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Recent advancements in bioreactions of cellular and cell-free systems: A study of bacterial cellulose as a model

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Abstract

Conventional approaches of regulating natural biochemical and biological processes are greatly hampered by the complexity of natural systems. Therefore, current biotechnological research is focused on improving biological systems and processes using advanced technologies such as genetic and metabolic engineering. These technologies, which employ principles of synthetic and systems biology, are greatly motivated by the diversity of living organisms to improve biological processes and allow the manipulation and reprogramming of target bioreactions and cellular systems. This review describes recent developments in cell biology, as well as genetic and metabolic engineering, and their role in enhancing biological processes. In particular, we illustrate recent advancements in genetic and metabolic engineering with respect to the production of bacterial cellulose (BC) using the model systems Gluconacetobacter xylinum and Gluconacetobacter hansenii. Besides, the cell-free enzyme system, representing the latest engineering strategies, has been comprehensively described. The content covered in the current review will lead readers to get an insight into developing novel metabolic pathways and engineering novel strains for enhanced production of BC and other bioproducts formation.

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References

  1. C. E. Hodgman and M. C. Jewett, Metab. Eng., 14, 261 (2012).

    Article  CAS  Google Scholar 

  2. R. Kwok, Nature, 463, 229 (2010).

    Article  Google Scholar 

  3. C. D. Smolke and P. A. Silver, Cell, 144, 855 (2011).

    Article  CAS  Google Scholar 

  4. A. S. Khalil and J. J. Collins, Nat. Rev. Genet., 11, 367 (2010).

    Article  CAS  Google Scholar 

  5. P. E. M. Purnick and R. Weiss, Nat. Rev. Mol. Cell Biol., 10, 410 (2009).

    Article  CAS  Google Scholar 

  6. J. R. Karr, J. C. Sanghvi, D. N. Macklin, M. V. Gutschow, J. M. Jacobs, B. Bolival, N. Assad-Garcia, J. I. Glass and M. W. Covert, Cell, 150, 389 (2012).

    Article  CAS  Google Scholar 

  7. C. Gorba, O. Miyashita and F. Tama, Biophys. J., 94, 1589 (2008).

    Article  CAS  Google Scholar 

  8. Z. Bu and D. J. Callaway, Adv. Protein Chem. Str., Biol., 83, 163 (2011).

    Article  CAS  Google Scholar 

  9. H. Yim, R. Haselbeck, W. Niu, C. Pujol-Baxley, A. Burgard, J. Boldt, J. Khandurina, J. D. Trawick, R. E. Osterhout, R. Stephen, J. Estadilla, S. Teisan, H. B. Schreyer, S. Andrae, T. H. Yang, S. Y. Lee, M. J. Burk and S. Van Dien, Nat. Chem. Biol., 7, 445 (2011).

