutics and drug delivery An application guide for students and researchers of pharmaceutical sciences. Springer, Singapore
Bannigan P, Aldeghi M, Bao Z, Häse F, Aspuru-Guzik A, Allen C (2021) Machine learning directed drug formulation development. Adv Drug Deliv Rev 175:113806
Bellocchio F, Gervasoni F, Rosenberger J, Usvayt L, Cioffi M, Garbelli M, Sagova M, Nikam M, Jirka T, Stuard S (2023) Development and usability assessment of an AI-enhanced dashboard supporting AVF management in clinical practice. Nephrol Dial Transpl 38:gfad063c_3226
Bevers S, Kooijmans SA, Van De Velde E, Evers MJ, Seghers S, Gitz-Francois JJ, Van Kronenburg NC, Fens MH, Mastrobattista E, Hassler L (2022) mRNA-LNP vaccines tuned for systemic immunization induce strong antitumor immunity by engaging splenic immune cells. Mol Ther 30:3078–3094
Biopharmatrend (2023) AI drug discovery: key trends and developments in pharmaceutical industry, https://www.biopharmatrend.com/post/615-pharmaceutical-artificial-intelligence-key-developments-in-2022. Accessed 12 July 2023
Blaschke T, Arús-Pous J, Chen H, Margreitter C, Tyrchan C, Engkvist O, Papadopoulos K, Patronov A (2020) Reinvent 2.0: an AI tool for de novo drug design. J Chem Inf Model 60:5918–5922
Blenke EO, Örnskov E, Schöneich C, Nilsson G, Volkin DB, Mastrobattista E, Almarsson Ö, Crommelin DJ (2022) The storage and in-use stability of mRNA vaccines and therapeutics: not a cold case. J Pharm Sci 112:386–403
Brenner JS, Mitragotri S, Muzykantov VR (2021) Red blood cell hitchhiking: a novel approach for vascular delivery of nanocarriers. Annu Rev Biomed Eng 23:225–248
Cai L, Lu C, Xu J, Meng Y, Wang P, Fu X, Zeng X, Su Y (2021) Drug repositioning based on the heterogeneous information fusion graph convolutional network. Brief 22:bbab319
Carpenter KA, Huang X (2018) Machine learning-based virtual screening and its applications to Alzheimer’s drug discovery: a review. Curr Pharm Des 24:3347–3358
Casian T, Nagy B, Kovács B, Galata DL, Hirsch E, Farkas A (2022) Challenges and opportunities of implementing data fusion in process analytical technology-a review. Molecules 27:4846
Castillo-Hair SM, Seelig G (2021) Machine learning for designing next-generation mRNA therapeutics. Acc Chem Res 55:24–34
Chan HS, Shan H, Dahoun T, Vogel H, Yuan S (2019) Advancing drug discovery via artificial intelligence. Trends Pharmacol Sci 40:592–604
Chaudhary S, Muthudoss P, Madheswaran T, Paudel A, Gaikwad V (2023) Chapter 15 - Artificial intelligence (AI) in drug product designing, development, and manufacturing. In: Philip A, Shahiwala A, Rashid M, Faiyazuddin Md (eds) A handbook of artificial intelligence in drug delivery. Academic Press, Cambridge, pp 395–442
Chen H, Engkvist O, Wang Y, Olivecrona M, Blaschke T (2018) The rise of deep learning in drug discovery. Drug Discov Today 23:1241–1250
Chen P, Ansari MJ, Bokov D, Suksatan W, Rahman ML, Sarjadi MS (2022) A review on key aspects of wet granulation process for continuous pharmaceutical manufacturing of solid dosage oral formulations. Arab J Chem 15:103598
Chokshi N, Chakraborty S (2023) Chapter 22 - Artificial intelligence from a regulatory perspective: drug delivery and devices. In: Philip A, Shahiwala A, Rashid M, Faiyazuddin Md (eds) A handbook of artificial intelligence in drug delivery. Academic Press, Cambridge, pp 581–607
Cocos A, Fiks AG, Masino AJ (2017) Deep learning for pharmacovigilance: recurrent neural network architectures for labeling adverse drug reactions in twitter posts. J Am Med Inform Assoc 24:813–821
Cohen IG, Evgeniou T, Gerke S, Minssen T (2020) The European artificial intelligence strategy: implications and challenges for digital health. Lancet 2:e376–e379
Damiati SA (2020) Digital pharmaceutical sciences. AAPS PharmSciTech 21:206
