Abstract
This paper proposes an accurate MRI brain tumor segmentation based on a Rotating Triangular Section with Fuzzy C-Means Optimization. Magnetic Resonance Imaging has become so popular due to its capability to differentiate tumors from the non-tumor region. The proposed method initially eliminates most of the background region by two level morphological reconstruction processes followed by thresholding. The two-level morphological reconstruction uses ‘erosion’ as the first level and ‘dilation’ as the second level. After eliminating the background, a region for Fuzzy C-Means (FCM) optimization is chosen using the Radius Contraction and Expansion process. The Radius Contraction and Expansion initially, selects the centroid and maximum radius of the region provided by the background elimination. The Radius Contraction and Expansion will give a contour whose shape is approximately the same as the shape of the tumor but larger than the size of the tumor region. The centroid of the new contour which acts as one of the vertices of the triangular region is again estimated. The remaining two vertex pixels are estimated from the contour pixels with a spacing provided by a spacing factor. FCM is then applied to this triangular region to obtain the accurate tumor pixels inside the triangular region. A new triangular region is estimated in the clockwise direction and FCM is again applied to the new triangular region. This process is repeated until the formation of the triangular region based FCM optimization completes one cycle. The performance of the proposed MRI brain tumor segmentation was evaluated using the \({T}_{1}\)- weighted contrast-enhanced image dataset with the metrics such as dice score, sensitivity, specificity, Hausdorff Distance, and Probabilistic Rand Index (PRI). Experimental results reveal that the proposed MRI brain tumor segmentation outperforms the other state-of-the-art MRI brain tumor segmentation method.
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References
Rabeh Amira Ben, Benzarti Faouzi and Amiri Hamid 2017 Segmentation of brain MRI using Active Contour Model. International Journal of Imaging System Technology 27(1): 3–11.
Otsu N 1979 A threshold selection method from gray-level histograms. IEEE Transaction on System Man and Cybernatics VOL. SMC-9 NO. 1: 62–66
Giraldi G A, Strauss E and Oliveira A A F 2000 A boundary extraction approach based on multi-resolution methods and the T-snakes framework. In: Proceedings 13th Brazilian Symposium Computer Graphics and Image Processing pp 17–20
Soltaninejad M and Yang G 2018 Supervised learning based multimodal MRI brain tumour segmentation using texture features from super voxels. Computer Methods and Programs in Biomedicine 69–84
Menon N and Ramakrishnan R 2015 Brain tumor segmentation in MRI images using unsupervised artificial bee colony algorithm and FCM clustering. In: International Conference Communications and Signal Processing (ICCSP) pp 6–9
Steenwijk M D, Pouwels P J, Daams M, van Dalen J W, Caan M W and Richard E 2013 Accurate white matter lesion segmentation by k nearest neighbor classification with tissue type priors (kNN-TTPs). NeuroImage Clinical 3: 462–469.
Kumar T S, Rashmi K, Ramadoss S, Sandhya L K and Sangeetha T J 2017 Brain tumor detection using SVM classifier In: 3rd International Conference Sensing Signal Processing and Security (ICSSS) pp 318–323
Tustison N J, Shrinidhi K L, Wintermark M, Durst C R, Kandel B M and Gee J C 2005 Optimal symmetric multimodal templates and concatenated random forests for supervised brain tumor segmentation (simplified) with ANTsR. Neuroinformatics 13(2): 209–225.
Sharma M, Purohit G N and Mukherjee S 2018 Information retrieves from brain MRI images for tumor detection using hybrid technique K-means and artificial neural network (KMANN) Networking. Communication and Data Knowledge Engineering 145–57.
Dong J and Qi M 2009 K-means optimization algorithm for solving clustering problem. Second International Workshop on Knowledge Discovery and Data Mining pp 52–55
Zohra B F, Nacra B and Abdelmalik T A 2015 Adjustment of active contour parameters in brain MRI segmentation using evolution strategies. In: 4th International Conference on Electrical Engineering ICEE pp 1–7
Chang H-H and Valentino D J 2008 An electrostatic deformable model for medical image segmentation. Computer Medical Imaging Graph 32(1): 22–35.