    Article  CAS  Google Scholar 

  10. S. Atsumi, T. Hanai and J. C. Liao, Nature, 451, 86 (2008).

    Article  CAS  Google Scholar 

  11. C. Seo, H. W. Lee, A. Suresh, J. W. Yang, J. K. Jung and Y. C. Kim, Korean J. Chem. Eng., 31, 1433 (2014).

    Article  CAS  Google Scholar 

  12. N. Shah, M. Ul-Islam, W. A. Khattak and J. K. Park, Carbohydr. Polym., 98, 1585 (2013).

    Article  CAS  Google Scholar 

  13. M. Ul-Islam, N. Shah, J. H. Ha and J. K. Park, Korean J. Chem. Eng., 28, 1736 (2011).

    Article  CAS  Google Scholar 

  14. M. W. Ullah, M. Ul-Islam, S. Khan, Y. Kim and J. K. Park, Carbohyd. Polym., 132, 286 (2015).

    Article  CAS  Google Scholar 

  15. M. W. Ullah, M. Ul-Islam, S. Khan, Y. Kim and J. K. Park, Carbohyd. Polym., 136, 908 (2016).

    Article  CAS  Google Scholar 

  16. M. Ul-Islam, T. Khan and J. K. Park, Carbohydr. Polym., 88, 596 (2012).

    Article  CAS  Google Scholar 

  17. W. Czaja, A. Krystynowicz, S. Bielecki and R. M. Brown, Biomaterials, 27, 145 (2006).

    Article  CAS  Google Scholar 

  18. D. Klemm, D. Schumann, U. Udhardt and S. Marsch, Prog. Polym. Sci., 26, 1561 (2001).

    Article  CAS  Google Scholar 

  19. M. Ul-Islam, W. A. Khattak, M. Kang, S. M. Kim, T. Khan and J. K. Park, Cellulose, 20, 253 (2013).

    Article  CAS  Google Scholar 

  20. M. Ul-Islam, W. A. Khattak, M. W. Ullah, S. Khan and J. K. Park, Cellulose, 21, 433 (2014).

    Article  CAS  Google Scholar 

  21. H. C. Wong, A. L. Fear, R. D. Calhoon, G. H. Eichinger, R. Mayer, D. Amikam, M. Benziman, D. H. Gelfand, J. H. Meade, A. W. Emerick, R. Bruner, A. Benbassat and R. Tal, Proc. Natl. Acad. Sci. U. S. A., 87, 8130 (1990).

    Article  CAS  Google Scholar 

  22. I. M. Saxena, K. Kudlicka, K. Okuda and R. M. Brown, J. Bacteriol., 176, 5735 (1994).

    Article  CAS  Google Scholar 

  23. S. Kawano, K. Tajima, Y. Uemori, H. Yamashita, T. Erata, M. Munekata and M. Takai, DNA Res., 9, 149 (2002).

    Article  CAS  Google Scholar 

  24. S. Masaoka, T. Ohe and N. Sakota, J. Ferment. Bioeng., 75, 18 (1993).

    Article  CAS  Google Scholar 

  25. P. DeWulf, K. Joris and E. J. Vandamme, J. Chem. Technol. Biotechnol., 67, 376 (1996).

    Article  CAS  Google Scholar 

  26. J. R. Colvin, Arch. Biochem. Biophys., 70, 294 (1957).

    Article  CAS  Google Scholar 

  27. M. W. Ullah, W. A. Khattak, M. Ul-Islam, S. Khan and J. K. Park, Biochem. Eng. J., 105, 391 (2016).

    Article  CAS  Google Scholar 

  28. R. Tal, H. C. Wong, R. Calhoon, D. Gelfand, A. L. Fear, G. Volman, R. Mayer, P. Ross, D. Amikam, H. Weinhouse, A. Cohen, S. Sapir, P. Ohana and M. Benziman, J. Bacteriol., 180, 4416 (1998).

    CAS  Google Scholar 

  29. P. D. Wulf, K. Joris and E. J. Vandamme, J. Chem. Technol. Biotechnol., 67, 376 (1996).

    Article  Google Scholar 

  30. A. Endler, C. Sánchez-Rodríguez and S. Persson, Nat. Chem. Biol., 6, 883 (2010).

    Article  CAS  Google Scholar 

  31. F. C. Lin, R. M. Brown Jr., R. R. Drake Jr. and B. E. Haley, J. Biol. Chem., 265, 4782 (1990).

  32. J. L. W. Morgan, J. T. McNamara and J. Zimmer, Nat. Struct. Mol. Biol., 21, 489 (2014).

    Article  CAS  Google Scholar 

  33. P. Ross, H. Weinhouse, Y. Aloni, D. Michaeli, P. Weinberger-Ohana, R. Mayer, S. Braun, E. de Vroom, G. van der Marel, J. H. van Boom and M. Benziman, Nature, 325, 279 (1987).