Daniel S, Kis Z, Kontoravdi C, Shah N (2022) Quality by Design for enabling RNA platform production processes. Trends Biotechnol 40:1213–1228
Daniels MJ, Linero A, Roy J (2023) Bayesian nonparametrics for causal inference and missing data, vol 124. CRC Press, Boca Raton
Deng Z, Zuo X (2023) Distributed online learning algorithm for noncooperative games over unbalanced digraphs. IEEE Trans Neural Netw Learn Syst. https://doi.org/10.1109/TNNLS.2023.3290049
Deo RC (2015) Machine Learning in Medicine. Circulation 132:1920–1930
Deon M, Dos Santos J, De Andrade DF, Beck RCR (2022) A critical review of traditional and advanced characterisation tools to drive formulators towards the rational development of 3D printed oral dosage forms. Int J Pharm 628:122293
Dong Y, Yang T, Xing Y, Du J, Meng Q (2023) Data-driven modeling methods and techniques for pharmaceutical processes. Processes 11:2096
Durga Prasad Reddy R, Sharma V (2020) Additive manufacturing in drug delivery applications: A review. Int J Pharm 589:119820
Ekins S, Freundlich JS, Clark AM, Anantpadma M, Davey RA, Madrid P (2015) Machine learning models identify molecules active against the Ebola virus in vitro. F1000Res 4:1–15
Fahle S, Prinz C, Kuhlenkötter B (2020) Systematic review on machine learning (ML) methods for manufacturing processes – Identifying artificial intelligence (AI) methods for field application. Procedia CIRP 93:413–418
Fei J, Yong J, Hui Z, Yi D, Hao L, Sufeng M, Yilong W, Qiang D, Haipeng S, Yongjun W (2017) Artificial intelligence in healthcare: past, present and future. Stroke Vasc Neurol 2:230
Generative A (2023) First drug discovered and designed with generative AI enters Phase II trials, with first patients dosed, https://www.genengnews.com/topics/artificial-intelligence/insilicos-ai-candidate-for-ipf-doses-first-patient-in-phase-ii. Accessed 07 July 2023
Gentile F, Yaacoub JC, Gleave J, Fernandez M, Ton A-T, Ban F, Stern A, Cherkasov A (2022) Artificial intelligence–enabled virtual screening of ultra-large chemical libraries with deep docking. Nat Protoc 17:672–697
Gentiluomo L, Roessner D, Frieß W (2020) Application of machine learning to predict monomer retention of therapeutic proteins after long term storage. Int J Pharm 577:119039
Gudeppu M, Balasubramanian J, Bakthavachalam P, Chokkalingam L, Shanmugam PST (2020) Biocompatibility and toxicology. Trends Med. https://doi.org/10.1016/B978-0-12-820960-8.00007-1
Hahn S-J, Kim S, Choi YS, Lee J, Kang J (2022) Prediction of type 2 diabetes using genome-wide polygenic risk score and metabolic profiles: a machine learning analysis of population-based 10-year prospective cohort study. EBioMedicine 86:1–12
Hariry RE, Barenji RV, Paradkar A (2020) From Industry 4.0 to Pharma 4.0 In: Chaudhery Mustansar Hussain & Paolo Di Sia (eds) Handbook of smart materials, technologies, and devices, Springer, Cham
Harrer S, Shah P, Antony B, Hu J (2019) Artificial intelligence for clinical trial design. Trends Pharmacol Sci 40:577–591
Haywood AL, Redshaw J, Hanson-Heine MW, Taylor A, Brown A, Mason AM, GäRtner T, Hirst JD (2021) Kernel methods for predicting yields of chemical reactions. J Chem Inf Model 62:2077–2092
Helaimia R (2023) Cloud computing in higher education institutions: pros and cons. Int J Adv Eng Res Sci 7:132–141
Helleckes LM, Hemmerich J, Wiechert W, Von Lieres E, Grünberger A (2022) Machine learning in bioprocess development: from promise to practice. Trends Biotechnol 41:817–835
Hu J, Li W, Zheng X, Tian Z, Zhang Y (2023) Prior knowledge-based residuals shrinkage prototype networks for cross-domain fault diagnosis. Meas Sci Technol 34:105011
Ingle RG, Fang W-J (2021) Prefilled dual chamber devices (DCDs)–promising high-quality and convenient drug delivery system. Int J Pharm 597:120314
