Abstract
The infections caused by Pseudomonas aeruginosa are difficult to treat due to its multidrug resistance. A promising strategy for controlling P. aeruginosa infection is targeting the quorum sensing (QS) system. Actinomycin D isolated from the metabolite of endophyte Streptomyces cyaneochromogenes RC1 exhibited good anti-QS activity against P. aeruginosa PAO1. Actinomycin D (50, 100, and 200 μg/mL) significantly inhibited the motility as well as reduced the production of multiple virulence factors including pyocyanin, protease, rhamnolipid, and siderophores. The images of confocal laser scanning microscopy and scanning electron microscopy revealed that the treatment of actinomycin D resulted in a looser and flatter biofilm structure. Real-time quantitative PCR analysis showed that the expression of QS-related genes lasI, rhlI, rhlR, pqsR, pslA, and pilA were downregulated dramatically. The production of QS signaling molecules N-(3-oxododecanoyl)-L-homoserine lactone and N-butanoyl-L-homoserine lactone were also decreased by actinomycin D. These findings suggest that actinomycin D, a potent in vitro anti-virulence agent, is a promising candidate to treat P. aeruginosa infection by interfering with the QS systems.
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The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.
References
Alhede M, Bjarnsholt T, Givskov M, Alhede M (2014) Pseudomonas aeruginosa biofilms: mechanisms of immune evasion. Adv Appl Microbiol 86:1–40. https://doi.org/10.1016/B978-0-12-800262-9.00001-9
Brackman G, Cos P, Maes L, Nelis HJ, Coenye T (2011) Quorum sensing inhibitors increase the susceptibility of bacterial biofilms to antibiotics in vitro and in vivo. Antimicrob Agents Chemother 55:2655–2661. https://doi.org/10.1128/AAC.00045-11
Brindhadevi K, LewisOscar F, Mylonakis E, Shanmugam S, Verma TN, Pugazhendhi A (2020) Biofilm and Quorum sensing mediated pathogenicity in Pseudomonas aeruginosa. Process Biochem 96:49–57. https://doi.org/10.1016/j.procbio.2020.06.001
Chadha J, Harjai K, Chhibber S (2021) Repurposing phytochemicals as anti-virulent agents to attenuate quorum sensing-regulated virulence factors and biofilm formation in Pseudomonas aeruginosa. Microb Biotechnol 15:1695–1718. https://doi.org/10.1111/1751-7915.13981
Cheng WJ, Zhou JW, Zhang PP, Luo HZ, Tang S, Li JJ et al (2020) Quorum sensing inhibition and tobramycin acceleration in Chromobacterium violaceum by two natural cinnamic acid derivatives. Appl Microbiol Biotechnol 104:5025–5037. https://doi.org/10.1007/s00253-020-10593-0
Damiano S, Forino M, De A, Vitali LA, Lupidi G, Taglialatela-Scafati O (2017) Antioxidant and antibiofilm activities of secondary metabolites from Ziziphus jujuba leaves used for infusion preparation. Food Chem 230:24–29. https://doi.org/10.1016/j.foodchem.2017.02.141
Defoirdt T (2018) Quorum-sensing systems as targets for antivirulence therapy. Trends Microbiol 26:313–328. https://doi.org/10.1016/j.tim.2017.10.005
Diggle SP, Winzer K, Chhabra SR, Worrall KE, Camara M, Williams P (2003) The Pseudomonas aeruginosa quinolone signal molecule overcomes the cell density-dependency of the quorum sensing hierarchy, regulates rhl-dependent genes at the onset of stationary phase and can be produced in the absence of LasR. Mol Microbiol 50:29–43. https://doi.org/10.1046/j.1365-2958.2003.03672.x
Dong YH, Xu JL, Li XZ, Zhang LH (2000) AiiA, an enzyme that inactivates the acylhomoserine lactone quorum-sensing signal and attenuates the virulence of Erwinia carotovora. Proc Natl Acad Sci 97:3526–3531. https://doi.org/10.1073/pnas.97.7.3526
Dong YH, Wang LH, Xu JL, Zhang HB, Zhang XF, Zhang LH (2001) Quenching quorum-sensing-dependent bacterial infection by an N-acyl homoserine lactonase. Nature 411:813–817. https://doi.org/10.1038/35081101
