Abstract
Auxin is a useful compound which has an effect on plant root and shoot elongation. Thus, the aim of this study was to determine a suitable medium formula to produce indole-3-acetic acid (IAA). Adding various nitrogen sources such as beef extract, chicken manure solution, soybean residue, yeast extract, soybean powder and casein, supplemented with and without inducible substances such as tryptophan, optimized incubation temperature. IAA content in crude extraction was detected by TLC chromatography. Moreover, both the optimum concentration of IAA crude and the most suitable method (spreading or dipping) for application on Jerusalem artichoke were investigated. Five isolates revealed positive results on IAA product. The alternative medium for IAA production in the formula that consisted of soybean residue showed significantly highest contents of substances like IAA product when the rhizobacteria was cultured at 25 and 30 °C. Sixty µg/ml of crude extracted IAA was the optimum concentration, promoting Jerusalem artichoke (Helianthus tuberosus L.), growth with 100% germination. In addition, the root and shoot lengths exhibited were 3.79 and 7.14 cm, respectively. Dipping seed method was the most effective approach for encouraging seedling development, with a percentage of germination of 86.67 and root and shoot lengths of 4.48 and 5.39 cm, respectively. Our results demonstrated that a simple approach and appropriate concentration of crude extracted IAA could boost Jerusalem artichoke seedling development.
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References
Yousef, M.H.N.: Capability of plant growth-promoting rhizobacteria (PGPR) for producing indole acetic acid (IAA) under extreme conditions. Eur. J. Biol. Res. (2018). https://doi.org/10.5281/zenodo.1412796
Atia, I., Shahida, H.: Auxin producing Pseudomonas Strains: biological candidates to modulate the growth of Triticum aestivum beneficially. Am. J. Plant. Sci. (2013). https://doi.org/10.4236/ajps.2013.49206
Kamilova, F., Validov, S., Azarova, T., Mulders, I., Lugtenberg, B.: Enrichment for enhanced competitive plant root tip colonizers selects for a new class of biocontrol bacteria. Environ. Microbiol. (2015). https://doi.org/10.1111/j.1462-2920.2005.00889.x
Haas, D., Défago, G.: Biological control of soil-borne pathogens by fluorescent Pseudomonads. Nat. Rev. Microbiol. (2005). https://doi.org/10.1038/nrmicro1129
Wagi, S., Ahmed, A.: Bacillus spp.: potent microfactories of bacterial IAA. PeerJ. (2019). https://doi.org/10.7717/peerj.7258
Fu, S.F., Wei, J.Y., Chen, H.W., Liu, Y.Y., Lu, H.Y., Chou, J.Y.: Indole-3-acetic acid: A widespread physiological code in interactions of fungi with other organisms. Plant. Signal. Behav. (2015). https://doi.org/10.1080/15592324.2015.1048052
Egamberdieva, D.: Indole-acetic acid production by root associated bacteria and its role in plant growth and development. In: Keller, A.H., Fallon, M.D. (eds.) Soil Nutrients, pp. 1–14. Nova Science Publishers, Hauppauge (2012)
Spaepen, S., Vanderleyden, J.: Auxin and plant-microbe interactions. Cold Spring Harb. Protoc. (2011). https://doi.org/10.1101/cshperspect.a001438
Gutierrez, C.K., Matsui, G.Y., Lincoln, D.E., Lovell, C.R.: Production of the phytohormone indole-3-Acetic acid by Estuarine species of the Genus Vibrio. Appl. Environ. Microbiol. (2009). https://doi.org/10.1128/AEM.02072-08
Swain, M.R., Naskar, S.K., Ray, R.C.: Indole-3-acetic acid production and effect on sprouting of Yam (Dioscorea rotundata L.). Pol. J. Microbiol. 2, 103–110 (2007)
Chanram, R., Trakulnaleamsai, S., Maneeboon, T., Soiklom, S.: Optimization of indole-3-acetic acid (IAA) production by Bacillus spp. isolated from alkaline soil. NRCT (2017). https://doi.org/10.14457/KU.res.2017.146
Morr, C.V.: Nitrogen conversion factors for several soybean protein products. J. Food Sci. (2006). https://doi.org/10.1111/j.1365-2621.1981.tb04175.x
Almaz, M., Halim, R.A., Yusoff, M.M., Wahid, S.A.: Decomposition and nitrogen mineralization of individual and mixed maize and soybean residue. MAYFEB J. Agric. Sci. 2, 28–45 (2016)
Thimann, K.V.: Auxins and the inhibition of plant growth. Biol. Rev. 14, 314–337 (1939)