    Article  CAS  Google Scholar 

  34. M. Shoda and Y. Sugano, Biotechnol. Bioproc. E., 10, 1 (2005).

    Article  CAS  Google Scholar 

  35. R. Standal, T. G. Inversen, D. H. Coucheron, E. Fjærvik, J. Blatny and S. Valla, J. Bacteriol., 176, 665 (1994).

    Article  CAS  Google Scholar 

  36. T. Nakai, A. Moriya, N. Tonouchi, T. Tsuchida, F. Yoshinaga, S. Horinouchi, Y. Sone, H. Mori, F. Sakai and T. Hayashi, Gene, 213, 93 (1998).

    Article  CAS  Google Scholar 

  37. T. Nakai, Y. Nishiyama, S. Kuga, Y. Sugano and M. Shoda, Biochem. Biophys. Res. Commun., 295, 458 (2002).

    Article  CAS  Google Scholar 

  38. X. Zogaj, M. Nimtz, M. Rohde, W. Bokranz and U. Römling, Mol. Microbiol., 39, 1452 (2001).

    Article  CAS  Google Scholar 

  39. U. Römling, Res. Microbiol., 153, 205 (2002).

    Article  Google Scholar 

  40. A. C. Forster and G. M. Church, Genome Res., 17, 1 (2007).

    Article  CAS  Google Scholar 

  41. C. Son, W. Song, D. S. Hwang, Y. K. Hong, J. Joo and Y. S. Choi, Korean J. Chem. Eng., 33, 2406 (2016).

    Article  CAS  Google Scholar 

  42. I. Sun, X. Shen, R. Jain, Y. Lin, J. Wang, J. Sun, J. Wang, Y. Yan and Q. Yuan, Chem. Soc. Rev., 44, 3760 (2015).

    Article  CAS  Google Scholar 

  43. S. S. Sawant, B. K. Salunke, T. K. Tran and B. S. Kim, Korean J. Chem. Eng., 33, 1505 (2016).

    Article  CAS  Google Scholar 

  44. O. A. Saibuatong and M. Phisalaphong, Carbohydr. Polym., 79, 455 (2010).

    Article  CAS  Google Scholar 

  45. M. Ul-Islam, T. Khan and J. K. Park, Carbohydr. Polym., 89, 1189 (2012).

    Article  CAS  Google Scholar 

  46. H. X. Li, S. J. Kim, Y. W. Lee, C. D. Kee and I. K. Oh, Korean J. Chem. Eng., 28, 2306 (2011).

    Article  CAS  Google Scholar 

  47. D. Cienchanska, Fib. Text. East. Europe, 12, 69 (2004).

    Google Scholar 

  48. B. R. Evans, H. M. O’Neill, V. P. Malyvanh, I. Lee and J. Woodward, Biosens. Bioelectron., 18, 917 (2003).

    Article  CAS  Google Scholar 

  49. K. Mahmoudi, K. Hosni, N. Hamdi and E. Srasra, Korean J. Chem. Eng., 32, 274 (2015).

    Article  CAS  Google Scholar 

  50. V. L. Finkenstadt, Appl. Microbiol. Biotechnol., 67, 735 (2005).