Essar DW, Eberly L, Hadero A, Crawford IP (1990) Identification and characterization of genes for a second anthranilate synthase in Pseudomonas aeruginosa: interchangeability of the two anthranilate synthases and evolutionary implications. J Bacteriol 172:884–900. https://doi.org/10.1128/jb.172.2.884-900.1990
Farber S, D’Angio G, Evans A, Mitus A (2002) Clinical studies of actinomycin D with special reference to Wilms’ tumor in children. J Urol 168:2560–2562. https://doi.org/10.1016/S0022-5347(05)64213-9
Fuqua WC, Winans SC, Greenberg EP (1994) Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J Bacteriol 176:269–275. https://doi.org/10.1128/jb.176.2.269-275.1994
Garcia-Contreras R, Martinez-Vazquez M, Velazquez Guadarrama N, Villegas Paneda AG, Hashimoto T, Maeda T et al (2013) Resistance to the quorum-quenching compounds brominated furanone C-30 and 5-fluorouracil in Pseudomonas aeruginosa clinical isolates. Pathog Dis 68:8–11. https://doi.org/10.1111/2049-632X.12039
Garcia-Contreras R, Perez-Eretza B, Jasso-Chavez R, Lira-Silva E, Roldan-Sanchez JA, Gonzalez-Valdez A et al (2015) High variability in quorum quenching and growth inhibition by furanone C-30 in Pseudomonas aeruginosa clinical isolates from cystic fibrosis patients. Pathog Dis 73:ftv040. https://doi.org/10.1093/femspd/ftv040
Hentzer M, Riedel K, Rasmussen TB, Heydorn A, Givskov M (2002) Inhibition of quorum sensing in Pseudomonas aeruginosa biofilm bacteria by a halogenated furanone compound. Microbiol-Sgm 148:87–102. https://doi.org/10.1099/00221287-148-1-87
Kersten W, Kersten H, Rauen HM (1960) Action of Nucleic Acids on the inhibition of growth by Actinomycin of Neurospora crassa. Nature 187:60–61. https://doi.org/10.1038/187060a0
Khan F, Pham DTN, Oloketuyi SF, Kim YM (2020) Regulation and controlling the motility properties of Pseudomonas aeruginosa. Appl Microbiol Biotechnol 104:33–49. https://doi.org/10.1007/s00253-019-10201-w
Kirk JM (1960) The mode of action of actinomycin D. Biochem Biophys Acta 42:167–169. https://doi.org/10.1016/0006-3002(60)90769-1
Koh KH, Tham FY (2011) Screening of traditional Chinese medicinal plants for quorum-sensing inhibitors activity. J Microbiol Immunol Infect 44:144–148. https://doi.org/10.1016/j.jmii.2009.10.001
Lee J, Zhang L (2015) The hierarchy quorum sensing network in Pseudomonas aeruginosa. Protein Cell 6:26–41. https://doi.org/10.1007/s13238-014-0100-x
Levinthal C, Higa KA (1962) Messenger RNA turnover and protein synthesis In B. subtilis inhibited by actinomycin D. Proc Natl Acad Sci 48:1631–1638. https://doi.org/10.1073/pnas.48.9.1631
Maura D, Hazan R, Kitao T, Ballok AE, Rahme LG (2016) Evidence for direct control of virulence and defense gene circuits by the Pseudomonas aeruginosa quorum sensing regulator. MvfR Sci Rep 6:34083. https://doi.org/10.1038/srep34083
Mu YQ, Xie TT, Zeng H, Chen W, Wan CX, Zhang LL (2020) Streptomyces-derived actinomycin D inhibits biofilm formation via downregulating ica locus and decreasing production of PIA in Staphylococcus epidermidis. J Appl Microbiol 128:1201–1207. https://doi.org/10.1111/jam.14543
Muller W, Crothers DM (1975) Studies of the binding of actinomycin and related compounds to DNA. Eur J Biochem 35:251–290. https://doi.org/10.1016/S0022-2836(68)80024-5
Nam S, Ham SY, Kwon H, Kim HS, Moon S, Lee JH et al (2020) Discovery and characterization of pure RhlR antagonists against Pseudomonas aeruginosa infections. J Med Chem 63:8388–8407. https://doi.org/10.1021/acs.jmedchem.0c00630
Nascimento SB, Lima AM, Borges BN, de Souza CR (2015) Endophytic bacteria from Piper tuberculatum Jacq.: isolation, molecular characterization, and in vitro screening for the control of Fusarium solani f. sp piperis, the causal agent of root rot disease in black pepper (Piper nigrum L.). Genet Mol Res 14:7567–7577. https://doi.org/10.4238/2015.July.3.32
