Skip to main content

Advertisement

Log in

Aqueous ionic liquids influence the disulfide bond isoform equilibrium in conotoxin AuIB: a consequence of the Hofmeister effect?

  • Review
  • Published:
Biophysical Reviews Aims and scope Submit manuscript

Abstract

The appearance of several disulfide bond isoforms in multiple cysteine containing venom peptides poses a significant challenge in their synthesis and purification under laboratory conditions. Recent experiments suggest that careful tuning of solvent and temperature conditions can propel the disulfide bond isoform equilibrium in favor of the most potent, native form. Certain aqueous ionic liquids (ILs) have proven significantly useful as solvents for this purpose, while exceptions have also been noted. To elucidate the molecular level origin behind such a preference, we report a detailed explicit solvent replica exchange molecular dynamics study of a conotoxin, AuIB, in pure water and four different aqueous IL solutions (~45–60% v/v). The ILs studied here are comprised of cations like 1-ethyl-3-methyl-imidazolium (Im21+) or 1-butyl-3-methyl-imidazolium (Im41+) coupled with either acetate (OAc) or chloride (Cl) as the counter anion. Our simulations unfold interesting features of the conformational spaces sampled by the peptide and its solvation in pure water and aqueous IL solutions. Detailed investigation into populations of the globular disulfide bond isoform of AuIB in aqueous IL solutions reveal distinct trends which might be related to the Hofmeister effect of the cation and anion of the IL and of specific interactions of the aqueous IL solutions with the peptide. In accordance with experimental observations, the aqueous [Im21][OAc] solution is found to promote the highest globular isoform population in AuIB.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

References

  • Abraham MJ, Gready JE (2008) Ensuring mixing efficiency of replica-exchange molecular dynamics simulations. J Chem Theory Comput 4(7):1119–1128

  • Becker S, Terlau H (2008) Toxins from cone snails: properties, applications and biotechnological production. Appl Microbiol Biotechnol 79:1–9

  • Bellissent-Funel M-C, Hassanali A, Havenith M, Henchman R, Pohl P, Sterpone F, van der Spoel D, Xu Y, Garcia AE (2016) Water determines the structure and dynamics of proteins. Chem Rev 116(13):7673–7697

  • Benedetto A, Ballone P (2016a) Room temperature ionic liquids meet biomolecules: a microscopic view of structure and dynamics. ACS Sustain Chem Eng 4(2):392–412

  • Benedetto A, Ballone P (2016b) Room temperature ionic liquids interacting with bio-molecules: an overview of experimental and computational studies. Philos Mag 96(7–9):870–894

  • Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28:235–242

  • Bonomi M, Branduardi D, Bussi G, Camilloni C, Provasi D, Raiteri P, Donadio D, Marinelli F, Pietrucci F, Broglia RA, Parrinello M (2009) PLUMED: A portable plugin for free-energy calculations with molecular dynamics. Comput Phys Commun 180(10):1961–1972

  • Buchete NV, Hummer G (2008) Coarse master equations for peptide folding dynamics. J Phys Chem B 112(19):6057–6069

  • Canchi DR, Garcia AE (2013) Cosolvent effects on protein stability. Annu Rev Phys Chem 64:273–293

  • Chaban VV, Voroshylovab IV, Kaluginb ON (2011) A new force field model for the simulation of transport properties of imidazolium-based ionic liquids. Phys Chem Chem Phys 13:7910–7920

  • Cho J-H, Mok KH, Olivera BM, McIntosh JM, Park K-H, Han K-H (2000) Nuclear magnetic resonance solution conformation of alpha-conotoxin AuIB, an alpha(3)beta(4) subtype-selective neuronal nicotinic acetylcholine receptor antagonist. J Biol Chem 275(12):8680–8685

  • Cornell WD, Cieplak P, Bayly CI, Gould IR, JKM M, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA (1995) A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc 117:5179–5197

  • Diddens D, Lesch V, Heuerab A, Smiatek J (2017) Aqueous ionic liquids and their influence on peptide conformations: denaturation and dehydration mechanisms. Phys Chem Chem Phys 19:20430–20440

  • Dillon TM, Ricci MS, Vezina C, Flynn GC, Liu YD, Rehder DS, Plant M, Henkle B, Li Y, Deechongkit S, Varnum B, Wypych J, Balland A, Bondarenko PV (2008) Structural and functional characterization of disulfide isoforms of the human IgG2 subclass. J Biol Chem 283:16206–16215