    Article  CAS  Google Scholar 

  51. J. Kim and Y. B. Seo, Smart Mater. Struct., 11, 355 (2002).

    Article  CAS  Google Scholar 

  52. S. Khan, M. Ul-Islam, W. A. Khattak, M. W. Ullah, B. Yu and J. K. Park, Korean J. Chem. Eng., 32, 694 (2015).

    Article  CAS  Google Scholar 

  53. Y. Kojima, A. Seto, N. Tonouchi, T. Tsuchida and F. Yoshinaga, Biosci. Biotechnol. Biochem., 61, 1585 (1997).

    Article  CAS  Google Scholar 

  54. H. Lu, Q. Jia, L. Chen and L. Zhang, Res. Rev. J. Microbiol. Biotechnol., 5, 1 (2016).

    Google Scholar 

  55. Z. Li, L. Wang, J. Hua, S. Jia, J. Zhang and H. Liu, Carbohyd. Polym., 120, 115 (2015).

    Article  CAS  Google Scholar 

  56. A. Kurosumi, C. Sasaki, Y. Yamashita and Y. Nakamura, Carbohyd. Polym., 76, 333 (2009).

    Article  CAS  Google Scholar 

  57. A. J. Brown, Chem. Soc., 49, 432 (1988).

    Article  Google Scholar 

  58. J. H. Ha, N. Shah, M. Ul-Islam, T. Khan and J. K. Park, Process Biochem., 46, 1717 (2011).

    Article  CAS  Google Scholar 

  59. H. El-Saied, A. H. Basta and R. H. Gobran, Polym-Plast. Technol., 43, 797 (2004).

    Article  CAS  Google Scholar 

  60. Y. Umeda, A. Hirano, M. Ishibashi, H. Akiyama, T. Onizuka, M. Ikeuchi and Y. Inoue, DNA Res., 6, 109 (1999).

    Article  CAS  Google Scholar 

  61. J. Y. Jung, T. Khan, J. K. Park and H. N. Chang, Korean J. Chem. Eng., 24, 265 (2007).

    Article  CAS  Google Scholar 

  62. T. Khan and J. K. Park, Carbohydr. Polym., 73, 438 (2008).

    Article  CAS  Google Scholar 

  63. J. K. Park, Y. H. Park and J. Y. Jung, Biotechnol. Bioproc. E., 8, 83 (2003).

    Article  CAS  Google Scholar 

  64. J. K. Park, S. H. Hyun and J. Y. Jung, Biotechnol. Bioproc. E., 9, 383 (2004).

    Article  CAS  Google Scholar 

  65. I. W. Sutherland, Int. Dairy J., 11, 663 (2001).

    Article  CAS  Google Scholar 

  66. T. Nakai, Y. Sugano, M. Shoda, H. Sakakibara, K. Oiwa, S. Tuzi, T. Imai, J. Sugiyama, M. Takeuchi, D. Yamauchi and Y. Mineyuki, J. Bacteriol., 195, 958 (2013).

    Article  CAS  Google Scholar 

  67. N. Tonouchi, N. Tahara, T. Tsuchida, F. Yoshinaga, T. Beppu and S. Horinouchi, Biosci. Biotechnol. Biochem., 59, 805 (1995).