Ogasawara Y, Shimizu Y, Sato Y, Yoneda T, Inokuma Y, Dairi T (2020) Identification of actinomycin D as a specific inhibitor of the alternative pathway of peptidoglycan biosynthesis. J Antibiot 73:125–127. https://doi.org/10.1038/s41429-019-0252-2
Packiavathy IA, Priya S, Pandian SK, Ravi AV (2014) Inhibition of biofilm development of uropathogens by curcumin—an anti-quorum sensing agent from Curcuma longa. Food Chem 148:453–460. https://doi.org/10.1016/j.foodchem.2012.08.002
Paramanathan T, Vladescu I, McCauley MJ, Rouzina I, Williams MC (2012) Force spectroscopy reveals the DNA structural dynamics that govern the slow binding of Actinomycin D. Nucleic Acids Res 40:4925–4932. https://doi.org/10.1093/nar/gks069
Qin N, Tan X, Jiao Y, Liu L, Zhao W, Yang S et al (2014) RNA-Seq-based transcriptome analysis of methicillin-resistant Staphylococcus aureus biofilm inhibition by ursolic acid and resveratrol. Sci Rep 4:5467. https://doi.org/10.1038/srep05467
Quecan BXV, Santos JTC, Rivera MLC, Hassimotto NMA, Almeida FA, Pinto UM (2019) Effect of quercetin rich onion extracts on bacterial quorum sensing. Front Microbiol 10:867. https://doi.org/10.3389/fmicb.2019.00867
Rajesh PS, Rai VR (2013) Hydrolytic enzymes and quorum sensing inhibitors from endophytic fungi of Ventilago madraspatana Gaertn. Biocatal Agric Biotechnol 2:120–124. https://doi.org/10.1016/j.bcab.2013.01.002
Schywn B, Nielands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160:47–56. https://doi.org/10.1016/0003-2697(87)90612-9
Seleem NM, Abd El Latif HK, Shaldam MA, El-Ganiny A (2020) Drugs with new lease of life as quorum sensing inhibitors: for combating MDR Acinetobacter baumannii infections. Eur J Clin Microbiol Infect Dis 39:1687–1702. https://doi.org/10.1007/s10096-020-03882-z
Shukla A, Shukla G, Parmar P, Patel B, Goswami D, Saraf M (2021) Exemplifying the next generation of antibiotic susceptibility intensifiers of phytochemicals by LasR-mediated quorum sensing inhibition. Sci Rep 11:22421. https://doi.org/10.1038/s41598-021-01845-8
Sim L, Ward OP, Li Z (1997) Production and characterisation of a biosurfactant isolated from Pseudomonas aeruginosa UW-1. J Ind Microbiol Biotechnol 19:232–238. https://doi.org/10.1038/sj.jim.2900450
Siri C, Choon-Kook S, Kalai M, Steve A, Chan KG, Miguel C et al (2011) Characterization of N-acylhomoserine lactone-degrading bacteria associated with the Zingiber officinale (ginger) rhizosphere: Co-existence of quorum quenching and quorum sensing in Acinetobacter and Burkholderia. BMC Microbiol 11:51. https://doi.org/10.1186/1471-2180-11-51
Tan Y, Cheng Q, Yang H, Li H, Gong N, Liu D et al (2018) Effects of ALA-PDT on biofilm structure, virulence factor secretion, and QS in Pseudomonas aeruginosa. Photodiagnosis Photodyn Ther 24:88–94. https://doi.org/10.1016/j.pdpdt.2018.07.005
Teasdale ME, Liu J, Wallace J, Akhlaghi F, Rowley DC (2009) Secondary metabolites produced by the marine bacterium Halobacillus salinus that inhibit quorum sensing-controlled phenotypes in gram-negative bacteria. Appl Environ Microbiol 75:567–572. https://doi.org/10.1128/AEM.00632-08
Thi MTT, Wibowo D, Rehm BHA (2020) Pseudomonas aeruginosa Biofilms. Int J Mol Sci 21:8671. https://doi.org/10.3390/ijms21228671
Venkatramanan M, Sankar Ganesh P, Senthil R, Akshay J, Veera Ravi A, Langeswaran K et al (2020) Inhibition of quorum sensing and biofilm formation in Chromobacterium violaceum by fruit extracts of Passiflora edulis. ACS Omega 5:25605–25616. https://doi.org/10.1021/acsomega.0c02483
Wang M, Zhao L, Wu H, Zhao C, Gong Q, Yu W (2020) Cladodionen is a potential quorum sensing inhibitor against Pseudomonas aeruginosa. Mar Drugs 18:205. https://doi.org/10.3390/md18040205