Ismail HY, Singh M, Darwish S, Kuhs M, Shirazian S, Croker DM, Khraisheh M, Albadarin AB, Walker GM (2019) Developing ANN-kriging hybrid model based on process parameters for prediction of mean residence time distribution in twin-screw wet granulation. Powder Technol 343:568–577
Ismail HY, Singh M, Shirazian S, Albadarin AB, Walker GM (2020) Development of high-performance hybrid ANN-finite volume scheme (ANN-FVS) for simulation of pharmaceutical continuous granulation. Chem Eng Res Des 163:320–326
Ivanenkov YA, Polykovskiy D, Bezrukov D, Zagribelnyy B, Aladinskiy V, Kamya P, Aliper A, Ren F, Zhavoronkov A (2023) Chemistry42: an AI-driven platform for molecular design and optimization. J Chem Inf Model 63:695–701
Jamal S, Khubaib M, Gangwar R, Grover S, Grover A, Hasnain SE (2020) Artificial intelligence and machine learning based prediction of resistant and susceptible mutations in Mycobacterium tuberculosis. Sci Rep 10:5487
Jan Z, Ahamed F, Mayer W, Patel N, Grossmann G, Stumptner M, Kuusk A (2023) Artificial intelligence for industry 4.0: Systematic review of applications, challenges, and opportunities. Expert Syst Appl 216:119456
Jang HY, Song J, Kim JH, Lee H, Kim I-W, Moon B, Oh JM (2022) Machine learning-based quantitative prediction of drug exposure in drug-drug interactions using drug label information. NPJ Digit Med 5:88
Jariwala N, Putta CL, Gatade K, Umarji M, Ruhina Rahman SN, Pawde DM, Sree A, Kamble AS, Goswami A, Chakraborty P, Shunmugaperumal T (2023) Intriguing of pharmaceutical product development processes with the help of artificial intelligence and deep/machine learning or artificial neural network. J Drug Deliv Sci 87:104751
Ji Y, Gao Y, Bao R, Li Q, Liu D, Sun Y, Ye Y (2023) Prediction of COVID-19 patients' emergency room revisit using multi-source transfer learning. arXiv 2306:17257
Jiang Z, Rieck C, Bück A, Tsotsas E (2020) Modeling of inter- and intra-particle coating uniformity in a Wurster fluidized bed by a coupled CFD-DEM-Monte Carlo approach. Chem Eng Sci 211:115289
Jyothi VGSS, Bulusu R, Rao BVK, Pranothi M, Banda S, Bolla PK, Kommineni N (2022) Stability characterization for pharmaceutical liposome product development with focus on regulatory considerations: An update. Int J Pharm 624:122022
Kamran SA (2023) Deep representation learning with limited data for biomedical image synthesis, segmentation, and detection, Dissertation, University of Nevada
Kaplun D, Bogachev MI, Singh DPK, Sarkar R (2023) Bringing together data-and knowledge-driven solutions for a better understanding and effective diagnostics of neurological disorders. Front Neuroinform 17:1229945
Karl AT, Essex S, Wisnowski J, Rushing H, Adsurgo L (2022) A Workflow for Lipid Nanoparticle (LNP) Formulation Optimization Using Designed Mixture-Process Experiments and Self-Validated Ensemble Models (SVEM). arXiv:11264
Kejzlar V, Hu J (2023) Introducing variational inference in statistics and data science curriculum. Am Stat. https://doi.org/10.1080/00031305.2023.2232006
Khanal SK, Tarafdar A, You S (2023) Artificial intelligence and machine learning for smart bioprocesses. Bioresour Technol 375:128826
Koch M, Duigou T, Faulon J-L (2019) Reinforcement learning for bioretrosynthesis. ACS Synth Biol 9:157–168
Kolluri S, Lin J, Liu R, Zhang Y, Zhang W (2022) Machine learning and artificial intelligence in pharmaceutical research and development: a review. AAPS J 24:19
Kon E, Elia U, Peer D (2022) Principles for designing an optimal mRNA lipid nanoparticle vaccine. Curr Opin Biotechnol 73:329–336
Koromina M, Pandi M-T, Patrinos GP (2019) Rethinking drug repositioning and development with artificial intelligence, machine learning, and omics. Omics: A J Integr Biol 23:539–548