    Article  CAS  Google Scholar 

  68. S. Kawano, K. Tajima, H. Kono, T. Erata, M. Munekata and M. Takai, J. Biosci. Bioeng., 94, 275 (2002).

    Article  CAS  Google Scholar 

  69. H. M. Koo, S. H. Song, Y. R. Pyun and Y. S. Kim, Biosci. Biotechnol. Biochem., 62, 2257 (1998).

    Article  CAS  Google Scholar 

  70. A. Cavka, X. Guo, S. J. Tang, S. Winestrand, L. J. Jönsson and F. Hong, Biotechnol. Biofuel., 6, 1 (2013).

    Article  Google Scholar 

  71. Y. Feng, X. Zhang, Y. Shen, K. Yoshino and W. Feng, Carbohyd. Polym., 87, 644 (2012).

    Article  CAS  Google Scholar 

  72. C. Castro, R. Zuluaga, J. L. Putaux, G. Caro, I. Mondragon and P. Gañán, Carbohydr. Polym., 84, 96 (2011).

    Article  CAS  Google Scholar 

  73. M. Moosavi-Nasab and A. Yousefi, Iran. J. Biotechnol., 9, 94 (2011).

    CAS  Google Scholar 

  74. B. S. Hungund and S. Gupta, J. Microbio. Biochem. Technol., 5, 127 (2010).

    Article  Google Scholar 

  75. D. Mikkelsen, B. M. Flanagan, G. A. Dykes and M. J. Gidley, J. Appl. Microbiol., 107, 576 (2009).

    Article  CAS  Google Scholar 

  76. J. H. Ha, O. Shehzad, S. Khan, S. Y. Lee, J. W. Park, T. Khan and J. K. Park, Korean J. Chem. Eng., 25, 812 (2008).

    Article  CAS  Google Scholar 

  77. V. Y. Nguyen, B. Flanagan, M. J. Gidley and G. A. Dykes, Curr. Microbiol., 57, 449 (2008).

    Article  CAS  Google Scholar 

  78. S. M. Keshk, Bioproces. Biotechnique., 4, 2 (2014).

    Google Scholar 

  79. K. C. Cheng, J. M. Catchmark and A. Demirci, Biomacromolecules, 12, 730 (2011).

    Article  CAS  Google Scholar 

  80. K. C. Cheng, J. M. Catchmark and A. Demirci, Cellulose, 16, 1033 (2009).

    Article  CAS  Google Scholar 

  81. S. Y. Kim, J. N. Kim, Y. J. Wee, D. H. Park and H. W. Ryu, Appl. Biochem. Biotechnol., 131, 705 (2006).

    Article  Google Scholar 

  82. S. Bae and M. Shoda, Biotechnol. Progr., 20, 1366 (2004).

    Article  CAS  Google Scholar 

  83. J. K. Park, Y. H. Park and J. Y. Jung, Biotechnol. Bioproc. E., 8, 83 (2003).

    Article  CAS  Google Scholar 

  84. R. M. Brown, J. H. M. Willison and C. L. Richardson, Proc. Nat. Acad. Sci., U. S. A., 73, 4565 (1976).

    Article  CAS  Google Scholar 

  85. C. H. Haigler, In: S. H. Zeronian and R. Nevell, Ellis Horwood: Chichester, England 30 (1985).

  86. P. Ross R. Mayer and M. Benziman, Micobiol. Mol. Biol. Rev., 55, 35 (1991).

    CAS  Google Scholar 

  87. Y. Deng, N. Nagachar, L. Fang, X. Luan, J. M. Catchmark, M. Tien and T. H. Kao, PLOS ONE (2015), DOI:10. 1371/journal.pone.0119504.

    Google Scholar 

  88. W. S. Williams and R. E. Cannon, Appl. Environ. Microbiol., 55, 2448 (1989).

    CAS  Google Scholar 

  89. N. Tahara, H. Yano and F. Yoshinaga, J. Ferm. Bioeng., 83, 389 (1997).

    Article  CAS  Google Scholar 

  90. X. Yu and R. H. Atalla, Int. J. Biol. Macromol., 19, 145 (1996).

    Article  CAS  Google Scholar 

  91. L. J. Strap, A. Latos, I. Shim and D. T. Bonetta, PLoS ONE, 6, e28015 (2011).

    Article  CAS  Google Scholar 

  92. P. D. Wulf, K. Joris and E. J. Vandamme, J. Chem. Technol. Biotechnol., 67, 376 (1996).

    Article  Google Scholar 

  93. T. Ishida, Y. Sugano, T. Nakai and M. Shoda, Biosci. Biotechnol. Biochem., 66, 1677 (2002).

    Article  CAS  Google Scholar 

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Correspondence to Joong Kon Park.

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Joong Kon Park is a Professor in the Chemical Engineering Department at Kyungpook National University in Korea. He received his B.S. degree (Seoul National University, Korea), M.S. and Ph.D. degrees (KAIST, Korea), all in Chemical Engineering and was a postdoctoral fellow at the University of Michigan at Ann Arbor. His research interests include transport phenomena, and biochemical engineering, especially, bacterial cellulose nanocomposite.

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Ullah, M.W., Ul Islam, M., Khan, S. et al. Recent advancements in bioreactions of cellular and cell-free systems: A study of bacterial cellulose as a model. Korean J. Chem. Eng. 34, 1591–1599 (2017). https://doi.org/10.1007/s11814-017-0121-2

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