Wu Q, Ye Y, Li F, Zhang J, Guo W (2016a) Prevalence and genetic characterization of Pseudomonas aeruginosa in drinking water in Guangdong Province of China. LWT Food Sci Technol 69:24–31. https://doi.org/10.1016/j.lwt.2016.01.014
Wu S, Liu G, Jin W, Xiu P, Sun C (2016b) Antibiofilm and anti-infection of a marine bacterial exopolysaccharide against Pseudomonas aeruginosa. Front Microbiol 7:102. https://doi.org/10.3389/fmicb.2016.00102
Xiao YL, Williams DE (1994) Genetic algorithms for docking of actinomycin D and deoxyguanosine molecules with comparison to the crystal structure of actinomycin D-deoxyguanosine complex. J Phys Chem 98:7191–7200. https://doi.org/10.1021/j100080a015
Xin L, Zeng Y, Sheng S, Chea RA, Liu Q, Li HY et al (2019) Regulation of flagellar motor switching by c-di-GMP phosphodiesterases in Pseudomonas aeruginosa. J Biol Chem 294:13789–13799. https://doi.org/10.1074/jbc.RA119.009009
Yang L, Rybtke MT, Jakobsen TH, Hentzer M, Bjarnsholt T, Givskov M et al (2009) Computer-aided identification of recognized drugs as Pseudomonas aeruginosa quorum-sensing inhibitors. Antimicrob Agents Chemother 53:2432–2443. https://doi.org/10.1128/AAC.01283-08
Yekkour A, Sabaou N, Zitouni A, Errakhi R, Mathieu F, Lebrihi A (2012) Characterization and antagonistic properties of Streptomyces strains isolated from Saharan soils, and evaluation of their ability to control seedling blight of barley caused by Fusarium culmorum. Lett Appl Microbiol 55:427–435. https://doi.org/10.1111/j.1472-765x.2012.03312.x
Zhou J, Bi S, Chen H, Chen T, Yang R, Li M et al (2017) Anti-Biofilm and antivirulence activities of metabolites from Plectosphaerella cucumerina against Pseudomonas aeruginosa. Front Microbiol 8:769. https://doi.org/10.3389/fmicb.2017.00769
Zhou JW, Hou B, Liu GY, Jiang H, Sun B, Wang ZN et al (2018a) Attenuation of Pseudomonas aeruginosa biofilm by hordenine: a combinatorial study with aminoglycoside antibiotics. Appl Microbiol Biotechnol 102:9745–9758. https://doi.org/10.1007/s00253-018-9315-8
Zhou JW, Luo HZ, Jiang H, Jian TK, Chen ZQ, Jia AQ (2018b) Hordenine: A novel quorum sensing inhibitor and antibiofilm agent against Pseudomonas aeruginosa. J Agric Food Chem 66:1620–1628. https://doi.org/10.1021/acs.jafc.7b05035
Zhou JW, Jia AQ, Jiang H, Li PL, Chen H, Tan XJ et al (2021) 1-(4-Amino-2-hydroxyphenyl)ethanone from Phomopsis liquidambari showed quorum sensing inhibitory activity against Pseudomonas aeruginosa. Appl Microbiol Biotechnol 105:341–352. https://doi.org/10.1007/s00253-020-11013-z
Acknowledgements
This research was funded by National Natural Science Foundation of China (No. 82160664), Natural Science Foundation of Hainan Province (No. 221CXTD434 and No. 221QN170).
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This work was supported by National Natural Science Foundation of China (Grant number [82160664]), Natural Science Foundation of Hainan Province (Grant numbers [221CXTD434] and [221QN170]).
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All authors contributed to this study´s conception and design. Material preparation were performed by Y.Z., J.L. and Y.W.; data collection and analysis were performed by Y.Z., J.L., S.T. and D.W.; the figures were created by Y.Z., J.L., Y.W. and D.W.; the tables were made by S.T. and S.D.; the literature search was performed by Y.W. and S.T.; the framework of the manuscript was drafted by A.J.; the manuscript was written and revised Y.Z., J.L. and A.J. All authors reviewed the manuscript.
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Zeng, YX., Liu, JS., Wang, YJ. et al. Actinomycin D: a novel Pseudomonas aeruginosa quorum sensing inhibitor from the endophyte Streptomyces cyaneochromogenes RC1. World J Microbiol Biotechnol 38, 170 (2022). https://doi.org/10.1007/s11274-022-03360-y
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DOI: https://doi.org/10.1007/s11274-022-03360-y