Abstract
Protein phosphorylation is a key regulatory factor in all aspects of plant biology; most regulatory pathways are governed by the reversible phosphorylation of proteins. To better understand the role that phosphorylated proteins play in a woody model plant, we performed a systemic analysis of the phosphoproteome from Populus leaves using high accuracy NanoLC–MS/MS in combination with biochemical enrichments using strong cation exchange chromatography and titanium dioxide chromatography. We identified 104 phosphopeptides from 94 phosphoproteins and determined 111 phosphorylation sites including 93 occurring on serine residues and 18 on threonine residues. The identified phosphoproteins are involved in a wide variety of metabolic processes. Among these identified phosphoproteins, 68 phosphorylation sites (72 %) were located outside of conserved domains. The identified phosphopeptides share a common phosphorylation motif of pS/pT-P/D-S/A. These data suggest that the Populus metabolism and gene regulation machinery are major targets of phosphorylation. To our knowledge, this is the first gel-free, large-scale phosphoproteomics analysis in woody plants. The identified phosphorylation sites will be a valuable resource for many fields of plant biology, and information gained from the study will provide a better understanding of protein phosphorylation.
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Abbreviations
- IMAC:
-
Immobilized metal affinity
- TiO2 :
-
Titanium dioxide
- NanoLC–ESI–MS/MS:
-
Nano, liquid chromatography-tandem mass spectrometry
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Acknowledgments
We are grateful for financial support from the State Key Program of National Natural Science of China (Grant No. 31030017), National Basic Research Priorities Programme (2009CB119102), Fundamental Research Funds for the Central Universities (DL09EA01) and Project of the Natural Sciences Foundation of Heilongjiang Province (Grant C201010) and in part form “The fund for sponsoring the excellent doctor degree dissertation in Northeast Forestry University” (Grap 09).
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D.-L. Ning and J.-W. Liu contributed equally to this work.
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Liu, J., Ning, D., Zhao, G. et al. Large-scale analysis of protein phosphorylation in Populus leaves. J. Plant Biochem. Biotechnol. 23, 410–420 (2014). https://doi.org/10.1007/s13562-013-0225-7
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DOI: https://doi.org/10.1007/s13562-013-0225-7