Korteby Y, Kristó K, Sovány T, Regdon G (2018) Use of machine learning tool to elucidate and characterize the growth mechanism of an in-situ fluid bed melt granulation. Powder Technol 331:286–295
Krittanawong C, Zhang H, Wang Z, Aydar M, Kitai T (2017) Artificial intelligence in precision cardiovascular medicine. J Am Coll Cardiol 69:2657–2664
Kumar S, Gopi T, Harikeerthana N, Gupta MK, Gaur V, Krolczyk GM, Wu C (2023) Machine learning techniques in additive manufacturing: a state of the art review on design, processes and production control. J Intell Manuf 34:21–55
Lalmuanawma S, Hussain J, Chhakchhuak L (2020) Applications of machine learning and artificial intelligence for Covid-19 (SARS-CoV-2) pandemic: a review. Chaos Solit Fractals 139:110059
Landin M (2017) Artificial intelligence tools for scaling up of high shear wet granulation process. J Pharm Sci 106:273–277
Lawrence XY, Raw A, Wu L, Capacci-Daniel C, Zhang Y, Rosencrance S (2019) FDA’s new pharmaceutical quality initiative: knowledge-aided assessment & structured applications. Int J Pharm 1:100010
Li V, Wooldridge T, Wang X (2022) Transferability of quantum adversarial machine learning. In: Proceedings of 7th International Congress on Information and Communication Technology. Springer, London, 805–814
Litjens G, Kooi T, Bejnordi BE, AaA S, Ciompi F, Ghafoorian M, Van Der Laak JA, Van Ginneken B, Sánchez CI (2017) A survey on deep learning in medical image analysis. Med Image Anal 42:60–88
Liu H, Zhang W, Nie L, Ding X, Luo J, Zou L (2019) Predicting effective drug combinations using gradient tree boosting based on features extracted from drug-protein heterogeneous network. BMC Bioinform 20:1–12
Liu T, Shi K, Li W (2020) Deep learning methods improve linear B-cell epitope prediction. BioData Min 13:1–13
Liu P, Chen G, Zhang J (2022) A review of liposomes as a drug delivery system: current status of approved products, regulatory environments, and future perspectives. Molecules 27:1372
Liyanage YW, Zois DS (2023) Interpretability in the context of sequential cost-sensitive feature acquisition. In: ICASSP 2023-IEEE International Conference on Acoustics, Speech and Signal Processing. IEEE, pp 1–5
Maharjan R, Jeong SH (2022) Application of different models to evaluate the key factors of fluidized bed layering granulation and their influence on granule characteristics. Powder Technol 408:117737
Maharjan R, Hada S, Lee JE, Han H-K, Kim KH, Seo HJ, Foged C, Jeong SH (2023) Comparative study of lipid nanoparticle-based mRNA vaccine bioprocess with machine learning and combinatorial artificial neural network-design of experiment approach. Int J Pharm 640:123012
Mak K-K, Pichika MR (2019) Artificial intelligence in drug development: present status and future prospects. Drug Discov Today 24:773–780
Mäki-Lohiluoma E, Säkkinen N, Palomäki M, Winberg O, Ta HX, Heikkinen T, Kiljunen E, Kauppinen A (2021) Use of machine learning in prediction of granule particle size distribution and tablet tensile strength in commercial pharmaceutical manufacturing. Int J Pharm 609:121146
Mao S, Li S, Zhang Y, Long L, Peng J, Cao Y, Mao JZ, Qi X, Xin Q, San G (2023) A highly efficient needle-free-injection delivery system for mRNA-LNP vaccination against SARS-CoV-2. Nano Today 48:101730
Marcato A, Santos JE, Boccardo G, Viswanathan H, Marchisio D, Prodanović M (2023) Prediction of local concentration fields in porous media with chemical reaction using a multi scale convolutional neural network. Chem Eng J 455:140367
Marcou G, Aires De Sousa J, Latino DA, De Luca A, Horvath D, Rietsch V, Varnek A (2015) Expert system for predicting reaction conditions: the Michael reaction case. J Chem Inf Model 55:239–250