  • Dutton JL, Bansal PS, Hogg RC, Adams DJ, Alewood PF, Craik DJ (2002) A new level of conotoxin diversity, a non-native disulfide bond connectivity in alpha-Conotoxin AuIB reduces structural definition but increases biological activity. J Biol Chem 277:48849–48857

  • Góngora-Benítez M, Tulla-Puche J, Albericio F (2013) Constella™(EU)-Linzess™(USA): the last milestone in the long journey of the peptide linaclotide and its implications for the future of peptide drugs. Future Med Chem 5(3):291–300

  • Grishin AA, Wang CI, Muttenthaler M, Alewood PF, Lewis RJ, Adams DJ (2010) Alpha-conotoxin AuIB isomers exhibit distinct inhibitory mechanisms and differential sensitivity to stoichiometry of alpha3beta4 nicotinic acetylcholine receptors. J Biol Chem 285(29):22254–22263

  • Grishin AA, Cuny H, Hung A, Clark RJ, Brust A, Akondi K, Alewood PF, Craik DJ, Adams DJ (2013) Identifying key amino acid residues that affect alpha-conotoxin AuIB inhibition of alpha3-beta4 nicotinic acetylcholine receptors. J Biol Chem 288(48):34428–34442

  • Guo M, Zhai Y, Guo C, Liu Y, Tang D, Pan Y (2015) A new strategy to determine the protein mutation site using matrix-assisted laser desorption ionization in-source decay: Derivatization by ionic liquid. Anal Chim Acta 865:31–38

  • Gupta K, Kumar M, Balaram P (2010) Disulfide bond assignments by mass spectrometry of native natural peptides: cysteine pairing in disulfide bonded conotoxins. Anal Chem 82:8313–8319

  • Gurau MC, Lim S-M, Castellana ET, Albertorio F, Kataoka S, Cremer PS (2004) On the mechanism of the Hofmeister effect. J Am Chem Soc 126:10522–10523

  • Haberler M, Schroder C, Steinhauser O (2011) Solvation studies of a zinc finger protein in hydrated ionic liquids. Phys Chem Chem Phys 13(15):6955–6969

  • Haberler M, Schröder C, Steinhauser O (2012) Hydrated ionic liquids with and without solute: the influence of water content and protein solutes. J Chem Theory Comput 8(10):3911–3928

  • Heimer P, Tietze AA, Bohm M, Giernoth R, Kuchenbuch A, Stark A, Leipold E, Heinemann SH, Kandt C, Imhof D (2014) Application of room-temperature aprotic and protic ionic liquids for oxidative folding of cysteine-rich peptides. Chembiochem 15(18):2754–2765

  • Hofmeister F (1988) Zur lehre von der wirkung der salze. Arch Exp Pathol Pharmakol 24:247–260

  • Humphrey W, Dalke A, Schulten K (1996) VMD - visual molecular dynamics. J Molec Graph 14:33–38

  • Jenkins HDB, Marcus Y (1995) Viscosity BCoefficients of ions in solution. Chem Rev 95:2695–2724

  • Jorgensen WL, Jenson C (1998) Temperature dependence of TIP3P, SPC, and TIP4P water from NPT monte carlo simulations: seeking temperatures of maximum density. J Comput Chem 19(10):1179–1186

  • Jorgensen WL, Chandrasekhar J, Madura JD (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926–935

  • Kaas Q, Westermann JC, Halai R, Wang CK, Craik DJ (2008) ConoServer, a database for conopeptide sequences and structures. Bioinformatics 24(3):445–446

  • Kaas Q, Westermann J-C, Craik DJ (2010) Conopeptide characterization and classifications: an analysis using ConoServer. Toxicon 55(8):1491–1509

  • Kaas Q, Yu R, Jin AH, Dutertre S, Craik DJ (2012) ConoServer: updated content, knowledge, and discovery tools in the conopeptide database. Nucleic Acids Res 40(Database Issue):D325–D330

  • Kale L, Skeel R, Bhandarkar M, Brunner R, Gursoy A, Krawetz N, Phillips J, Shinozaki A, Varadarajan K, Schulten K (1999) NAMD2: Greater scalability for parallel molecular dynamics. J Comput Phys 151:283–312

  • Khoo KK, Feng Z-P, Smith BJ, Zhang M-M, Yoshikami D, Olivera BM, Bulaj G, Norton RS (2009) Structure of the analgesic μ-Conotoxin KIIIA and effects on the structure and function of disulfide deletion. Biochemistry 48:1210