Srikrishnan V, Chaudhuri S, Roy S D and Sevcovic D 2007 On Stabilisation of Parametric Active contours. In; IEEE Conference Computer Vision and Pattern Recognition CVPR 07 pp 1–6
Xu C, Yezzi A and Prince J L 2000 On the relationship between parametric and geometric active contours. In: 34th Asilomar Conference Signals Systems and Computers 1: 483–489
Parveen Singh A 2015 Detection of brain tumor in MRI images, using combination of fuzzy C-means and SVM. 2nd International Conference Signal Processing and Integrated Networks SPIN pp 98–102
Havaei M, Davy A, Warde-Farley D, Biard A, Courville A, Bengio Y and Larochelle H 2017 Brain tumor segmentation with Deep Neural Networks. Medical Image Analysis 35: 18–31.
Tchoketch Kebir S, Mekaoui S and Bouhedda M 2018 A fully automatic methodology for MRI brain tumor detection and segmentation. The Imaging Science Journal 1–21
Hu K, Gan Q, Zhang Y, Deng S, Xiao F, Huang W and Gao X 2019 Brain Tumor Segmentation Using Multi-Cascaded Convolutional Neural Networks and Conditional Random Field. IEEE Access 7: 92615–92629.
Sun L, Zhang S, Chen H and Luo L 2019 Brain Tumor Segmentation and Survival Prediction Using Multimodal MRI Scans With Deep Learning. Frontiers in Neuroscience 13: 810.
Wang G, Li W, Ourselin S and Vercauteren T 2017 Automatic brain tumor segmentation using cascaded anisotropic convolutional neural networks In: International MICCAI brain lesion workshop 178-190
Ayachi R and Ben Amor N 2009 Brain Tumor Segmentation Using Support Vector Machines. Symbolic and Quantitative Approaches to Reasoning with Uncertainty ECSQARU LNAI 5590: 736–747.
Havaei M, Davy A, Warde-Farley D, Biard A, Courville A, Bengio Y, Pal C, Jodoin P M and Larochelle H 2017 Brain tumor segmentation with Deep Neural Networks. Medical Image Anal. 35: 18–31.
Ilunga-Mbuyamb E, Avina Cervantes J G, Garcia Perez A, Romero Troncoso R J, Aguirre-Ramos H, Cruz-Aceves I and Chalopin C 2017 Localized active contour model with background intensity compensation applied on automatic MR brain tumor segmentation. Neuro Computing 220: 84–97.
Gondra Cabria 2017 MRI segmentation fusion for brain tumor detection. Information Fusion 36: 1–9.
Umit Ilhan and Ahmet Ilhan 2017 Brain tumor segmentation based on a new threshold approach. In: 9th International Conference on Theory and Application of Soft Computing Procedia Computer Science 120: 580–587
Thaha M M, Kumar K P M and Murugan B S 2019 Brain Tumor Segmentation Using Convolutional Neural Networks in MRI Images. J. Med. Syst. 43: 294.
Naceur M B, Saouli R, Akil M and Kachouri R 2018 Fully Automatic Brain Tumor Segmentation using End-to-End Incremental Deep Neural Networks in MRI images, Computer Methods and Programs in Biomedicine Corpus id: 53288473
Zhang W, Li R, Deng H, Wang L, Lin W, Ji S and Shen D 2015 Deep convolutional neural networks for multi-modality is intense infant brain image segmentation. Neuro Image 108: 214–224.
Zhao X, Wu Y, Song G, Li Z, Zhan Y and Fan Y 2018 A deep learning model integrating FCNNs and CRFs for brain tumor segmentation. Medical Image Analysis 43: 98–4411.
Vijay V, Kavitha A R and Rebecca S R 2016 Automated Brain Tumor Segmentation and Detection in MRI Using Enhanced Darwinian Particle Swarm Optimization (EDPSO). Procedia Computer Science 92: 475–92480.