Masic D, Fee K, Bell HL, Case M, Witherington G, Lansbury S, Ojeda-Garcia J, Mcdonald D, Schwab C, Van Delft FW (2023) Hyperactive CREB subpopulations increase during therapy in pediatric B-lineage acute lymphoblastic leukemia. Haematologica 108:981
Mcdonald I, Murray SM, Reynolds CJ, Altmann DM, Boyton RJ (2021) Comparative systematic review and meta-analysis of reactogenicity, immunogenicity and efficacy of vaccines against SARS-CoV-2. NPJ Vaccines 6:74
Mei S, Zhang K (2021) A machine learning framework for predicting drug–drug interactions. Sci Rep 11:17619
Mekni N, Coronnello C, Langer T, Rosa MD, Perricone U (2021) Support vector machine as a supervised learning for the prioritization of novel potential sars-cov-2 main protease inhibitors. Int J Mol Sci 22:7714
Mikita JS, Mitchel J, Gatto NM, Laschinger J, Tcheng JE, Zeitler EP, Swern AS, Flick ED, Dowd C, Lystig T, Calvert SB (2021) Determining the suitability of registries for embedding clinical trials in the united states: a project of the clinical trials transformation initiative. Ther Innov Regul Sci 55:6–18
Mohammed NH, Al-Rashid SZ (2023) Effective of various vaccines on antibody response and genetic immune using deep learning method. Util Math 120:330–344
Moreno-Díaz R, Pichler F, Quesada-Arencibia A (2023) Computer aided systems theory–EUROCAST 2022: 18th International conference, Springer Nature, Canaria, 13789
Mowbray M, Vallerio M, Perez-Galvan C, Zhang D, Chanona ADR, Navarro-Brull FJ (2022) Industrial data science–a review of machine learning applications for chemical and process industries. React Chem Eng 7:1471–1509
Muhindo D, Elkanayati R, Srinivasan P, Repka MA, Ashour EA (2023) Recent advances in the applications of additive manufacturing (3D printing) in drug delivery: a comprehensive review. AAPS PharmSciTech 24:57
Muñiz Castro B, Elbadawi M, Ong JJ, Pollard T, Song Z, Gaisford S, Pérez G, Basit AW, Cabalar P, Goyanes A (2021) Machine learning predicts 3D printing performance of over 900 drug delivery systems. J Control Release 337:530–545
Naderi Sohi A, Kiani J, Arefian E, Khosrojerdi A, Fekrirad Z, Ghaemi S, Zim MK, Jalili A, Bostanshirin N, Soleimani M (2021) Development of an mRNA-LNP vaccine against SARS-CoV-2: evaluation of immune response in mouse and Rhesus Macaque. Vaccines 9:1007
Nagy B, Galata DL, Farkas A, Nagy ZK (2022) Application of artificial neural networks in the process analytical technology of pharmaceutical manufacturing—a review. AAPS J 24:74
Narayanan H, Dingfelder F, Butté A, Lorenzen N, Sokolov M, Arosio P (2021) Machine learning for biologics: opportunities for protein engineering, developability, and formulation. Trends Pharmacol Sci 42:151–165
Ng YL, Salim CK, Chu JJH (2021) Drug repurposing for COVID-19: approaches, challenges and promising candidates. Pharmacol Ther 228:107930
Ogami C, Tsuji Y, Seki H, Kawano H, To H, Matsumoto Y, Hosono H (2021) An artificial neural network− pharmacokinetic model and its interpretation using Shapley additive explanations. CPT Pharmacomet Syst 10:760–768
Oh SH, Park J, Lee SJ, Kang S, Mo J (2022) Reinforcement learning-based expanded personalized diabetes treatment recommendation using South Korean electronic health records. Expert Syst Appl 206:117932
Pan Y, Zhang H, Chen Y, Gong X, Yan J, Zhang H (2023) Applications of hyperspectral imaging technology combined with machine learning in quality control of traditional chinese medicine from the perspective of artificial intelligence: a review. Crit Rev Anal. https://doi.org/10.1080/10408347.2023.2207652
Patel V, Shah M (2022) Artificial intelligence and machine learning in drug discovery and development. Intell Med 2:134–140