Pimsaen, W., Jogloy, S., Suriharn, B., Kesmala, T., Pensuk, V., Patanothai, A.: Genotype by environment (G × E) interaction for yield component of Jerusalem artichoke (Helianthus tuberosus L.). Asian J. Plant. Sci. (2010). https://doi.org/10.3923/ajps.2010.11.19
Boiero, L., Perrig, D., Masciarelli, O., Penna, C., Cassán, F., Luna, V.: Phytohormone production by three strains of Bradyrhizobium japonicum and possible physiological and technological implications. Appl. Microbiol. Biotechnol. (2007). https://doi.org/10.1007/s00253-006-0731-9
Shrivastava, U.P., Kumar, A.: A simple and rapid plate assay for the screening of indole-3-acetic acid (IAA) producing microorganisms. Int. J. Appl. Biol. 2, 120–123 (2011)
Senthil, N., Elangovan, K., Rajkumar, S., Bavya, M.: Studies on Indole acetic acid production and phosphate solubilization from forest soil bacteria. BTAIJ 4, 212–216 (2010)
Sritongon, K., Mongkolthanaruk, W., Boonlue, S., Jogloy, S., Puangbut, D., Riddech, N.: Rhizobacterial candidates isolated from Jerusalem Artichoke (Helianthus tuberosus L.) rhizosphere for host plant growth promotion. Chiang Mai J. Sci. 44, 83–93 (2017)
Wu, S.C., Cao, Z.H., Li, Z.G., Cheung, K.C., Wong, M.H.: Effects of biofertilizer containing N-fixer, P and K solubilizers and AM fungi on maize growth. Geoderma (2005). https://doi.org/10.1016/j.geoderma.2004.07.003
Teale, W.D., Paponov, I.A., Palme, K.: Auxin in action: signaling, transport and the control of plant growth and development. Nat. Rev. Mol. Cell. Biol. (2006). https://doi.org/10.1038/nrm2020
Dar, G.H.H., Sofi, S., Padder, S.A., Kabli, A.: Molecular characterization of rhizobacteria isolated from walnut (Juglans regia) rhizosphere in Western Himalayas and assessment of their plant growth promoting activities. Biodivers. J. (2018). https://doi.org/10.13057/biodiv/d190245
Namwongsa, J., Jogloy, S., Vorasoot, N., Boonlue, S., Riddech, N., Mongkolthanaruk, W.: Endophytic bacteria improve root traits, biomass and yield of Helianthus tuberosus L. under normal and deficit water conditions. J. Microbiol. Biotechnol. (2019). https://doi.org/10.4014/jmb.1903.03062
Ansari, F.A., Jabeen, M., Ahmad, A.: Pseudomonas azotoformans FAP5, a novel biofilm-forming PGPR strain, alleviates drought stress in wheat plant. Int. J. Environ. Sci. (2021). https://doi.org/10.1007/s13762-020-03045-9
Jin, S., Liu, L., Liu, Z., Long, H., Shao, H., Chen, J.: Characterization of marine Pseudomonas spp. antagonist towards three tuber-rotting fungi from Jerusalem artichoke, a new industrial crop. Ind. Crops Prod. 43, 556–561 (2013)
Sarin, S., Prombunchachai, T., Nakaew, N., Chidburee, A.: Isolation of indole acetic acid producing pink pigmented facultative methylotrophs (PPFMs) from Murdannia loriformis. Naresuan Univ. J. 21, 14–24 (2013)
Ahmad, E., Sharma, S.K., Sharma, P.K.: Deciphering operation of tryptophan independent pathway in high indole – 3-acetic acid (IAA) producing Micrococcus aloeverae DCB-20. FEMS Microbiol. Lett. (2020). https://doi.org/10.1093/femsle/fnaa190
Mohite, B.: Isolation and characterization of indole acetic acid (IAA) producing bacteria from rhizospheric soil and its effect on plant growth. Soil. Sci. Plant. Nutr. (2013). https://doi.org/10.4067/S0718-95162013005000051
Ma, X., Hu, X., Liu, L., Li, X., Ma, Z., Chen, J., Wei, X.: The quality changes and microflora analysis of commercial instant soya milk. Food Sci. Nutr. (2016). https://doi.org/10.1002/fsn3.371
Swallah, M.S., Fan, H., Wang, S., Yu, H., Piao, C.: Prebiotic impacts of soybean residue (Okara) on Eubiosis/Dysbiosis condition of the gut and the possible effects on liver and kidney functions. Molecules (2021). https://doi.org/10.3390/molecules26020326
Li, B., Qiao, M., Lu, F.: Composition, nutrition, and utilization of Okara (soybean residue). Food Rev. Int. (2011). https://doi.org/10.1080/87559129.2011.595023
Amburgh, M.V., Ross, D., Ortega, A.F., LaPierre, A.: Quantitation of amino acids in soy flour, fried cow’s milk powder, and corn silage by Triple quadrupole LC/MS/MS. Agilent Technologies, Santa Clara (2021). https://www.agilent.com/cs/library/applications/application-amino-acids-soy-flour-6470-triple-quadrupole-5994-3044en-agilent.pdf Accessed 20 Sept 2022