Ain Q, Jaffar M A and Choi T 2014 Fuzzy anisotropic diffusion based segmentation and texture based ensemble classification of brain tumor. Applied Soft Computing 21: 330–21340.
Li J, Yu Z L, Gu Z and Li Y 2019 MMAN Multi-Modality Aggregation Network for Brain Segmentation from MR Images. Neurocomputing 358: 10–19.
Tarkhaneh O and Shen H 2019 An Adaptive Differential Evolution Algorithm to Optimal Multi-level Thresholding for MRI Brain Image Segmentation. Expert Systems with Applications 118: 112820.
Shubhangi Nema, Dudhane Akshay, Murala Subrahmanyam and Naidu Srivatsava 2020 RescueNet: An unpaired GAN for brain tumor segmentation. Biomedical Signal Processing and Control 55: 101640–101648.
Huang M, Yang W, Wu Y, Jiang J, Chen W and Feng Q 2014 Brain tumor segmentation based on local independent projection-based classification. IEEE Trans. Biomed. Eng. 61(10): 2633–45.
Havaei M, Jodoin P M and Larochelle H 2014 Efficient interactive brain tumor segmentation as within-brain kNN classification. In: 22nd International Conference on Pattern Recognition pp 556–61
Kaur A 2016 An automatic brain tumor extraction system using different segmentation methods. In: Second International Conference on Computational Intelligence Communication Technology (CICT) pp 187–191
De Brebisson A and Montana G 2015 Deep neural networks for anatomical brain segmentation. In: IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) 20–28
Randhawa R S, Modi A, Jain P and Warier P 2016 Improving boundary classification for brain tumor segmentation and longitudinal disease progression. In: Second International Workshop BrainLes with the Challenges on BRATS ISLES and mTOP Held in Conjunction with MICCAI pp 65–74
Li Y, Jia F and Qin J 2016 Brain tumor segmentation from multimodal magnetic resonance images via sparse representation. Artif. Intell. Med. 73(Supplement C): 1–13.
Jiang J, Wu Y, Huang M, Yang W, Chen W and Feng Q 2013 3D brain tumor segmentation in multimodal MR images based on learning population- and patient specific feature sets. Comput. Med. Imaging Graph 37(7): 512–521.
Islam A, Reza S M S and Iftekharuddin K M 2013 Multifractal texture estimation for detection and segmentation of brain tumors. IEEE Trans. Biomed. Eng. 60(11): 3204–3215.
Kamnitsas K, Ledig C, Newcombe V F, Simpson J P, Kane A D and Menon D K 2017 Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation. Med. Image Anal. 36(Supplement C): 61–78.
Jaspin Jeba Sheela and G Suganthi G 2019 Automatic Brain Tumor Segmentation from MRI using Greedy Snake Model and Fuzzy C-means Optimization. Journal of King Saud University Computer and Information Sciences. https://www.sciencedirect.com/science/article/pii/S1319157818313120.
Sheela C J J and Suganthi G 2020 Brain tumor segmentation with radius contraction and expansion based initial contour detection for active contour model. Multimedia Tools and Applications 79: 23793–23819.
Cheng J, Brain Tumor Dataset 2017 [online]. Available: https://doi.org/10.6084/m9.figshare.1512427.v5.
Islam Mobarakol 2018 Multi-modal Pixel Net for Brain Tumor Segmentation, Brainlesion: Glioma Multiple Sclerosis Stroke and Traumatic Brain Injuries pp 298–308. https://doi.org/10.1007/978-3-319-75238-9_26.
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Sheela, C.J.J., Suganthi, G. Accurate MRI brain tumor segmentation based on rotating triangular section with fuzzy C- means optimization. Sādhanā 46, 226 (2021). https://doi.org/10.1007/s12046-021-01744-8
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DOI: https://doi.org/10.1007/s12046-021-01744-8