Paul D, Sanap G, Shenoy S, Kalyane D, Kalia K, Tekade RK (2021) Artificial intelligence in drug discovery and development. Drug Discov Today 26:80
Pillai N, Dasgupta A, Sudsakorn S, Fretland J, Mavroudis PD (2022) Machine learning guided early drug discovery of small molecules. Drug Discov Today 27:2209–2215
Pirrung SM, Van Der Wielen LA, Van Beckhoven RF, Van De Sandt EJ, Eppink MH, Ottens M (2017) Optimization of biopharmaceutical downstream processes supported by mechanistic models and artificial neural networks. Biotechnol Prog 33:696–707
Pirrung SM, Berends C, Backx AH, Van Beckhoven RFWC, Eppink MHM, Ottens M (2019) Model-based optimization of integrated purification sequences for biopharmaceuticals. Chem Eng Sci 3:100025
Popova M, Isayev O, Tropsha A (2018) Deep reinforcement learning for de novo drug design. Sci Adv 4:eaap7885
Portela RM, Varsakelis C, Richelle A, Giannelos N, Pence J, Dessoy S, Von Stosch M (2021) When is an in silico representation a digital twin? A biopharmaceutical industry approach to the digital twin concept. Digital Twins Tools and Concepts for Smart Biomanufacturing. Springer, Taipei, pp 35–55
Priya S, Tripathi G, Singh DB, Jain P, Kumar A (2022) Machine learning approaches and their applications in drug discovery and design. Chem Biol Drug Des 100:136–153
Pšeničnik A, Reberšek R, Slemc L, Godec T, Kranjc L, Petković H (2022) Simple and reliable in situ CRISPR-Cas9 nuclease visualization tool is ensuring efficient editing in Streptomyces species. J Microbiol Methods 200:106545
Puranik A, Dandekar P, Jain R (2022) Exploring the potential of machine learning for more efficient development and production of biopharmaceuticals. Biotechnol Prog 38:e3291
Purushotham S, Meng C, Che Z, Liu Y (2018) Benchmarking deep learning models on large healthcare datasets. J Biomed Inform 83:112–134
Ramasamy S, Nirmala K (2020) Disease prediction in data mining using association rule mining and keyword based clustering algorithms. Int J Comput Appl 42:1–8
Rathore AS, Nikita S, Thakur G, Mishra S (2023) Artificial intelligence and machine learning applications in biopharmaceutical manufacturing. Trends Biotechnol 41:497–510
Ribeiro MT, Singh S, Guestrin C (2016) "Why should i trust you?": Explaining the predictions of any classifier. In: Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, San Francisco, 1135–1144
Rivare A (2023) Artificial intelligence and digitalization in pharmaceutical regulatory affairs, Dissertation, University of Helsinki
Roces CB, Lou G, Jain N, Abraham S, Thomas A, Halbert GW, Perrie Y (2020) Manufacturing considerations for the development of lipid nanoparticles using microfluidics. Pharmaceutics 12:1095
Rue-Albrecht K, Mcgettigan PA, Hernández B, Nalpas NC, Magee DA, Parnell AC, Gordon SV, Machugh DE (2016) GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data. BMC Bioinform 17:1–12
Sarkar C, Das B, Rawat VS, Wahlang JB, Nongpiur A, Tiewsoh I, Lyngdoh NM, Das D, Bidarolli M, Sony HT (2023) Artificial intelligence and machine learning technology driven modern drug discovery and development. Int J Mol Sci 24:2026
Schoenmaker L, Witzigmann D, Kulkarni JA, Verbeke R, Kersten G, Jiskoot W, Crommelin DJA (2021) mRNA-lipid nanoparticle COVID-19 vaccines: structure and stability. Int J Pharm 601:120586
Serov N, Vinogradov V (2022) Artificial intelligence to bring nanomedicine to life. Adv Drug Deliv Rev 184:114194
Shang C, You F (2019) Data analytics and machine learning for smart process manufacturing: Recent advances and perspectives in the big data era. Engineering 5:1010–1016
Sharma A, Virmani T, Pathak V, Sharma A, Pathak K, Kumar G, Pathak D (2022) Artificial intelligence-based data-driven strategy to accelerate research, development, and clinical trials of COVID vaccine. Biomed Res Int 2022:1–16
