Skip to main content
Log in

A cold-active cellulase produced from Exiguobacterium sibiricum K1 for the valorization of agro-residual resources

  • Original Article
  • Published:
Biomass Conversion and Biorefinery Aims and scope Submit manuscript

Abstract

In the cold regions, the problem of efficient degradation of agro-residual waste can be overwhelmed by bioprospecting the extremozymes from cold-adapted microorganisms. The compost habitat provides a hostile environment that harbours an enormous group of microbial communities with potential hydrolytic activities. Exploring these microorganisms would be beneficial to avert the crop residual resources to fulfil the future resource demand. In the present study, a cold-adapted bacterium, Exiguobacterium sibiricum K1, with cellulase activity, was isolated from the compost sample of Sikkim, India. Under optimized conditions, the maximum cellulase production achieved was 3.8 U/mL at 15 ℃ and pH 5. The bacterial cold-active cellulase was investigated to degrade four agro-residual wastes, namely sugar cane bagasse, wheat bran, corn stover, and oil-extracted lemongrass. In scanning electron micrographs, the enzyme-treated wastes showed structural breakages in the form of pores and cracks. However, no significant changes were observed in the untreated groups. Furthermore, the hydrolysate in gas chromatography–mass spectrometry showed the release of thirteen products in both sugar cane bagasse and wheat bran enzymolysis. However, twelve products were found in corn stover and fourteen in lemongrass degradation. The products were categorized into alcohol, saccharide, acid, ketone, ester, alkane, aldehyde, and furan. Additionally, the hydrolysate showed the availability of several phytonutrients such as Fe, Mn, Cu, Zn, Ca, and K in enzyme-treated test groups compared to the untreated waste. Hence, applying hydrolysate to soil may help enhance soil quality by providing nutrients essential to plant growth. Thus, microbial intervention could be a better treatment strategy to manage agro-residual waste in cold regions and resource recovery that will contribute to an eco-friendly environment and sustainable bio-economy in the future.

Graphical abstract

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  1. Onwosi CO, Igbokwe VC, Odimba JN et al (2017) Composting technology in waste stabilization: on the methods, challenges and future prospects. J Environ Manage 190:140–157. https://doi.org/10.1016/j.jenvman.2016.12.051

    Article  Google Scholar 

  2. Ramachandra TV, Bharath HA, Kulkarni G, Han SS (2018) Municipal solid waste: generation, composition and GHG emissions in Bangalore, India. Renew Sustain Energy Rev 82:1122–1136. https://doi.org/10.1016/j.rser.2017.09.085

    Article  Google Scholar 

  3. Kumari S, Manyapu V, Kumar R (2022) Recent advances in composting and vermicomposting techniques in the cold region: resource recovery, challenges, and way forward. Adv Org Waste Manag 131–154. https://doi.org/10.1016/B978-0-323-85792-5.00005-8

  4. Dhar H, Kumar S, Kumar R (2017) A review on organic waste to energy systems in India. Bioresour Technol 245:1229–1237. https://doi.org/10.1016/j.biortech.2017.08.159

    Article  Google Scholar 

  5. Bhuvaneshwari S, Hettiarachchi H, Meegoda JN (2019) Crop residue burning in India: Policy challenges and potential solutions. Int J Environ Res Public Health 16:832. https://doi.org/10.3390/ijerph16050832

    Article  Google Scholar 

  6. Gadde B, Bonnet S, Menke C, Garivait S (2009) Air pollutant emissions from rice straw open field burning in India, Thailand and the Philippines. Environ Pollut 157:1554–1558. https://doi.org/10.1016/j.envpol.2009.01.004

    Article  Google Scholar 

  7. Sarsaiya S, Jain A, Kumar Awasthi S et al (2019) Microbial dynamics for lignocellulosic waste bioconversion and its importance with modern circular economy, challenges and future perspectives. Bioresour Technol 291:121905. https://doi.org/10.1016/j.biortech.2019.121905

    Article  Google Scholar 

  8. Jiang C, Cheng Y, Zang H et al (2020) Biodegradation of lignin and the associated degradation pathway by psychrotrophic Arthrobacter sp. C2 from the cold region of China. Cellulose 27:1423–1440. https://doi.org/10.1007/s10570-019-02858-3

    Article  Google Scholar 

  9. Chen P, Anderson E, Addy M et al (2018) Breakthrough technologies for the biorefining of organic solid and liquid wastes. Engineering 4:574–580. https://doi.org/10.1016/j.eng.2018.07.004

    Article  Google Scholar 

  10. Li Y, Han Y, Zhang Y et al (2020) Factors affecting gaseous emissions, maturity, and energy efficiency in composting of livestock manure digestate. Sci Total Environ 731:139157. https://doi.org/10.1016/j.scitotenv.2020.139157

