Abstract
There is substantial evidence supporting the anti-inflammatory and regenerative potential of dental pulp stem cells (DPSCs) through direct cell transplantation or paracrine action. However, DPSC secretome profile remains inadequately studied. This study provides proteomic profiling of the human DPSC secretome by comparatively analysising cell lysates and respective culture supernatants (i.e. conditioned media-CM) under variable oxygen tension conditions (normoxia-20% O2/CM_Norm vs. hypoxia 2% O2/CM_Hyp) and/or stimulation with Tumor Necrosis Factor alpha (TNF-α). DPSC-CM samples and respective crude lysates (DPSC-CL) were collected and subjected to SDS-PAGE, followed by LC-MS/MS analysis. The identified proteins were analyzed by Gene Ontology, Reactome, and String databases. The anti-inflammatory properties of DPSC-CMs were validated via an in vitro RAW_246.7 murine macrophages model through evaluation of the expression of pro-and anti-inflammatory markers by real-time PCR. Results showed a total of 2413 proteins identified in CM_Norm, 2479 in CM_Norm+TNF-α, 1642 in CM_Hyp, and 2002 in CM_Hyp + TNF-α samples. CM_Norm contained 122 proteins statistically significantly upregulated compared to the CM_Hyp and involved in pathways related to “ECM organization”, “cellular response to hypoxia”, and “IL signaling”. Functional network analysis showed that TGFβ1, TIMP1 and TIMP2 were key nodes among proteins significantly upregulated in the CM_Norm compared to the CM_Hyp, interacting with more than 10 proteins, each. DPSC-CM application in the in vitro RAW_246.7 model decreased the expression of pro-inflammatory markers (MMP-3, MMP-9, MMP-13, MCP-1), while increasing anti-inflammatory markers (IL-10). Overall, DPSC-CM collected under normoxic conditions is enriched with anti-inflammatory, tissue repair and regenerative factors, which prompts further investigation on its therapeutic applications.
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Data Availability
Data can be made available from the corresponding author upon reasonable request.
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Acknowledgments
We would like to thank Karsten Heidrich and Ulrike Schrameck, from the Research Core Unit Proteomics & Institute of Toxicology, Hannover Medical School, for good technical assistance.
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This research is co-financed by Greece and the European Union (European Social Fund- ESF) through the Operational Programme «Human Resources Development, Education and Lifelong Learning» in the context of the project “Strengthening Human Resources Research Potential via Doctorate Research” (MIS-5000432), implemented by the State Scholarships Foundation (ΙΚΥ).
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MB: Methodology, Validation, Formal analysis, Investigation, Writing - Original Draft, Visualization. AB: Conceptualization, Resources, Writing – Review & Editing, Supervision, Project administration, Funding acquisition. AP: Methodology, Software, Formal analysis, Writing – Review & Editing. EP: Methodology, Resources. AK: Resources, Writing – Review & Editing. PK: Conceptualization, Writing – Review & Editing, Supervision, Project administration, Funding acquisition.
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Supplementary Information
Supplementary Fig. 1
Characterization of dental pulp stem cells (DPSCs). Characterization of DPSCs by flow cytometry for the expression of mesenchymal (CD90/Thy-1, CD73, CD49f/a6-integrin, CD146/MUC18, STRO-1, CD34), endothelial (CD105/endoglin,) hematopoietic (CD45) and embryonic (SSEA-4) stem (SC) markers (green line: unstained control, red line: marker of interest). Results are means of triplicates (± SD) of two independent experiments. (PNG 5454 kb)
Supplementary Fig. 2
Sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE) of conditioned medium (CM) (a & b) and cell lysate (CL) (c) samples. a & b. Proteins of CM samples were separated by SDS-PAGE on a 10% acrylamide gel and then stained with Coomassie Brilliant blue. Lane 1 depicts the protein markers, while lanes 2 to 5 depict the CM samples as follows: CM_Norm, CM_Norm+TNF-α, CM_Hyp, CM_Hyp + TNF-α. c. Proteins of CL samples were separated by SDS-PAGE electrophoresis on a 15% acrylamide gel and then stained with Coomassie Brilliant blue. Lane 1 depicts the protein markers, while lanes 2 to 5 depict the CL samples as follows: CL_Norm, CL_Norm+TNF-α, CL_Hyp, CL_Hyp + TNF-α. (PNG 4718 kb)
Supplementary Fig. 3
Gene Ontology (GO) analysis of the CM samples regarding the term “Cellular Compartment”. (PNG 14148 kb)
Supplementary Fig. 4
Gene Ontology (GO) analysis of the CM-CL samples comparisons regarding the term “Cellular Compartment” (a-d), “Biological Process” (e-h), and “Pathway” (i-l). (PNG 12659 kb)
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Supplementary Fig. 5
Reactome Pathway analysis of CM-CL samples comparisons for a wide range of pathways (a-d) and specific pathways regarding the immune system (e-h). (PNG 12629 kb)
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Supplementary Fig. 6A
Viability/proliferation of RAW cells after the application of LPS and CM. The immune cell response induced by CM was tested initially assessed with an MTT assay, which showed a significant increase in cell viability/proliferation 24 h after LPS application. Addition of CM in LPS-stimulated RAW cells resulted in a decrease viability/proliferation. This effect was reversed after 48 h, where addition of CM samples had a stimulatory effect, resulting in significant increase in cell viability compared to control and LPS-stimulated RAW cells. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001. 6B Morphological assessment of RAW cells after the application of LPS and CM samples. Normal RAW cells (a), RAW cells+LPS (b), RAW cells+LPS + DMEM 24 h (c) and 48 h (d), RAW cells+LPS + CM_Norm 24 h (e), RAW cells+LPS + CM_Norm+TNF-α 24 h (f), RAW cells+LPS + CM_Hyp 24 h (g), RAW cells+LPS + CM_Hyp + TNF-α 24 h (h), RAW cells+LPS + CM_Norm 48 h (i), RAW cells+LPS + CM_Norm+TNF-α 48 h (j), RAW cells+LPS + CM_Hyp 48 h (k), and RAW cells+LPS + CM_Hyp + TNF-α 48 h (l). Normal RAW cells display an irregular form with pseudopodia (a). LPS application affected the morphology of RAW cells (b), which were transformed into a totally circular form after 24 and 48 h of the LPS application (c and d). This effect was partly reversed by the application of CM samples after 24 h (e-h), while the effect of CM_Norm was evident even 48 h after culture (i). (PNG 6137 kb)
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Supplementary Table 1
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Bousnaki, ., Bakopoulou, A., Pich, A. et al. Mapping the Secretome of Dental Pulp Stem Cells Under Variable Microenvironmental Conditions. Stem Cell Rev and Rep 18, 1372–1407 (2022). https://doi.org/10.1007/s12015-021-10255-2
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DOI: https://doi.org/10.1007/s12015-021-10255-2