Shi J-Y, Wang X, Ding G-Y, Dong Z, Han J, Guan Z, Ma L-J, Zheng Y, Zhang L, Yu G-Z (2021) Exploring prognostic indicators in the pathological images of hepatocellular carcinoma based on deep learning. Gut 70:951–961
Shirazian S, Kuhs M, Darwish S, Croker D, Walker GM (2017) Artificial neural network modelling of continuous wet granulation using a twin-screw extruder. Int J Pharm 521:102–109
Simões MF, Silva G, Pinto AC, Fonseca M, Silva NE, Pinto RMA, Simões S (2020) Artificial neural networks applied to quality-by-design: From formulation development to clinical outcome. Eur J Pharm Biopharm 152:282–295
Singh M, Shirazian S, Ranade V, Walker GM, Kumar A (2022) Challenges and opportunities in modelling wet granulation in pharmaceutical industry—a critical review. Powder Technol 403:117380
Smola AJ, Schölkopf B (2004) A tutorial on support vector regression. Stat Comput 14:199–222
Sokolović N, Ajanović M, Badić S, Banjanin M, Brkan M, Čusto N, Stanić B, Sirbubalo M, Tucak A, Vranić E (2020) Predicting the outcome of granulation and tableting processes using different artificial intelligence methods. In: Badnjevic A, Škrbić R, Pokvić LG (eds) CMBEBIH 2019. Springer International Publishing, Cham, pp 499–504
Sousa AS, Serra J, Estevens C, Costa R, Ribeiro AJ (2023) A quality by design approach in oral extended release drug delivery systems: where we are and where we are going? J Pharm Investig 53:269–306
Soysal E, Wang J, Jiang M, Wu Y, Pakhomov S, Liu H, Xu H (2018) CLAMP–a toolkit for efficiently building customized clinical natural language processing pipelines. J Am Med Inform Assoc 25:331–336
Tamasi MJ, Gormley AJ (2022) Biologic formulation in a self-driving biomaterials lab. Cell Rep 3:101041
Tenchov R, Bird R, Curtze AE, Zhou Q (2021) Lipid Nanoparticles─From Liposomes to mRNA Vaccine Delivery, a Landscape of Research Diversity and Advancement. ACS Nano 15:16982–17015
Tian F, Cai L, Liu C, Sun J (2022) Microfluidic technologies for nanoparticle formation. Lab Chip 22:512–529
Tian Z, Zhang Z, Yang Z, Jin R, Dai H (2023) Distributed learning over networks with graph-attention-based personalization. IEEE Trans Signal Process 71:2071–2086
Uddin MJ, Ahamad MM, Hoque MN, MaA W, Aktar S, Alotaibi N, Alyami SA, Kabir MA, Moni MA (2023) A comparison of machine learning techniques for the detection of type-2 diabetes mellitus: experiences from bangladesh. Information 14:376
Undey C (2021) AI in Process Automation SLAS. Technol 26:1–2
Usfda (2017) Proposed regulatory framework for modifications to artificial intelligence/machine learning (AI/ML)-based software as a medical device (SaMD)-discussion paper and request for feedback, https://www.fda.gov/regulatory-information/search-fda-guidance-documents/deciding-when-submit-510k-software-change-existing-device. Accessed 18 July 2023
Vatansever S, Schlessinger A, Wacker D, Kaniskan HÜ, Jin J, Zhou MM, Zhang B (2021) Artificial intelligence and machine learning-aided drug discovery in central nervous system diseases: State-of-the-arts and future directions. Med Res Rev 41:1427–1473
Vemula D, Jayasurya P, Sushmitha V, Kumar YN, Bhandari V (2023) CADD, AI and ML in drug discovery: a comprehensive review. Eur J Pharm Sci 181:106324
Vogelaar A, Marcotte S, Cheng J, Oluoch B, Zaro J (2023) Use of microfluidics to prepare lipid-based nanocarriers. Pharmaceutics 15:1053
Walsh I, Myint M, Nguyen-Khuong T, Ho YS, Ng SK, Lakshmanan M (2022) Harnessing the potential of machine learning for advancing “quality by design” in biomanufacturing. Mabs. https://doi.org/10.1080/19420862.2021.2013593
Wang W, Feng S, Ye Z, Gao H, Lin J, Ouyang D (2022) Prediction of lipid nanoparticles for mRNA vaccines by the machine learning algorithm. Acta Pharm Sin 12:2950–2962