    Article  Google Scholar 

  11. Guerriero G, Hausman JF, Strauss J et al (2016) Lignocellulosic biomass: biosynthesis, degradation, and industrial utilization. Eng Life Sci 16:1–16. https://doi.org/10.1002/elsc.201400196

    Article  Google Scholar 

  12. Gupta SK, Kataki S, Chatterjee S et al (2020) Cold adaptation in bacteria with special focus on cellulase production and its potential application. J Clean Prod 258:120351. https://doi.org/10.1016/j.jclepro.2020.120351

    Article  Google Scholar 

  13. Li D, Feng L, Liu K et al (2016) Optimization of cold-active CMCase production by psychrotrophic Sphingomonas sp. FLX-7 from the cold region of China. Cellulose 23:1335–1347. https://doi.org/10.1007/s10570-016-0859-4

    Article  Google Scholar 

  14. Sun S, Zhang Y, Liu K et al (2020) Insight into biodegradation of cellulose by psychrotrophic bacterium Pseudomonas sp. LKR-1 from the cold region of China: optimization of cold-active cellulase production and the associated degradation pathways. Cellulose 27:315–333. https://doi.org/10.1007/s10570-019-02798-y

    Article  Google Scholar 

  15. Steiner E, Margesin R (2020) Production and partial characterization of a crude cold-active cellulase (CMCase) from Bacillus mycoides AR20-61 isolated from an Alpine forest site. Ann Microbiol 70:67. https://doi.org/10.1186/s13213-020-01607-3

    Article  Google Scholar 

  16. Kumar R, Singh D, Swarnkar MK et al (2015) Complete genome sequence of Arthrobacter sp. ERGS1:01, a putative novel bacterium with prospective cold active industrial enzymes, isolated from East Rathong glacier in India. J Biotechnol 214:139–140. https://doi.org/10.1016/j.jbiotec.2015.09.025

    Article  Google Scholar 

  17. Kumar R, Singh D, Swarnkar MK et al (2015) Genome assembly of Chryseobacterium polytrichastri ERMR1:04, a psychrotolerant bacterium with cold active proteases, isolated from east rathong glacier in India. Genome Announc 3:2014–2015. https://doi.org/10.1128/genomeA.01305-15

    Article  Google Scholar 

  18. Kumar R, Singh D, Swarnkar MK et al (2016) Complete genome sequence of Arthrobacter alpinus ERGS4:06, a yellow pigmented bacterium tolerant to cold and radiations isolated from Sikkim Himalaya. J Biotechnol 220:86–87. https://doi.org/10.1016/j.jbiotec.2016.01.016

    Article  Google Scholar 

  19. Kumar R, Acharya V, Singh D, Kumar S (2018) Strategies for high-altitude adaptation revealed from high-quality draft genome of non-violacein producing Janthinobacterium lividum ERGS5:01. Stand Genomic Sci 13:1–13. https://doi.org/10.1186/s40793-018-0313-3

    Article  Google Scholar 

  20. Kumar R, Acharya V, Mukhia S et al (2019) Complete genome sequence of Pseudomonas frederiksbergensis ERDD5:01 revealed genetic bases for survivability at high altitude ecosystem and bioprospection potential. Genomics 111:492–499. https://doi.org/10.1016/j.ygeno.2018.03.008

    Article  Google Scholar 

  21. Kumar A, Mukhia S, Kumar N et al (2020) A broad temperature active lipase purified from a psychrotrophic bacterium of Sikkim Himalaya with potential application in detergent formulation. Front Bioeng Biotechnol 8:1–16. https://doi.org/10.3389/fbioe.2020.00642

    Article  Google Scholar 

  22. Sánchez ÓJ, Ospina DA, Montoya S (2017) Compost supplementation with nutrients and microorganisms in composting process. Waste Manag 69:136–153. https://doi.org/10.1016/j.wasman.2017.08.012

    Article  Google Scholar 

  23. Kasana RC, Pandey CB (2018) Exiguobacterium: an overview of a versatile genus with potential in industry and agriculture. Crit Rev Biotechnol 38:141–156. https://doi.org/10.1080/07388551.2017.1312273

    Article  Google Scholar 

  24. Borker SS, Thakur A, Kumar S et al (2021) Correction to: Comparative genomics and physiological investigation supported safety, cold adaptation, efficient hydrolytic and plant growth-promoting potential of psychrotrophic Glutamicibacter arilaitensis LJH19, isolated from night-soil compost (BMC Ge. BMC Genomics 22:1–17. https://doi.org/10.1186/s12864-021-07681-4

    Article  Google Scholar 

  25. Mukhia S, Kumar A, Kumar R (2021) Generation of antioxidant peptides from soy protein isolate through psychrotrophic Chryseobacterium sp. derived alkaline broad temperature active protease. Lwt 143:111152. https://doi.org/10.1016/j.lwt.2021.111152