  • Khoo KK, Gupta K, Green BR, Zhang M-M, Watkins M, Olivera BM, Balaram P, Yoshikami D, Bulaj G, Norton RS (2012) Distinct disulfide isomers of μ-Conotoxins KIIIA and KIIIB block voltage-gated sodium channels. Biochemistry 51(49):9826–9835

  • Klähn M, Lim GS, Seduraman A, Wu P (2011) On the different roles of anions and cations in the solvation of enzymes in ionic liquids. Phys Chem Chem Phys 13(4):1649–1662

  • Lebbe EKM, Peigneur S, Wijesekara I, Tytgat J (2014) Conotoxins targeting nicotinic acetylcholine receptors: an overview. Marine Drugs 12:2970–3004

  • Lesch V, Heuer A, Tatsis VA, Holm C, Smiatek J (2015) Peptides in the presence of aqueous ionic liquids: tunable co-solutes as denaturants or protectants? Phys Chem Chem Phys 17:26049–26053

  • Luo S, Kulak JM, Cartier GE, Jacobsen RB, Yoshikami D, Olivera BM, McIntosh JM (1998) Alpha-conotoxin AuIB selectively blocks alpha3 beta4 nicotinic acetylcholine receptors and nicotine-evoked norepinephrine release. J Neurosci 18:8571–8579

  • Miloslavina AA, Leipold E, Kijas M, Stark A, Heinemann SH, Imhof D (2009) A room temperature ionic liquid as convenient solvent for the oxidative folding of conopeptides. J Peptide Sci 15(2):72–77

  • Miloslavina A, Ebertb C, Tietze D, Ohlenschläger O, Englert C, Görlach M, Imhof D (2010) An unusual peptide from Conus villepinii: synthesis, solution structure, and cardioactivity. Peptides 31:1292–1300

  • Miyamoto S, Kollman PA (1992) SETTLE: an analytical version of the SHAKE and RATTLE algorithm for rigid water models. J Comput Chem 13(8):952–962

  • Monti S, Corozzi A, Fristrup P, Joshi KL, Shin YK, Oelschlaeger PC, van Duin AC, Barone V (2013) Exploring the conformational and reactive dynamics of biomolecules in solution using an extended version of the glycine reactive force field. Phys Chem Chem Phys 15(36):15062–15077

  • Müller J, Hartke B (2016) ReaxFF reactive force field for disulfide mechanochemistry, fitted to multireference ab initio data. J Chem Theory Comput 12(8):3913–3925

  • Muttenthaler M, Nevin ST, Grishin AA, Ngo ST, Choy PT, Daly NL, Hu S-H, Armishaw CJ, Wang C-IA, Lewis RJ, Martin JL, Noakes PG, Craik DJ, Adams DJ, Alewood PF (2010) Solving the a-Conotoxin folding problem: efficient selenium-directed on-resin generation of more potent and stable nicotinic acetylcholine receptor antagonists. J Am Chem Soc 132:3514–3522

  • Naushad M, Alothman ZA, Khan AB, Ali M (2012) Effect of ionic liquid on activity, stability, and structure of enzymes: a review. Int J Biol Macromol 51(4):555–560

  • Omta AW, Kropman MF, Woutersen S, Bakker HJ (2003) Negligible effect of ions on the hydrogen-bond structure in liquid water. Science 301:347–349

  • Periole X, Mark AE (2007) Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent. J Chem Phys 126:014903

  • Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kale L, Schulten K (2005) Scalable molecular dynamics with NAMD. J Comput Chem 26:1781–1802

  • Ren P, Chun J, Thomas DG, Schnieders MJ, Marucho M, Zhang J, Baker NA (2012) Biomolecular electrostatics and solvation: a computational perspective. Q Rev Biophys 45(4):427–491

  • Roy D, Lakshminarayanan M (2016) Scrambling of disulfide bond scaffolds in neurotoxin AuIB: a molecular dynamics simulation study. Biopolymers (Pept Sc) 106(2):196–209

  • Sajeevan KA (2017) Roy, D. Temperature dependent molecular dynamics study reveals an ionic liquid induced 310- to α-helical switch in a neurotoxin. Pept Sci 108(3):e23009

  • Schroder C (2017) Proteins in ionic liquids: current status of experiments and simulations. Top Curr Chem 375:25

  • Sheldon R (2001) Catalytic reactions in ionic liquids. Chem Commun 0(23):2399–2407