Wang X, Jin Y, Long M, Wang J, Jordan MI (2019) Transferable normalization: towards improving transferability of deep neural networks. In: Adv Neural Inf. NeurIPS 2019, pp
Wang B, Xie W, Martagan T, Akcay A (2021) Reinforcement learning under model risk for biomanufacturing fermentation control. arXiv:1–38
Whitley J, Zwolinski C, Denis C, Maughan M, Hayles L, Clarke D, Snare M, Liao H, Chiou S, Marmura T (2022) Development of mRNA manufacturing for vaccines and therapeutics: mRNA platform requirements and development of a scalable production process to support early phase clinical trials. Transl Res 242:38–55
Xu Y, Ma S, Cui H, Chen J, Xu S, Wang K, Varley A, Lu RXZ, Bo W, Li B (2023) AGILE Platform: A deep learning-powered approach to accelerate LNP development for mRNA delivery. bioRxiv:543345
Xun S, Li D, Zhu H, Chen M, Wang J, Li J, Chen M, Wu B, Zhang H, Chai X (2022) Generative adversarial networks in medical image segmentation: a review. Comput Biol 140:105063
Yang C-T, Kristiani E, Leong YK, Chang J-S (2023) Big data and machine learning driven bioprocessing – recent trends and critical analysis. Bioresour Technol 372:128625
Yoo S-D, Kim JY, Han S-K, Lee B-H, Choi DH, Park E-S (2023) Development of prediction model with machine learning in continuous twin screw granulation. J Pharm Investig 53:702–722
Yu C, Liu J, Nemati S, Yin G (2021) Reinforcement learning in healthcare: a survey. ACM Comput Surv 55:1–36
Zafar MB, Valera I, Rodriguez MG, Gummadi KPG (2017) Fairness beyond disparate treatment & disparate impact: Learning classification without disparate mistreatment. In: Proceedings of the 26th International Conference on World Wide Web. International World Wide Web Conferences Steering Committee, Perth, pp 1171–1180
Zawbaa HM, Szlȩk J, Grosan C, Jachowicz R, Mendyk A (2016) Computational intelligence modeling of the macromolecules release from PLGA microspheres—Focus on feature selection. PLoS ONE 11:e0157610
Zhang X-C, Wu C-K, Yang Z-J, Wu Z-X, Yi J-C, Hsieh C-Y, Hou T-J, Cao D-S (2021) MG-BERT: leveraging unsupervised atomic representation learning for molecular property prediction. Brief 22:bbab152
Zhang H, Li P, Meng F, Fan W, Xue Z (2023) MapReduce-based distributed tensor clustering algorithm. Neural Comput Appl. https://doi.org/10.1007/s00521-023-08415-1
Zhao Y, Chen J (2022) A survey on differential privacy for unstructured data content. ACM Comput Surv 54:1–28
Zheng S, Zhao J (2020) A new unsupervised data mining method based on the stacked autoencoder for chemical process fault diagnosis. Comput Chem Eng 135:106755
Zhu Y, Shen R, Vuong I, Reynolds RA, Shears MJ, Yao Z-C, Hu Y, Cho WJ, Kong J, Reddy SK, Murphy SC, Mao H-Q (2022) Multi-step screening of DNA/lipid nanoparticles and co-delivery with siRNA to enhance and prolong gene expression. Nat Commun 13:4282
Zitnik M, Agrawal M, Leskovec J (2018) Modeling polypharmacy side effects with graph convolutional networks. Bioinformatics 34:i457–i466
Acknowledgements
This work was partially supported by National Research Foundation of Korea (NRF) grants funded by the Korean government (MSIT) (NRF-2018R1A5A2023127 and NRF-2019R1A2C1083911).
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National Research Foundation of Korea (NRF), NRF-2018R1A5A2023127,Seong Hoon Jeong, NRF-2019R1A2C1083911, Ki Hyun Kim
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Maharjan, R., Lee, J.C., Lee, K. et al. Recent trends and perspectives of artificial intelligence-based machine learning from discovery to manufacturing in biopharmaceutical industry. J. Pharm. Investig. 53, 803–826 (2023). https://doi.org/10.1007/s40005-023-00637-8
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DOI: https://doi.org/10.1007/s40005-023-00637-8