    Article  Google Scholar 

  26. Wang C, Dong D, Wang H et al (2016) Metagenomic analysis of microbial consortia enriched from compost: new insights into the role of Actinobacteria in lignocellulose decomposition. Biotechnol Biofuels 9:1–17. https://doi.org/10.1186/s13068-016-0440-2

    Article  Google Scholar 

  27. Wang W-K, Liang C-M (2021) Enhancing the compost maturation of swine manure and rice straw by applying bioaugmentation. Sci Rep 11:1–11. https://doi.org/10.1038/s41598-021-85615-6

    Google Scholar 

  28. Zang H, Du X, Wang J et al (2020) Insight into cold-active xylanase production and xylan degradation pathways in psychrotrophic Acinetobacter sp. HC4 from the cold region of China. Cellulose 27:7575–7589. https://doi.org/10.1007/s10570-020-03286-4

    Article  Google Scholar 

  29. Vermelho AB, Couri S (2013) Methods to determine enzymatic activity. Bentham Science Publishers. https://doi.org/10.2174/97816080530011130101

  30. Schleifer KH (2009) Classification of bacteria and archaea: past, present and future. Syst Appl Microbiol 32:533–542. https://doi.org/10.1016/j.syapm.2009.09.002

    Article  Google Scholar 

  31. Kumar R, Nongkhlaw M, Acharya C, Joshi SR (2013) Uranium (U)-tolerant bacterial diversity from U ore deposit of domiasiat in North-East India and its prospective utilisation in bioremediation. Microbes Environ 28:33–41. https://doi.org/10.1264/jsme2.ME12074

    Article  Google Scholar 

  32. Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31:426–428. https://doi.org/10.1021/ac60147a030

    Article  Google Scholar 

  33. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254

    Article  Google Scholar 

  34. Thite VS (2020) Crude xylanases and pectinases from Bacillus spp. along with commercial cellulase formulate an efficient tailor-made cocktail for sugarcane bagasse saccharification. 286–300. https://doi.org/10.1007/s12155-019-10050-5

  35. Campos LMA, Moura HOMA, Cruz AJG et al (2020) Response surface methodology (RSM) for assessing the effects of pretreatment, feedstock, and enzyme complex association on cellulose hydrolysis. Biomass Convers Biorefinery. https://doi.org/10.1007/s13399-020-00756-4

    Article  Google Scholar 

  36. Kumar A, Mukhia S, Kumar R (2021) Production, characterisation, and application of exopolysaccharide extracted from a glacier bacterium Mucilaginibacter sp. ERMR7:07. Process Biochem 113:27–36. https://doi.org/10.1016/j.procbio.2021.12.018

    Article  Google Scholar 

  37. Tandon HLS (2005) Methods of analysis of soils, plants, waters, fertilisers & organic manures. Fertiliser Development and Consultation Organisation

  38. Melo IS, Zucchi TD, Silva RE et al (2014) Isolation and characterization of cellulolytic bacteria from the Stain house Lake, Antarctica. Folia Microbiol (Praha) 59:303–306. https://doi.org/10.1007/s12223-013-0295-x

    Article  Google Scholar 

  39. Zheng G, Lu Z, Li J et al (2020) Screening and performance of L-14, A novel, highly efficient and low temperature-resistant cellulose-degrading strain. Int J Agric Biol Eng 13:247–254. https://doi.org/10.25165/j.ijabe.20201301.5128

    Article  Google Scholar 

  40. Liang Y-L, Zhang Z, Wu M, et al (2014) Isolation, screening, and identification of cellulolytic bacteria from natural reserves in the subtropical region of China and optimization of cellulase production by Paenibacillus terrae ME27–1. Biomed Res Int. https://doi.org/10.1155/2014/512497

  41. Chen L, Wei Y, Shi M et al (2020) Statistical optimization of a cellulase from Aspergillus glaucus CCHA for hydrolyzing corn and rice straw by RSM to enhance yield of reducing sugar. Biotechnol Lett 42:583–595. https://doi.org/10.1007/s10529-020-02804-5

    Article  Google Scholar 

  42. Gil A (2021) Current insights into lignocellulose related waste valorization. Chem Eng J Adv 8:100186. https://doi.org/10.1016/j.ceja.2021.100186

    Article  Google Scholar 

  43. Kumar A, & Gupta N (2018) Potential of lignocellulosic materials for production of ethanol. Biofuels: Greenh Gas Mitig Glob Warm 271–290. https://doi.org/10.1007/978-81-322-3763-1_15

  44. Schedl A, Korntner P, Zweckmair T et al (2016) Detection of Cellulose-Derived Chromophores by Ambient Ionization-MS. Anal Chem 88:1253–1258. https://doi.org/10.1021/acs.analchem.5b03646

