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DNA barcode reveals high cryptic diversity in the commercially important Penaeini shrimps (Decapoda, Penaeidae)

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Abstract

The inability to precisely identify biological species has direct impacts on conservation efforts, which is especially true among taxa of great commercial interest such as representatives of the Penaeini tribe. Those shrimp supply more than half of the global demand for crustaceans and have important functional roles in ocean ecosystems. Recent systematic studies suggest that the diversity of taxa within Penaeini is underestimated, and there are controversial taxonomic classifications. In this work, we used phylogenetic and phylogeographic approaches to assess the genetic diversity and evolutionary of representatives of the Penaeini tribe, focusing on the mitochondrial cytochrome oxidase subunit I gene. A total of 1680 COI sequences from 24 species were accessed on the Bold Systems platform. We detected several identification errors and synonyms among the 15 taxa of the tribe, principally within the genus Penaeus. Phylogeographic analyses allowed the identification of highly structured populations within several ecoregions of the Atlantic (19), Indian (16), and Pacific (10) oceans. The delimitation methods (GMYC, bPTB, and BINs) suggest are cryptic species such as Fenneropenaeus indicus (2 MOTUs), Litopenaeus vannamei (2 MOTUs), Penaeus monodon (3 MOTUs), and P. semisulcatus (4 MOTUs). The highest cryptic diversity concentration was found in the Indo-West Pacific region, suggesting it as the center of origin for the tribe. Our data provide important information that could subsidize management actions and guarantee the long-term maintenance of those lineages and their stocks.

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Data availability

All sequences obtained from this study were extracted of Bold Systems repository, (https://v4.boldsystems.org/).

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Acknowledgements

We thank Dr. Kim Ribeiro Barão, Dr. Alexandre Oliveira, Dr. Henrique Batalha, and Dra. Silvia Britto for their critical review of the original manuscript.

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  1. Laboratório de Sistemática Integrativa Molecular, Campus-Penedo, Universidade Federal de Alagoas, Avenida Beira Rio S/N, Penedo, Alagoas, CEP, 57200-000, Brazil

    Maria Carolina Lima Farias, Alany Itala Pontes & Uedson Pereira Jacobina

  2. Laboratório de Carcinologia, Campus-Penedo, Universidade Federal de Alagoas, Avenida Beira Rio S/N, Penedo, Alagoas, CEP, 57200-000, Brazil

    Petrônio Coelho Filho

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  1. Maria Carolina Lima Farias
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  2. Petrônio Coelho Filho
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  3. Alany Itala Pontes
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  4. Uedson Pereira Jacobina
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Contributions

All authors contributed to the production of this article: MCLF: conceptualization, methodology, software, formal analysis, investigation, writing—original draft, writing—review and editing, visualization. PCF: conceptualization, investigation, writing—original draft. AIP: writing—review and editing, visualization. UPJ: conceptualization, methodology, software, formal analysis, investigation, writing—original draft, writing—review and editing, visualization, supervision, project administration.

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Correspondence to Uedson Pereira Jacobina.

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Farias, M.C.L., Filho, P.C., Pontes, A.I. et al. DNA barcode reveals high cryptic diversity in the commercially important Penaeini shrimps (Decapoda, Penaeidae). Org Divers Evol 23, 857–869 (2023). https://doi.org/10.1007/s13127-023-00616-9

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