Ichikawa, N., Ng, S.L., Makino, S., Goh, L.L., Lim, J.Y., Ferdinandus., Sasaki, H., Shibata, S., Lee, K.C.: Solid-state fermented Okara with Aspergillus spp. improves lipid metabolism and high-fat diet induced obesity. Metabolites (2022). https://doi.org/10.3390/metabo12030198
Naveed, M., Qureshi, A.M., Ahmed, Z.Z., Hussain, B.M., Sessitsch, A., Mitter, B.: l-Tryptophan-dependent biosynthesis of indole-3-acetic acid (IAA) improves plant growth and colonization of maize by Burkholderia phytofirmans PsJN. Ann. Microbiol. (2015). https://doi.org/10.1007/s13213-014-0976-y
Liu, Y.K., Kuo, H.C., Lai, C.H., Chou, C.C.: Single amino acid utilization for bacterial categorization. Sci. Rep. (2020). https://doi.org/10.1038/s41598-020-69686-5
Adour, L., Couriol, C., Amrane, A.: Differentiation between amino acids used as carbon and energy sources during growth of Geotrichum candidum Geo17. Food Technol. Biotechnol. 43, 85–89 (2005)
Chandra, S., Askari, K., Kumari, M.: Optimization of indole acetic acid production by isolated bacteria from Stevia rebaudiana rhizosphere and its effects on plant growth. Genet. Eng. Biotechnol. (2018). https://doi.org/10.1016/j.jgeb.2018.09.001
Aldesuquy, H.S., Mansour, F., Abo-Hamed, S.A.: Effect of the culture filtrates of Streptomyces on growth and productivity of wheat plants. Folia Microbiol. (1998). https://doi.org/10.1007/BF02820792
Klayraung, S., Niamsup, P., Chuenbarn, T., Wongkattiya, N.: Study on bioactive compounds from chlorate reducing bacteria for agricultural uses. Maejo University. (2014). https://tarr.arda.or.th/preview/item/Yo1CWEQzcIbxnJ65J6HAx. Accessed 17 July 2021
Klayraung, S., Niamsup, P., Chuenbarn, T., Ngarmsom, A.: Indole-3-acetic acid production by Chlorate degrading bacteria. Maejo University, Chiang Mai (2015). https://erp.mju.ac.th/openFile.aspx?id=MTc2MDQx. Accessed 8 July 2021
Zolman, B.K., Yoder, A., Bartel, B.: Genetic analysis of indole-3-butyric acid responses in Arabidopsis thaliana reveals four mutant classes. Genetics (2000). https://doi.org/10.1093/genetics/156.3.1323
Eslamboly, E.L., Ahmed, A.: Effect of watermelon propagation by cuttings on vegetative growth, yield and fruit quality. Egypt. J. Agric. Res. (2014). https://doi.org/10.21608/EJAR.2014.155191
Scagel, C.F., Linderman, R.G.: Modification of root IAA concentration, tree growth, and survival by application of plant growth regulating substances to container-grown conifers. New. For. (2001). https://doi.org/10.1023/A:1011869411552
Montri, N., Khoikeaw, K., Saenphakdi, S., Junpatiw, A.: Effect of auxins on seeds germination and seedlings development of Stemona curtisii Hook. f. in vitro. Khon Kaen Agric. J. 42, 335–340 (2014)
Chanchula, N., Taychasinpitak, T., Piriyaphattarakit, A.: Influence of auxin on rooting and growing of ornamental sweet potato. NRCT (2017). https://doi.org/10.14456/tjst.2017.40
Ogwu, M.C.: Effects of indole-3-acetic acid on the growth parameters of Citrullus lanatus (Thunberg) Matsum and Nakai. Momona Ethiop. J. Sci. (2018). https://doi.org/10.4314/mejs.v10i1.8
Rhoades, J.: Jerusalem Artichoke Care: Learn how to grow a Jerusalem Artichoke. Gardening Know How (2021). https://www.gardeningknowhow.com/edible/vegetables/jerusalem-artichokes/growing-jerusalem-artichokes.htm. Accessed 8 Oct 2021
Acknowledgements
The author would like to gratefully acknowledge Department of Microbiology, Faculty of Science, Khon Kaen University. The authors acknowledge to Mr. Matthew Graham Savage for proofing this manuscript.
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This work was supported by Office of National Higher Education Science Research and Innovation Policy Council under Program Management Unit - B (Project B05F630053).
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Onrit, N., Boonlue, S., Mongkolthanaruk, W. et al. Alternative Nitrogen Source for Producing Crude Extracted IAA and Suitable Method for Enhancing the Germination of Jerusalem Artichoke. Waste Biomass Valor 14, 1497–1508 (2023). https://doi.org/10.1007/s12649-022-01970-z
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DOI: https://doi.org/10.1007/s12649-022-01970-z