  • Sivapragasam M, Moniruzzaman M, Goto M (2016) Recent advances in exploiting ionic liquids for biomolecules: solubility, stability and applications. Biotechnol J 11(8):1000–1013

  • Tadeo X, Lopez-Mendez B, Castano D, Trigueros T, Millet O (2009) Protein stabilization and the hofmeister effect: the role of hydrophobic solvation. Biophys J 97:2595–2603

  • Tietze AA, Heimer P, Stark A, Imhof D (2012) Ionic liquid applications in peptide chemistry: synthesis, purification and analytical characterization processes. Molecules 17(4):4158–4185

  • Tribello GA, Bonomi M, Branduardi D, Camilloni C, Bussi G (2014) Plumed 2: new feathers for an old bird. Comput Phys Commun 185(2):604–613

  • van Rantwijk F, Sheldon RA (2007) Biocatalysis in ionic liquids. Chem Rev 107(6):2757–2785

  • Vanommeslaeghe K, Hatcher E, Acharya C, Kundu S, Zhong S, Shim J, Darian E, Guvench O, Lopes P, Vorobyov I, Mackerell AD Jr (2009) CHARMM general force field: a force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields. J Comput Chem 31(4):671–690

  • Von Hippel PH, Wong KY (1964) Neutral salts: the generality of their effects on the stability of macromolecular conformations. Science 145:577–580

  • Wan X, Kumar S, Singh SK (2011) Disulfide scrambling in IgG2 monoclonal antibodies: insights from molecular dynamics simulations. Pharm Res 28(12):3128–3144

  • Welton T (1999) Room-temperature ionic liquids. Solvents for synthesis and catalysis. Chem Rev 99:2071–2083

  • Yang Z (2012) Ionic liquids and proteins: academic and some practical interactions. In: de María PD (ed) Ionic liquids in biotransformations and organocatalysis: solvents and beyond. Wiley, New York, pp 15–71

  • Zangi R (2010) Can salting-in/salting-out ions be classified as chaotropes/kosmotropes? J Phys Chem B 114(1):643–650

  • Zhang Y, Furyk S, Bergbreiter DE, Cremer PS (2005) Specific ion effects on the water solubility of macromolecules: PNIPAM and the hofmeister series. J Am Chem Soc 127:14505–14510

  • Zhang Z, Nie Y, Zhang Q, Liu X, Tu W, Zhang X, Zhang S-J (2017) Quantitative change of disulfide bond and microstructure variation of the regenerated wool keratin from various ionic liquids. ACS Sustain Chem Eng 5(3):2614–2622

  • Zhao H (2006) Are ionic liquids kosmotropic or chaotropic? An evaluation of available thermodynamic parameters for quantifying the ion kosmotropicity of ionic liquids. J Chem Technol Biotechnol 81:877–891

  • Zhao H (2016) Protein stabilization and enzyme activation in ionic liquids: specific ion effects. J Chem Technol Biotechnol 91:25–50

  • Zhao H, Olubajo O, Song Z, Sims AL, Person TE, Lawal RA, Holley LA (2006) Effect of kosmotropicity of ionic liquids on the enzyme stability in aqueous solutions. Bioorg Chem 34:15–25

Download references

Acknowledgements

DR sincerely acknowledges the encouragement and support received from Professor Mark Maroncelli of the Pennsylvania State University. The authors are thankful to Dr. Debashis Barik, University of Hyderabad, for his kind help in providing computation time. KAS and DR are grateful to the Department of Science & Technology, India (SERB, YSS/2014/000301), for funding. Authors also gratefully acknowledge support from Department of Science and Technology, India, for the FIST grant SR/FST/CSI-240/2012.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Durba Roy.

Ethics declarations

Conflict of interest

Karuna Anna Sajeevan declares that she has no conflict of interest. Durba Roy declares that she has no conflict of interest.

Ethical approval

This article does not contain any studies with human participants or animals performed by any of the authors.

Additional information

This article is part of a Special Issue on ‘Ionic Liquids and Biomolecules’ edited by Antonio Benedetto and Hans-Joachim Galla.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Sajeevan, K.A., Roy, D. Aqueous ionic liquids influence the disulfide bond isoform equilibrium in conotoxin AuIB: a consequence of the Hofmeister effect?. Biophys Rev 10, 769–780 (2018). https://doi.org/10.1007/s12551-017-0391-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12551-017-0391-2

Keywords

Navigation