    Article  Google Scholar 

  45. Lattuati-Derieux A, Bonnassies-Termes S, Lavédrine B (2006) Characterisation of compounds emitted during natural and artificial ageing of a book. Use of headspace-solid-phase microextraction/gas chromatography/mass spectrometry. J Cult Herit 7:123–133. https://doi.org/10.1016/j.culher.2006.02.004

    Article  Google Scholar 

  46. Li L, Li K, Wang K et al (2014) Efficient production of 2,3-butanediol from corn stover hydrolysate by using a thermophilic Bacillus licheniformis strain. Bioresour Technol 170:256–261. https://doi.org/10.1016/j.biortech.2014.07.101

    Article  Google Scholar 

  47. Yang TH, Rathnasingh C, Lee HJ, Seung D (2014) Identification of acetoin reductases involved in 2,3-butanediol pathway in Klebsiella oxytoca. J Biotechnol 172:59–66. https://doi.org/10.1016/j.jbiotec.2013.12.007

    Article  Google Scholar 

  48. Fouda F (2021) Production of biogas by using different pretreatments of rice straw under aerobic and semi aerobic conditions. Ann Agric Sci Moshtohor 59:349–360. https://doi.org/10.21608/assjm.2021.194823

    Article  Google Scholar 

  49. Li YH, Bai YX, Pan CM et al (2015) Effective conversion of maize straw wastes into bio-hydrogen by two-stage process integrating H2 fermentation and MECs. Environ Sci Pollut Res 22:18394–18403. https://doi.org/10.1007/s11356-015-5016-3

    Article  Google Scholar 

  50. Kaur T, Rana KL, Kour D, et al (2020) Microbe-mediated biofortification for micronutrients: present status and future challenges. Microb Biotechnol and Bioeng 1–17. https://doi.org/10.1016/B978-0-12-820528-0.00002-8

  51. Mikula K, Izydorczyk G, Skrzypczak D, et al (2020) Controlled release micronutrient fertilizers for precision agriculture. Sci Total Environ 712. https://doi.org/10.1016/j.scitotenv.2019.136365

  52. Bradáčová K, Weber NF, Morad-Talab N et al (2016) Micronutrients (Zn/Mn), seaweed extracts, and plant growth-promoting bacteria as cold-stress protectants in maize. Chem Biol Technol Agric 3:1–10. https://doi.org/10.1186/s40538-016-0069-1

    Article  Google Scholar 

  53. Kobayashi T, Nozoye T, Nishizawa NK (2019) Iron transport and its regulation in plants. Free Radic Biol Med 133:11–20. https://doi.org/10.1016/j.freeradbiomed.2018.10.439

    Article  Google Scholar 

  54. Larbi A, Kchaou H, Gaaliche B et al (2020) Supplementary potassium and calcium improves salt tolerance in olive plants. Sci Hortic (Amsterdam) 260:108912

    Article  Google Scholar 

Download references

Acknowledgements

We are thankful to the Department of Forest, Govt. of Sikkim, and the Sikkim State Council of Science and Technology for their support in sample collection. The authors duly acknowledge Mrs. Vijaylata Pathania for GC-MS, Dr. Avnesh Kumari for SEM analysis, and Mr. Ramdeen Prasad for AAS analysis. This manuscript represents CSIR-IHBT communication no 5113.

Funding

SK is financially supported by the NMHS project of MoEF&CC (sanction no. GBPNI/NMHS-2018–19/SG/178) to work on the aspect of waste management in the Indian Himalayan regions. AK is supported by the Department of Biotechnology (DBT), Ministry of Science and Technology Government of India (DBT/JRF/BET-17/I/2017/AL/367) through PhD studentship award. The project is financially supported by the DST-TDT project no. DST/TDT/WM/2019/43DST.

Author information

Authors and Affiliations

Authors

Contributions

Sareeka Kumari: conceptualization, methodology, investigation, visualization, validation, writing—original draft. Anil Kumar: methodology, investigation, validation, writing—original draft. Rakshak Kumar: conceptualization, resources, supervision, writing—review and editing, finalizing the manuscript, project administration, funding acquisition.

Corresponding author

Correspondence to Rakshak Kumar.

Ethics declarations

Conflict of interest

The authors declare no competing interests.

Additional information

Publisher's note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary file1 (PDF 211 KB)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Kumari, S., Kumar, A. & Kumar, R. A cold-active cellulase produced from Exiguobacterium sibiricum K1 for the valorization of agro-residual resources. Biomass Conv. Bioref. 13, 14777–14787 (2023). https://doi.org/10.1007/s13399-022-03031-w

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13399-022-03031-w

Keywords

Navigation